CircRNA Information

General Information
circRNA Basic Information
CircID chr16:89707720|89707935
Strand -
CircType exon
Host Gene ENSG00000075399.11;
Algorism CIRI2;
Sequence CACAGTGGACAAGCCCCCACCATGTGCAGAGCAGCGTGAGGCTCCAGGATGGTCCTCAGTAGATCCCATGGCTCCAGGTGTAGGAGAGACAGCCCTGGGAGGCGAGGCCAGGCCCTGCAGGGACCCTGGGCTCTAGCTGTACTACTTGGCCAGGCCTCCCCGGGGCAGCAGCTCCACGTAGCTCAGGGCACTCTGCAGTGATGTGAGGCAGTAGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:89707720|89707935 hsa-miR-558 0 1 1
chr16:89707720|89707935 hsa-miR-593-5p 0 0 1
chr16:89707720|89707935 hsa-miR-593-3p 0 0 1
chr16:89707720|89707935 hsa-miR-610 0 0 1
chr16:89707720|89707935 hsa-miR-619-5p 0 0 1
chr16:89707720|89707935 hsa-miR-619-3p 0 0 1
chr16:89707720|89707935 hsa-miR-626 0 0 1
chr16:89707720|89707935 hsa-miR-638 0 0 1
chr16:89707720|89707935 hsa-miR-874-5p 0 0 1
chr16:89707720|89707935 hsa-miR-874-3p 0 0 1
chr16:89707720|89707935 hsa-miR-541-5p 0 0 1
chr16:89707720|89707935 hsa-miR-541-3p 0 0 1
chr16:89707720|89707935 hsa-miR-1205 0 1 1
chr16:89707720|89707935 hsa-miR-1281 0 0 1
chr16:89707720|89707935 hsa-miR-1224-5p 0 0 1
chr16:89707720|89707935 hsa-miR-146b-3p 0 0 1
chr16:89707720|89707935 hsa-miR-654-5p 0 0 1
chr16:89707720|89707935 hsa-miR-324-3p 1 0 1
chr16:89707720|89707935 hsa-miR-769-3p 0 1 1
chr16:89707720|89707935 hsa-miR-125a-5p 0 1 1
chr16:89707720|89707935 hsa-miR-509-3-5p 0 1 1
chr16:89707720|89707935 hsa-miR-509-5p 0 0 1
chr16:89707720|89707935 hsa-miR-450b-3p 0 0 1
chr16:89707720|89707935 hsa-miR-125b 0 0 1
chr16:89707720|89707935 hsa-miR-499-3p 0 0 1
chr16:89707720|89707935 hsa-miR-557 1 1 0
chr16:89707720|89707935 hsa-miR-611 1 0 0
chr16:89707720|89707935 hsa-miR-637 1 0 0
chr16:89707720|89707935 hsa-miR-762 1 0 0
chr16:89707720|89707935 hsa-miR-1200 0 1 0
chr16:89707720|89707935 hsa-miR-2861 0 1 0
chr16:89707720|89707935 hsa-miR-548s 0 1 0
chr16:89707720|89707935 hsa-miR-4254 0 1 0
chr16:89707720|89707935 hsa-miR-4281 1 0 0
chr16:89707720|89707935 hsa-miR-4447 0 1 0
chr16:89707720|89707935 hsa-miR-4449 1 0 0
chr16:89707720|89707935 hsa-miR-4480 0 1 0
chr16:89707720|89707935 hsa-miR-4654 1 1 0
chr16:89707720|89707935 hsa-miR-4663 0 1 0
chr16:89707720|89707935 hsa-miR-4682 0 1 0
chr16:89707720|89707935 hsa-miR-4689 1 0 0
chr16:89707720|89707935 hsa-miR-4741 1 0 0
chr16:89707720|89707935 hsa-miR-5691 0 1 0
chr16:89707720|89707935 hsa-miR-6132 0 1 0
chr16:89707720|89707935 hsa-miR-7974 1 0 0
chr16:89707720|89707935 hsa-miR-8089 1 0 0
chr16:89707720|89707935 hsa-miR-92a-2-5p 0 1 0
chr16:89707720|89707935 hsa-miR-6825-5p 0 1 0
chr16:89707720|89707935 hsa-miR-6089 1 0 0
chr16:89707720|89707935 hsa-miR-505-5p 0 1 0
chr16:89707720|89707935 hsa-miR-4655-5p 1 0 0
chr16:89707720|89707935 hsa-miR-1915-5p 1 0 0
chr16:89707720|89707935 hsa-miR-6845-3p 0 1 0
chr16:89707720|89707935 hsa-miR-185-3p 1 1 0
chr16:89707720|89707935 hsa-miR-6827-5p 1 1 0
chr16:89707720|89707935 hsa-miR-6882-3p 1 1 0
chr16:89707720|89707935 hsa-miR-1343-3p 1 1 0
chr16:89707720|89707935 hsa-miR-6852-5p 1 0 0
chr16:89707720|89707935 hsa-miR-1909-5p 1 0 0
chr16:89707720|89707935 hsa-miR-4717-3p 0 1 0
chr16:89707720|89707935 hsa-miR-6878-3p 0 1 0
chr16:89707720|89707935 hsa-miR-3648 1 0 0
chr16:89707720|89707935 hsa-miR-6824-5p 1 0 0
chr16:89707720|89707935 hsa-miR-3190-5p 0 1 0
chr16:89707720|89707935 hsa-miR-3619-3p 1 1 0
chr16:89707720|89707935 hsa-miR-6895-3p 0 1 0
chr16:89707720|89707935 hsa-miR-1296-5p 0 1 0
chr16:89707720|89707935 hsa-miR-5089-5p 0 1 0
chr16:89707720|89707935 hsa-miR-5587-3p 0 1 0
chr16:89707720|89707935 hsa-miR-500a-3p 1 0 0
chr16:89707720|89707935 hsa-miR-5001-5p 1 0 0
chr16:89707720|89707935 hsa-miR-6752-5p 1 0 0
chr16:89707720|89707935 hsa-miR-1915-3p 0 1 0
chr16:89707720|89707935 hsa-miR-6836-5p 0 1 0
chr16:89707720|89707935 hsa-miR-328-5p 1 0 0
chr16:89707720|89707935 hsa-miR-6777-5p 0 1 0
chr16:89707720|89707935 hsa-miR-6848-5p 1 0 0
chr16:89707720|89707935 hsa-miR-6889-5p 0 1 0
chr16:89707720|89707935 hsa-miR-939-5p 1 1 0
chr16:89707720|89707935 hsa-miR-3085-5p 1 0 0
chr16:89707720|89707935 hsa-miR-6791-5p 1 0 0
chr16:89707720|89707935 hsa-miR-6753-3p 1 0 0
chr16:89707720|89707935 hsa-miR-6893-3p 1 0 0
chr16:89707720|89707935 hsa-miR-10401-3p 0 1 0
chr16:89707720|89707935 hsa-miR-10394-5p 0 1 0
chr16:89707720|89707935 hsa-miR-6876-3p 0 1 0
chr16:89707720|89707935 hsa-miR-6764-5p 0 1 0
chr16:89707720|89707935 hsa-miR-3922-3p 0 1 0
chr16:89707720|89707935 hsa-miR-499a-3p 0 1 0
chr16:89707720|89707935 hsa-miR-499b-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr16:89707720|89707935
ORF Type ORF1
Protein Length 50
Nucleotide Length 153
Protein Sequence MVLSRSHGSRCRRDSPGRRGQALQGPWALAVLLGQASPGQQLHVAQGTLQ
Nucleotide Sequence ATGGTCCTCAGTAGATCCCATGGCTCCAGGTGTAGGAGAGACAGCCCTGGGAGGCGAGGCCAGGCCCTGCAGGGACCCTGGGCTCTAGCTGTACTACTTGGCCAGGCCTCCCCGGGGCAGCAGCTCCACGTAGCTCAGGGCACTCTGCAGTGA
CircID chr16:89707720|89707935
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MGSSCTTWPGLPGAAAPRSSGHSAVM
Nucleotide Sequence CTGGGCTCTAGCTGTACTACTTGGCCAGGCCTCCCCGGGGCAGCAGCTCCACGTAGCTCAGGGCACTCTGCAGTGATGTGA
CircID chr16:89707720|89707935
ORF Type ORF3
Protein Length 40
Nucleotide Length 120
Protein Sequence MQGLASPPRAVSPTPGAMGSTEDHPGASRCSAHGGGLSTV
Nucleotide Sequence CTGCAGGGCCTGGCCTCGCCTCCCAGGGCTGTCTCTCCTACACCTGGAGCCATGGGATCTACTGAGGACCATCCTGGAGCCTCACGCTGCTCTGCACATGGTGGGGGCTTGTCCACTGTG
CircID chr16:89707720|89707935
ORF Type ORF4
Protein Length 30
Nucleotide Length 90
Protein Sequence MSLLHLEPWDLLRTILEPHAALHMVGACPL
Nucleotide Sequence CTGTCTCTCCTACACCTGGAGCCATGGGATCTACTGAGGACCATCCTGGAGCCTCACGCTGCTCTGCACATGGTGGGGGCTTGTCCACTG
CircID chr16:89707720|89707935
ORF Type ORF5
Protein Length 51
Nucleotide Length 156
Protein Sequence MPHITAECPELRGAAAPGRPGQVVQLEPRVPAGPGLASQGCLSYTWSHGIY
Nucleotide Sequence CTGCCTCACATCACTGCAGAGTGCCCTGAGCTACGTGGAGCTGCTGCCCCGGGGAGGCCTGGCCAAGTAGTACAGCTAGAGCCCAGGGTCCCTGCAGGGCCTGGCCTCGCCTCCCAGGGCTGTCTCTCCTACACCTGGAGCCATGGGATCTACTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab