CircRNA Information

General Information
circRNA Basic Information
CircID chr16:89717596|89717881
Strand +
CircType exon
Host Gene ENSG00000261373.1;
Algorism CIRI2;
Sequence GTGGGATCACAGAGGTCGGGGCAGCCACTGGACGTAGGATCACACAGGTCAGGGGGAGCTAACAGTTGCCCCAGCTCCCTAGGGAGCCGGTGAGCTCGGCTGAGCTCTGGCGCTCCAAGATTGAGGAGTTGGGTGGAGGAGTGGCAGAGGATCCCCTGGGGAGAGCAAAGTCCCAGAAGACAGAGGAACTCCAGTGGCCCACCGTGTCTGGCAAGGTGGGGACGGGTAAGGGCAGTTTCCGGGGGGAGTCGGGGGCTAAATCGGGGCGGGATGAGAAAATGGGAGT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:89717596|89717881 hsa-miR-99a-5p 0 0 1
chr16:89717596|89717881 hsa-miR-99a-3p 0 0 1
chr16:89717596|89717881 hsa-miR-100-5p 0 0 1
chr16:89717596|89717881 hsa-miR-100-3p 0 0 1
chr16:89717596|89717881 hsa-miR-99b-5p 0 0 1
chr16:89717596|89717881 hsa-miR-99b-3p 0 0 1
chr16:89717596|89717881 hsa-miR-432-5p 0 0 1
chr16:89717596|89717881 hsa-miR-432-3p 0 0 1
chr16:89717596|89717881 hsa-miR-604 0 0 1
chr16:89717596|89717881 hsa-miR-631 1 0 1
chr16:89717596|89717881 hsa-miR-647 0 1 1
chr16:89717596|89717881 hsa-miR-541-5p 0 0 1
chr16:89717596|89717881 hsa-miR-541-3p 0 0 1
chr16:89717596|89717881 hsa-miR-920 0 1 1
chr16:89717596|89717881 hsa-miR-938 0 0 1
chr16:89717596|89717881 hsa-miR-1202 0 0 1
chr16:89717596|89717881 hsa-miR-1247-5p 0 0 1
chr16:89717596|89717881 hsa-miR-1247-3p 0 0 1
chr16:89717596|89717881 hsa-miR-1321 0 0 1
chr16:89717596|89717881 hsa-miR-1825 0 0 1
chr16:89717596|89717881 hsa-miR-486-3p 0 0 1
chr16:89717596|89717881 hsa-miR-199a-5p 0 0 1
chr16:89717596|89717881 hsa-miR-654-5p 0 1 1
chr16:89717596|89717881 hsa-miR-339-3p 0 0 1
chr16:89717596|89717881 hsa-miR-1224-3p 0 0 1
chr16:89717596|89717881 hsa-miR-199b-5p 0 0 1
chr16:89717596|89717881 hsa-miR-324-3p 0 0 1
chr16:89717596|89717881 hsa-miR-483-3p 0 1 1
chr16:89717596|89717881 hsa-miR-596 1 0 0
chr16:89717596|89717881 hsa-miR-1470 1 0 0
chr16:89717596|89717881 hsa-miR-1913 1 1 0
chr16:89717596|89717881 hsa-miR-718 1 0 0
chr16:89717596|89717881 hsa-miR-4300 0 1 0
chr16:89717596|89717881 hsa-miR-4313 1 0 0
chr16:89717596|89717881 hsa-miR-4326 1 1 0
chr16:89717596|89717881 hsa-miR-3943 1 1 0
chr16:89717596|89717881 hsa-miR-4462 0 1 0
chr16:89717596|89717881 hsa-miR-7706 0 1 0
chr16:89717596|89717881 hsa-miR-8058 0 1 0
chr16:89717596|89717881 hsa-miR-9898 0 1 0
chr16:89717596|89717881 hsa-miR-6749-3p 1 0 0
chr16:89717596|89717881 hsa-miR-18a-3p 0 1 0
chr16:89717596|89717881 hsa-miR-6836-3p 1 0 0
chr16:89717596|89717881 hsa-miR-6720-5p 1 0 0
chr16:89717596|89717881 hsa-miR-766-3p 1 0 0
chr16:89717596|89717881 hsa-miR-6840-5p 1 1 0
chr16:89717596|89717881 hsa-miR-874-3p 1 0 0
chr16:89717596|89717881 hsa-miR-1915-5p 1 0 0
chr16:89717596|89717881 hsa-miR-6832-3p 1 0 0
chr16:89717596|89717881 hsa-miR-6728-3p 1 1 0
chr16:89717596|89717881 hsa-miR-6735-3p 1 1 0
chr16:89717596|89717881 hsa-miR-6882-3p 1 0 0
chr16:89717596|89717881 hsa-miR-532-3p 1 0 0
chr16:89717596|89717881 hsa-miR-6786-5p 0 1 0
chr16:89717596|89717881 hsa-miR-4793-5p 1 0 0
chr16:89717596|89717881 hsa-miR-4763-5p 1 0 0
chr16:89717596|89717881 hsa-miR-6763-3p 1 1 0
chr16:89717596|89717881 hsa-miR-7108-3p 1 0 0
chr16:89717596|89717881 hsa-miR-4707-3p 1 0 0
chr16:89717596|89717881 hsa-miR-6821-3p 0 1 0
chr16:89717596|89717881 hsa-miR-7111-3p 1 0 0
chr16:89717596|89717881 hsa-miR-6780a-3p 1 1 0
chr16:89717596|89717881 hsa-miR-4640-3p 1 0 0
chr16:89717596|89717881 hsa-miR-6786-3p 1 0 0
chr16:89717596|89717881 hsa-miR-6870-3p 1 1 0
chr16:89717596|89717881 hsa-miR-6743-3p 1 0 0
chr16:89717596|89717881 hsa-miR-7106-3p 1 0 0
chr16:89717596|89717881 hsa-miR-4687-5p 1 0 0
chr16:89717596|89717881 hsa-miR-6730-3p 1 0 0
chr16:89717596|89717881 hsa-miR-4732-3p 1 1 0
chr16:89717596|89717881 hsa-miR-6752-3p 1 0 0
chr16:89717596|89717881 hsa-miR-6746-3p 1 0 0
chr16:89717596|89717881 hsa-miR-7848-3p 1 0 0
chr16:89717596|89717881 hsa-miR-653-3p 0 1 0
chr16:89717596|89717881 hsa-miR-6773-3p 1 1 0
chr16:89717596|89717881 hsa-miR-1292-3p 1 0 0
chr16:89717596|89717881 hsa-miR-3670 0 1 0
chr16:89717596|89717881 hsa-miR-4433a-5p 1 0 0
chr16:89717596|89717881 hsa-miR-6798-3p 1 0 0
chr16:89717596|89717881 hsa-miR-6789-3p 1 0 0
chr16:89717596|89717881 hsa-miR-4727-5p 0 1 0
chr16:89717596|89717881 hsa-miR-2116-3p 1 0 0
chr16:89717596|89717881 hsa-miR-6509-3p 1 0 0
chr16:89717596|89717881 hsa-miR-6726-5p 0 1 0
chr16:89717596|89717881 hsa-miR-6754-3p 1 0 0
chr16:89717596|89717881 hsa-miR-10396a-3p 1 0 0
chr16:89717596|89717881 hsa-miR-10396b-3p 1 0 0
chr16:89717596|89717881 hsa-miR-6877-3p 1 0 0
chr16:89717596|89717881 hsa-miR-6727-3p 1 1 0
chr16:89717596|89717881 hsa-miR-4757-5p 1 1 0
chr16:89717596|89717881 hsa-miR-6784-3p 1 0 0
chr16:89717596|89717881 hsa-miR-6792-3p 0 1 0
chr16:89717596|89717881 hsa-miR-6862-3p 1 0 0
chr16:89717596|89717881 hsa-miR-6805-3p 1 0 0
chr16:89717596|89717881 hsa-miR-6810-3p 1 0 0
chr16:89717596|89717881 hsa-miR-10392-3p 1 0 0
chr16:89717596|89717881 hsa-miR-6819-3p 1 0 0
chr16:89717596|89717881 hsa-miR-5006-3p 1 0 0
chr16:89717596|89717881 hsa-miR-412-3p 1 0 0
chr16:89717596|89717881 hsa-miR-1250-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr16:89717596|89717881
ORF Type ORF1
Protein Length 62
Nucleotide Length 186
Protein Sequence MSSGAPRLRSWVEEWQRIPWGEQSPRRQRNSSGPPCLARWGRVRAVSGGSRGLNRGGMRKWE
Nucleotide Sequence CTGAGCTCTGGCGCTCCAAGATTGAGGAGTTGGGTGGAGGAGTGGCAGAGGATCCCCTGGGGAGAGCAAAGTCCCAGAAGACAGAGGAACTCCAGTGGCCCACCGTGTCTGGCAAGGTGGGGACGGGTAAGGGCAGTTTCCGGGGGGAGTCGGGGGCTAAATCGGGGCGGGATGAGAAAATGGGAG
CircID chr16:89717596|89717881
ORF Type ORF2
Protein Length 73
Nucleotide Length 219
Protein Sequence MPQLPREPVSSAELWRSKIEELGGGVAEDPLGRAKSQKTEELQWPTVSGKVGTGKGSFRGESGAKSGRDEKMG
Nucleotide Sequence TTGCCCCAGCTCCCTAGGGAGCCGGTGAGCTCGGCTGAGCTCTGGCGCTCCAAGATTGAGGAGTTGGGTGGAGGAGTGGCAGAGGATCCCCTGGGGAGAGCAAAGTCCCAGAAGACAGAGGAACTCCAGTGGCCCACCGTGTCTGGCAAGGTGGGGACGGGTAAGGGCAGTTTCCGGGGGGAGTCGGGGGCTAAATCGGGGCGGGATGAGAAAATGGGA
CircID chr16:89717596|89717881
ORF Type ORF3
Protein Length 58
Nucleotide Length 177
Protein Sequence MPLPVPTLPDTVGHWSSSVFWDFALPRGSSATPPPNSSILERQSSAELTGSLGSWGNC
Nucleotide Sequence CTGCCCTTACCCGTCCCCACCTTGCCAGACACGGTGGGCCACTGGAGTTCCTCTGTCTTCTGGGACTTTGCTCTCCCCAGGGGATCCTCTGCCACTCCTCCACCCAACTCCTCAATCTTGGAGCGCCAGAGCTCAGCCGAGCTCACCGGCTCCCTAGGGAGCTGGGGCAACTGTTAG
CircID chr16:89717596|89717881
ORF Type ORF4
Protein Length 34
Nucleotide Length 105
Protein Sequence MSSGTLLSPGDPLPLLHPTPQSWSARAQPSSPAP
Nucleotide Sequence CTGTCTTCTGGGACTTTGCTCTCCCCAGGGGATCCTCTGCCACTCCTCCACCCAACTCCTCAATCTTGGAGCGCCAGAGCTCAGCCGAGCTCACCGGCTCCCTAG
CircID chr16:89717596|89717881
ORF Type ORF5
Protein Length 64
Nucleotide Length 192
Protein Sequence MEFLCLLGLCSPQGILCHSSTQLLNLGAPELSRAHRLPRELGQLLAPPDLCDPTSSGCPDLCDP
Nucleotide Sequence CTGGAGTTCCTCTGTCTTCTGGGACTTTGCTCTCCCCAGGGGATCCTCTGCCACTCCTCCACCCAACTCCTCAATCTTGGAGCGCCAGAGCTCAGCCGAGCTCACCGGCTCCCTAGGGAGCTGGGGCAACTGTTAGCTCCCCCTGACCTGTGTGATCCTACGTCCAGTGGCTGCCCCGACCTCTGTGATCCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab