CircRNA Information

General Information
circRNA Basic Information
CircID chr16:89908876|89909107
Strand +
CircType exon
Host Gene ENSG00000141002.17;
Algorism CIRI2;
Sequence CTGCTTCCACTGTGTCACTCGCACCTGCCACAGAGGCCGACACGCAAGCGCTTGTACATTCGGTGGAGATGGGAAAGAACGTGGCCTGCAAACGCAGAGCTGTGACCCCCAAATAACACTGTTCCTCTCCTCCTCTCCCTTCCTGTGAGGGGAAAGACCCACTTAGCCCTGAGCCCCATCTCTCAGCATCTGGGTCTGAAAGAGGCAGCCAGTCCCTGTGAGCCCCAAAGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:89908876|89909107 hsa-miR-518e-5p 0 0 1
chr16:89908876|89909107 hsa-miR-518e-3p 0 0 1
chr16:89908876|89909107 hsa-miR-604 0 0 1
chr16:89908876|89909107 hsa-miR-647 0 0 1
chr16:89908876|89909107 hsa-miR-765 1 1 1
chr16:89908876|89909107 hsa-miR-892b 0 1 1
chr16:89908876|89909107 hsa-miR-1234-3p 0 0 1
chr16:89908876|89909107 hsa-miR-1266-5p 0 0 1
chr16:89908876|89909107 hsa-miR-1266-3p 0 0 1
chr16:89908876|89909107 hsa-miR-1275 0 0 1
chr16:89908876|89909107 hsa-miR-1282 0 0 1
chr16:89908876|89909107 hsa-miR-1234 0 0 1
chr16:89908876|89909107 hsa-miR-671-5p 0 0 1
chr16:89908876|89909107 hsa-miR-193a-5p 0 0 1
chr16:89908876|89909107 hsa-miR-513a-5p 1 1 1
chr16:89908876|89909107 hsa-miR-1207-5p 1 0 1
chr16:89908876|89909107 hsa-miR-128 0 0 1
chr16:89908876|89909107 hsa-miR-220c 0 0 1
chr16:89908876|89909107 hsa-miR-24 0 0 1
chr16:89908876|89909107 hsa-miR-638 1 0 0
chr16:89908876|89909107 hsa-miR-762 1 0 0
chr16:89908876|89909107 hsa-miR-760 0 1 0
chr16:89908876|89909107 hsa-miR-4270 0 1 0
chr16:89908876|89909107 hsa-miR-3621 1 0 0
chr16:89908876|89909107 hsa-miR-3665 1 1 0
chr16:89908876|89909107 hsa-miR-4437 1 1 0
chr16:89908876|89909107 hsa-miR-4498 1 0 0
chr16:89908876|89909107 hsa-miR-4518 1 0 0
chr16:89908876|89909107 hsa-miR-4656 1 0 0
chr16:89908876|89909107 hsa-miR-4706 1 0 0
chr16:89908876|89909107 hsa-miR-4739 1 1 0
chr16:89908876|89909107 hsa-miR-5572 1 1 0
chr16:89908876|89909107 hsa-miR-5705 1 0 0
chr16:89908876|89909107 hsa-miR-7150 0 1 0
chr16:89908876|89909107 hsa-miR-8085 0 1 0
chr16:89908876|89909107 hsa-miR-12115 1 0 0
chr16:89908876|89909107 hsa-miR-7106-5p 1 0 0
chr16:89908876|89909107 hsa-miR-6510-5p 1 0 0
chr16:89908876|89909107 hsa-miR-1236-5p 0 1 0
chr16:89908876|89909107 hsa-miR-1227-5p 1 0 0
chr16:89908876|89909107 hsa-miR-6880-5p 1 0 0
chr16:89908876|89909107 hsa-miR-6890-5p 1 0 0
chr16:89908876|89909107 hsa-miR-7845-5p 1 0 0
chr16:89908876|89909107 hsa-miR-185-3p 1 1 0
chr16:89908876|89909107 hsa-miR-6798-5p 1 0 0
chr16:89908876|89909107 hsa-miR-6760-5p 0 1 0
chr16:89908876|89909107 hsa-miR-6821-5p 1 0 0
chr16:89908876|89909107 hsa-miR-6882-3p 0 1 0
chr16:89908876|89909107 hsa-miR-6786-5p 1 0 0
chr16:89908876|89909107 hsa-miR-5088-5p 1 1 0
chr16:89908876|89909107 hsa-miR-5001-3p 0 1 0
chr16:89908876|89909107 hsa-miR-3127-5p 0 1 0
chr16:89908876|89909107 hsa-miR-3202 0 1 0
chr16:89908876|89909107 hsa-miR-6830-3p 0 1 0
chr16:89908876|89909107 hsa-miR-744-5p 1 0 0
chr16:89908876|89909107 hsa-miR-4283 0 1 0
chr16:89908876|89909107 hsa-miR-6761-5p 1 1 0
chr16:89908876|89909107 hsa-miR-3124-3p 0 1 0
chr16:89908876|89909107 hsa-miR-4763-3p 1 0 0
chr16:89908876|89909107 hsa-miR-6870-5p 1 0 0
chr16:89908876|89909107 hsa-miR-6893-5p 1 0 0
chr16:89908876|89909107 hsa-miR-6726-5p 1 0 0
chr16:89908876|89909107 hsa-miR-6803-5p 1 0 0
chr16:89908876|89909107 hsa-miR-11181-3p 0 1 0
chr16:89908876|89909107 hsa-miR-6751-5p 0 1 0
chr16:89908876|89909107 hsa-miR-6797-5p 1 1 0
chr16:89908876|89909107 hsa-miR-7111-5p 0 1 0
chr16:89908876|89909107 hsa-miR-4728-5p 1 1 0
chr16:89908876|89909107 hsa-miR-5196-5p 1 0 0
chr16:89908876|89909107 hsa-miR-6795-5p 0 1 0
chr16:89908876|89909107 hsa-miR-6885-5p 1 0 0
chr16:89908876|89909107 hsa-miR-10394-3p 1 0 0
chr16:89908876|89909107 hsa-miR-6731-5p 0 1 0
chr16:89908876|89909107 hsa-miR-6856-5p 1 1 0
chr16:89908876|89909107 hsa-miR-6855-5p 1 0 0
chr16:89908876|89909107 hsa-miR-6876-5p 0 1 0
chr16:89908876|89909107 hsa-miR-4757-5p 1 1 0
chr16:89908876|89909107 hsa-miR-6859-5p 0 1 0
chr16:89908876|89909107 hsa-miR-1295b-5p 0 1 0
chr16:89908876|89909107 hsa-miR-6781-3p 0 1 0
chr16:89908876|89909107 hsa-miR-370-5p 0 1 0
chr16:89908876|89909107 hsa-miR-6811-5p 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr16:89908876|89909107
ORF Type ORF1
Protein Length 34
Nucleotide Length 105
Protein Sequence LLPLCHSHLPQRPTRKRLYIRWRWERTWPANAEL
Nucleotide Sequence CTGCTTCCACTGTGTCACTCGCACCTGCCACAGAGGCCGACACGCAAGCGCTTGTACATTCGGTGGAGATGGGAAAGAACGTGGCCTGCAAACGCAGAGCTGTGA
CircID chr16:89908876|89909107
ORF Type ORF2
Protein Length 69
Nucleotide Length 207
Protein Sequence MPLSDPDAERWGSGLSGSFPSQEGRGGEEQCYLGVTALRLQATFFPISTECTSACVSASVAGASDTVEA
Nucleotide Sequence CTGCCTCTTTCAGACCCAGATGCTGAGAGATGGGGCTCAGGGCTAAGTGGGTCTTTCCCCTCACAGGAAGGGAGAGGAGGAGAGGAACAGTGTTATTTGGGGGTCACAGCTCTGCGTTTGCAGGCCACGTTCTTTCCCATCTCCACCGAATGTACAAGCGCTTGCGTGTCGGCCTCTGTGGCAGGTGCGAGTGACACAGTGGAAGCA
CircID chr16:89908876|89909107
ORF Type ORF3
Protein Length 54
Nucleotide Length 165
Protein Sequence MGLRAKWVFPLTGRERRRGTVLFGGHSSAFAGHVLSHLHRMYKRLRVGLCGRCE
Nucleotide Sequence ATGGGGCTCAGGGCTAAGTGGGTCTTTCCCCTCACAGGAAGGGAGAGGAGGAGAGGAACAGTGTTATTTGGGGGTCACAGCTCTGCGTTTGCAGGCCACGTTCTTTCCCATCTCCACCGAATGTACAAGCGCTTGCGTGTCGGCCTCTGTGGCAGGTGCGAGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab