CircRNA Information

General Information
circRNA Basic Information
CircID chr16:88809794|88810142
Strand -
CircType exon
Host Gene ENSG00000198931.9;
Algorism CIRI2;
Sequence CTCAGCCTGCAGGCGGCCCAGCAGCTCACAGGCAGCGTTCATGGTTCCTGGGGATGGGAGGGTGAGGTCCCCAGTTGGCCTGGGCTGCAGAGAGCAGGTGCTCCAGGCCAGCCCCTGGGTTGGGGAGGGGAAGGCATGGGGAGAGGAAGGTGTCGGCCTGGCCACCAGGCACCCTCTGGACAACAGTAAGCTGCATCCCATGTCACACAGCGAGGTCCTGTCCCACTCCCACCAGGCCCTTGGAGCCACAGCAGTTGGCTGCGGGGAGACCCTTACCACCAGTGGCCAGCAGATCATCCACGACGACCACCCTCTGTCCTGGCTCCAGGGCGTCTTTCTGAATCTCCAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:88809794|88810142 hsa-miR-198 0 0 1
chr16:88809794|88810142 hsa-miR-452-5p 0 0 1
chr16:88809794|88810142 hsa-miR-452-3p 0 0 1
chr16:88809794|88810142 hsa-miR-558 0 0 1
chr16:88809794|88810142 hsa-miR-588 0 0 1
chr16:88809794|88810142 hsa-miR-620 0 0 1
chr16:88809794|88810142 hsa-miR-661 1 0 1
chr16:88809794|88810142 hsa-miR-1301-5p 0 0 1
chr16:88809794|88810142 hsa-miR-1301-3p 0 0 1
chr16:88809794|88810142 hsa-miR-541-5p 0 0 1
chr16:88809794|88810142 hsa-miR-541-3p 0 0 1
chr16:88809794|88810142 hsa-miR-873-5p 0 0 1
chr16:88809794|88810142 hsa-miR-873-3p 0 0 1
chr16:88809794|88810142 hsa-miR-1182 1 0 1
chr16:88809794|88810142 hsa-miR-1205 0 0 1
chr16:88809794|88810142 hsa-miR-1293 1 0 1
chr16:88809794|88810142 hsa-miR-1255a 0 0 1
chr16:88809794|88810142 hsa-miR-1270 0 0 1
chr16:88809794|88810142 hsa-miR-1184 0 0 1
chr16:88809794|88810142 hsa-miR-654-5p 0 0 1
chr16:88809794|88810142 hsa-miR-525-5p 0 0 1
chr16:88809794|88810142 hsa-miR-532-5p 0 0 1
chr16:88809794|88810142 hsa-miR-876-3p 0 0 1
chr16:88809794|88810142 hsa-miR-520a-5p 0 0 1
chr16:88809794|88810142 hsa-miR-1302 0 0 1
chr16:88809794|88810142 hsa-miR-542-3p 0 0 1
chr16:88809794|88810142 hsa-miR-323-5p 0 0 1
chr16:88809794|88810142 hsa-miR-550 0 0 1
chr16:88809794|88810142 hsa-miR-1255b 0 0 1
chr16:88809794|88810142 hsa-miR-1254 0 0 1
chr16:88809794|88810142 hsa-miR-720 0 0 1
chr16:88809794|88810142 hsa-miR-608 1 0 0
chr16:88809794|88810142 hsa-miR-762 1 0 0
chr16:88809794|88810142 hsa-miR-665 1 0 0
chr16:88809794|88810142 hsa-miR-1268a 1 0 0
chr16:88809794|88810142 hsa-miR-2861 1 0 0
chr16:88809794|88810142 hsa-miR-4298 1 0 0
chr16:88809794|88810142 hsa-miR-1268b 1 0 0
chr16:88809794|88810142 hsa-miR-4440 1 0 0
chr16:88809794|88810142 hsa-miR-4660 1 0 0
chr16:88809794|88810142 hsa-miR-4686 1 0 0
chr16:88809794|88810142 hsa-miR-6085 1 0 0
chr16:88809794|88810142 hsa-miR-6127 1 0 0
chr16:88809794|88810142 hsa-miR-6749-3p 1 0 0
chr16:88809794|88810142 hsa-miR-504-3p 1 0 0
chr16:88809794|88810142 hsa-miR-4726-3p 1 0 0
chr16:88809794|88810142 hsa-miR-6842-3p 1 0 0
chr16:88809794|88810142 hsa-miR-7108-5p 1 0 0
chr16:88809794|88810142 hsa-miR-6793-5p 1 0 0
chr16:88809794|88810142 hsa-miR-6732-5p 1 0 0
chr16:88809794|88810142 hsa-miR-6805-5p 1 0 0
chr16:88809794|88810142 hsa-miR-6782-5p 1 0 0
chr16:88809794|88810142 hsa-miR-6821-5p 1 0 0
chr16:88809794|88810142 hsa-miR-4640-5p 1 0 0
chr16:88809794|88810142 hsa-miR-6803-3p 1 0 0
chr16:88809794|88810142 hsa-miR-885-3p 1 0 0
chr16:88809794|88810142 hsa-miR-3667-3p 1 0 0
chr16:88809794|88810142 hsa-miR-92b-5p 1 0 0
chr16:88809794|88810142 hsa-miR-3677-3p 1 0 0
chr16:88809794|88810142 hsa-miR-6749-5p 1 0 0
chr16:88809794|88810142 hsa-miR-7111-3p 1 0 0
chr16:88809794|88810142 hsa-miR-4446-3p 1 0 0
chr16:88809794|88810142 hsa-miR-149-3p 1 0 0
chr16:88809794|88810142 hsa-miR-6785-3p 1 0 0
chr16:88809794|88810142 hsa-miR-6865-3p 1 0 0
chr16:88809794|88810142 hsa-miR-6777-3p 1 0 0
chr16:88809794|88810142 hsa-miR-431-3p 1 0 0
chr16:88809794|88810142 hsa-miR-4763-3p 1 0 0
chr16:88809794|88810142 hsa-miR-6769b-5p 1 0 0
chr16:88809794|88810142 hsa-miR-6778-5p 1 0 0
chr16:88809794|88810142 hsa-miR-6787-5p 1 0 0
chr16:88809794|88810142 hsa-miR-6816-5p 1 0 0
chr16:88809794|88810142 hsa-miR-6737-5p 1 0 0
chr16:88809794|88810142 hsa-miR-6752-5p 1 0 0
chr16:88809794|88810142 hsa-miR-6756-5p 1 0 0
chr16:88809794|88810142 hsa-miR-6769a-5p 1 0 0
chr16:88809794|88810142 hsa-miR-6803-5p 1 0 0
chr16:88809794|88810142 hsa-miR-6842-5p 1 0 0
chr16:88809794|88810142 hsa-miR-7107-5p 1 0 0
chr16:88809794|88810142 hsa-miR-1249-5p 1 0 0
chr16:88809794|88810142 hsa-miR-6751-5p 1 0 0
chr16:88809794|88810142 hsa-miR-4728-5p 1 0 0
chr16:88809794|88810142 hsa-miR-6836-5p 1 0 0
chr16:88809794|88810142 hsa-miR-1237-5p 1 0 0
chr16:88809794|88810142 hsa-miR-4745-5p 1 0 0
chr16:88809794|88810142 hsa-miR-6795-5p 1 0 0
chr16:88809794|88810142 hsa-miR-6883-5p 1 0 0
chr16:88809794|88810142 hsa-miR-1271-3p 1 0 0
chr16:88809794|88810142 hsa-miR-6750-5p 1 0 0
chr16:88809794|88810142 hsa-miR-6766-5p 1 0 0
chr16:88809794|88810142 hsa-miR-6791-5p 1 0 0
chr16:88809794|88810142 hsa-miR-6511a-3p 1 0 0
chr16:88809794|88810142 hsa-miR-6784-3p 1 0 0
chr16:88809794|88810142 hsa-miR-10401-3p 1 0 0
chr16:88809794|88810142 hsa-miR-6511b-3p 1 0 0
chr16:88809794|88810142 hsa-miR-6891-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr16:88809794|88810142
ORF Type ORF1
Protein Length 60
Nucleotide Length 183
Protein Sequence MQAAQQLTGSVHGSWGWEGEVPSWPGLQRAGAPGQPLGWGGEGMGRGRCRPGHQAPSGQQ
Nucleotide Sequence CTGCAGGCGGCCCAGCAGCTCACAGGCAGCGTTCATGGTTCCTGGGGATGGGAGGGTGAGGTCCCCAGTTGGCCTGGGCTGCAGAGAGCAGGTGCTCCAGGCCAGCCCCTGGGTTGGGGAGGGGAAGGCATGGGGAGAGGAAGGTGTCGGCCTGGCCACCAGGCACCCTCTGGACAACAGTAA
CircID chr16:88809794|88810142
ORF Type ORF2
Protein Length 30
Nucleotide Length 90
Protein Sequence MRGDPYHQWPADHPRRPPSVLAPGRLSESP
Nucleotide Sequence CTGCGGGGAGACCCTTACCACCAGTGGCCAGCAGATCATCCACGACGACCACCCTCTGTCCTGGCTCCAGGGCGTCTTTCTGAATCTCCA
CircID chr16:88809794|88810142
ORF Type ORF3
Protein Length 103
Nucleotide Length 309
Protein Sequence MVPGDGRVRSPVGLGCREQVLQASPWVGEGKAWGEEGVGLATRHPLDNSKLHPMSHSEVLSHSHQALGATAVGCGETLTTSGQQIIHDDHPLSWLQGVFLNLQ
Nucleotide Sequence ATGGTTCCTGGGGATGGGAGGGTGAGGTCCCCAGTTGGCCTGGGCTGCAGAGAGCAGGTGCTCCAGGCCAGCCCCTGGGTTGGGGAGGGGAAGGCATGGGGAGAGGAAGGTGTCGGCCTGGCCACCAGGCACCCTCTGGACAACAGTAAGCTGCATCCCATGTCACACAGCGAGGTCCTGTCCCACTCCCACCAGGCCCTTGGAGCCACAGCAGTTGGCTGCGGGGAGACCCTTACCACCAGTGGCCAGCAGATCATCCACGACGACCACCCTCTGTCCTGGCTCCAGGGCGTCTTTCTGAATCTCCAG
CircID chr16:88809794|88810142
ORF Type ORF4
Protein Length 88
Nucleotide Length 267
Protein Sequence MAWAAESRCSRPAPGLGRGRHGERKVSAWPPGTLWTTVSCIPCHTARSCPTPTRPLEPQQLAAGRPLPPVASRSSTTTTLCPGSRASF
Nucleotide Sequence TTGGCCTGGGCTGCAGAGAGCAGGTGCTCCAGGCCAGCCCCTGGGTTGGGGAGGGGAAGGCATGGGGAGAGGAAGGTGTCGGCCTGGCCACCAGGCACCCTCTGGACAACAGTAAGCTGCATCCCATGTCACACAGCGAGGTCCTGTCCCACTCCCACCAGGCCCTTGGAGCCACAGCAGTTGGCTGCGGGGAGACCCTTACCACCAGTGGCCAGCAGATCATCCACGACGACCACCCTCTGTCCTGGCTCCAGGGCGTCTTTCTGA
CircID chr16:88809794|88810142
ORF Type ORF5
Protein Length 48
Nucleotide Length 147
Protein Sequence LEIQKDALEPGQRVVVVDDLLATGGKGLPAANCCGSKGLVGVGQDLAV
Nucleotide Sequence CTGGAGATTCAGAAAGACGCCCTGGAGCCAGGACAGAGGGTGGTCGTCGTGGATGATCTGCTGGCCACTGGTGGTAAGGGTCTCCCCGCAGCCAACTGCTGTGGCTCCAAGGGCCTGGTGGGAGTGGGACAGGACCTCGCTGTGTGA
CircID chr16:88809794|88810142
ORF Type ORF6
Protein Length 56
Nucleotide Length 171
Protein Sequence MQLTVVQRVPGGQADTFLSPCLPLPNPGAGLEHLLSAAQANWGPHPPIPRNHERCL
Nucleotide Sequence ATGCAGCTTACTGTTGTCCAGAGGGTGCCTGGTGGCCAGGCCGACACCTTCCTCTCCCCATGCCTTCCCCTCCCCAACCCAGGGGCTGGCCTGGAGCACCTGCTCTCTGCAGCCCAGGCCAACTGGGGACCTCACCCTCCCATCCCCAGGAACCATGAACGCTGCCTGTGA
CircID chr16:88809794|88810142
ORF Type ORF7
Protein Length 99
Nucleotide Length 297
Protein Sequence MICWPLVVRVSPQPTAVAPRAWWEWDRTSLCDMGCSLLLSRGCLVARPTPSSPHAFPSPTQGLAWSTCSLQPRPTGDLTLPSPGTMNAACELLGRLQAE
Nucleotide Sequence ATGATCTGCTGGCCACTGGTGGTAAGGGTCTCCCCGCAGCCAACTGCTGTGGCTCCAAGGGCCTGGTGGGAGTGGGACAGGACCTCGCTGTGTGACATGGGATGCAGCTTACTGTTGTCCAGAGGGTGCCTGGTGGCCAGGCCGACACCTTCCTCTCCCCATGCCTTCCCCTCCCCAACCCAGGGGCTGGCCTGGAGCACCTGCTCTCTGCAGCCCAGGCCAACTGGGGACCTCACCCTCCCATCCCCAGGAACCATGAACGCTGCCTGTGAGCTGCTGGGCCGCCTGCAGGCTGAG
CircID chr16:88809794|88810142
ORF Type ORF8
Protein Length 71
Nucleotide Length 216
Protein Sequence MLWLQGPGGSGTGPRCVTWDAAYCCPEGAWWPGRHLPLPMPSPPQPRGWPGAPALCSPGQLGTSPSHPQEP
Nucleotide Sequence CTGCTGTGGCTCCAAGGGCCTGGTGGGAGTGGGACAGGACCTCGCTGTGTGACATGGGATGCAGCTTACTGTTGTCCAGAGGGTGCCTGGTGGCCAGGCCGACACCTTCCTCTCCCCATGCCTTCCCCTCCCCAACCCAGGGGCTGGCCTGGAGCACCTGCTCTCTGCAGCCCAGGCCAACTGGGGACCTCACCCTCCCATCCCCAGGAACCATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab