CircRNA Information

General Information
circRNA Basic Information
CircID chr16:90005106|90005309
Strand +
CircType exon
Host Gene ENSG00000003249.12;
Algorism CIRI2;
Sequence AGCAAGTCAAAGAATGAGTTTAATATCAAAGTGTAAGCTTACTTTCCATCCCCAAGCCAGCCTGCCCCCTGCCCCATTTCCCATGAGCACACTTCTGGGGAAGGAAAACAGGCTCCTGGCCTTCACTCTCAGCAGAGCTTTGGAGATGCCCCAGGCATGCCCTGAGCTCCTTCTGTGTACCTGCTCCCACTTCTGAGCCACCCG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:90005106|90005309 hsa-miR-559 0 0 1
chr16:90005106|90005309 hsa-miR-595 0 0 1
chr16:90005106|90005309 hsa-miR-648 1 0 1
chr16:90005106|90005309 hsa-miR-661 0 0 1
chr16:90005106|90005309 hsa-miR-708-5p 0 0 1
chr16:90005106|90005309 hsa-miR-708-3p 0 0 1
chr16:90005106|90005309 hsa-miR-665 0 0 1
chr16:90005106|90005309 hsa-miR-920 0 0 1
chr16:90005106|90005309 hsa-miR-548j-5p 0 0 1
chr16:90005106|90005309 hsa-miR-548j-3p 0 0 1
chr16:90005106|90005309 hsa-miR-1266-5p 0 0 1
chr16:90005106|90005309 hsa-miR-1266-3p 0 0 1
chr16:90005106|90005309 hsa-miR-486-3p 0 0 1
chr16:90005106|90005309 hsa-miR-28-5p 0 0 1
chr16:90005106|90005309 hsa-miR-1207-5p 1 0 1
chr16:90005106|90005309 hsa-miR-548b-5p 0 0 1
chr16:90005106|90005309 hsa-miR-548d-5p 0 0 1
chr16:90005106|90005309 hsa-miR-515-5p 0 0 1
chr16:90005106|90005309 hsa-miR-548c-5p 0 0 1
chr16:90005106|90005309 hsa-miR-548a-5p 0 0 1
chr16:90005106|90005309 hsa-miR-548i 0 0 1
chr16:90005106|90005309 hsa-miR-1308 0 0 1
chr16:90005106|90005309 hsa-miR-1254 0 0 1
chr16:90005106|90005309 hsa-miR-24 0 0 1
chr16:90005106|90005309 hsa-miR-548h 0 0 1
chr16:90005106|90005309 hsa-miR-637 1 0 0
chr16:90005106|90005309 hsa-miR-663a 1 0 0
chr16:90005106|90005309 hsa-miR-762 1 0 0
chr16:90005106|90005309 hsa-miR-3141 1 0 0
chr16:90005106|90005309 hsa-miR-3196 1 0 0
chr16:90005106|90005309 hsa-miR-4298 1 0 0
chr16:90005106|90005309 hsa-miR-3937 1 0 0
chr16:90005106|90005309 hsa-miR-1268b 1 0 0
chr16:90005106|90005309 hsa-miR-4437 1 0 0
chr16:90005106|90005309 hsa-miR-4440 1 0 0
chr16:90005106|90005309 hsa-miR-4462 1 0 0
chr16:90005106|90005309 hsa-miR-4466 1 0 0
chr16:90005106|90005309 hsa-miR-4488 1 0 0
chr16:90005106|90005309 hsa-miR-4498 1 0 0
chr16:90005106|90005309 hsa-miR-4514 1 0 0
chr16:90005106|90005309 hsa-miR-4656 1 0 0
chr16:90005106|90005309 hsa-miR-4688 1 0 0
chr16:90005106|90005309 hsa-miR-4748 1 0 0
chr16:90005106|90005309 hsa-miR-5090 1 0 0
chr16:90005106|90005309 hsa-miR-5093 1 0 0
chr16:90005106|90005309 hsa-miR-5192 1 0 0
chr16:90005106|90005309 hsa-miR-5787 1 0 0
chr16:90005106|90005309 hsa-miR-6090 1 0 0
chr16:90005106|90005309 hsa-miR-6124 1 0 0
chr16:90005106|90005309 hsa-miR-6745 1 0 0
chr16:90005106|90005309 hsa-miR-7150 1 0 0
chr16:90005106|90005309 hsa-miR-7704 1 0 0
chr16:90005106|90005309 hsa-miR-8072 1 0 0
chr16:90005106|90005309 hsa-miR-12115 1 0 0
chr16:90005106|90005309 hsa-miR-150-3p 1 0 0
chr16:90005106|90005309 hsa-miR-4433b-3p 1 0 0
chr16:90005106|90005309 hsa-miR-4433a-3p 1 0 0
chr16:90005106|90005309 hsa-miR-6765-5p 1 0 0
chr16:90005106|90005309 hsa-miR-6857-5p 1 0 0
chr16:90005106|90005309 hsa-miR-6890-5p 1 0 0
chr16:90005106|90005309 hsa-miR-24-3p 1 0 0
chr16:90005106|90005309 hsa-miR-6727-5p 1 0 0
chr16:90005106|90005309 hsa-miR-6721-5p 1 0 0
chr16:90005106|90005309 hsa-miR-6716-5p 1 0 0
chr16:90005106|90005309 hsa-miR-6871-5p 1 0 0
chr16:90005106|90005309 hsa-miR-3151-5p 1 0 0
chr16:90005106|90005309 hsa-miR-3180-3p 1 0 0
chr16:90005106|90005309 hsa-miR-6772-5p 1 0 0
chr16:90005106|90005309 hsa-miR-6793-5p 1 0 0
chr16:90005106|90005309 hsa-miR-185-3p 1 0 0
chr16:90005106|90005309 hsa-miR-6732-5p 1 0 0
chr16:90005106|90005309 hsa-miR-6805-5p 1 0 0
chr16:90005106|90005309 hsa-miR-6798-5p 1 0 0
chr16:90005106|90005309 hsa-miR-6881-5p 1 0 0
chr16:90005106|90005309 hsa-miR-6835-5p 1 0 0
chr16:90005106|90005309 hsa-miR-6740-5p 1 0 0
chr16:90005106|90005309 hsa-miR-1229-5p 1 0 0
chr16:90005106|90005309 hsa-miR-4640-5p 1 0 0
chr16:90005106|90005309 hsa-miR-1908-5p 1 0 0
chr16:90005106|90005309 hsa-miR-1228-5p 1 0 0
chr16:90005106|90005309 hsa-miR-5010-5p 1 0 0
chr16:90005106|90005309 hsa-miR-7112-5p 1 0 0
chr16:90005106|90005309 hsa-miR-10400-5p 1 0 0
chr16:90005106|90005309 hsa-miR-1233-5p 1 0 0
chr16:90005106|90005309 hsa-miR-4763-3p 1 0 0
chr16:90005106|90005309 hsa-miR-6787-5p 1 0 0
chr16:90005106|90005309 hsa-miR-6816-5p 1 0 0
chr16:90005106|90005309 hsa-miR-6775-5p 1 0 0
chr16:90005106|90005309 hsa-miR-6726-5p 1 0 0
chr16:90005106|90005309 hsa-miR-6743-5p 1 0 0
chr16:90005106|90005309 hsa-miR-6756-5p 1 0 0
chr16:90005106|90005309 hsa-miR-6803-5p 1 0 0
chr16:90005106|90005309 hsa-miR-6819-5p 1 0 0
chr16:90005106|90005309 hsa-miR-6722-3p 1 0 0
chr16:90005106|90005309 hsa-miR-6808-5p 1 0 0
chr16:90005106|90005309 hsa-miR-6879-5p 1 0 0
chr16:90005106|90005309 hsa-miR-7111-5p 1 0 0
chr16:90005106|90005309 hsa-miR-4728-5p 1 0 0
chr16:90005106|90005309 hsa-miR-5196-5p 1 0 0
chr16:90005106|90005309 hsa-miR-6780b-5p 1 0 0
chr16:90005106|90005309 hsa-miR-6836-5p 1 0 0
chr16:90005106|90005309 hsa-miR-6862-5p 1 0 0
chr16:90005106|90005309 hsa-miR-10396b-5p 1 0 0
chr16:90005106|90005309 hsa-miR-1237-5p 1 0 0
chr16:90005106|90005309 hsa-miR-1909-3p 1 0 0
chr16:90005106|90005309 hsa-miR-328-5p 1 0 0
chr16:90005106|90005309 hsa-miR-4649-5p 1 0 0
chr16:90005106|90005309 hsa-miR-6729-5p 1 0 0
chr16:90005106|90005309 hsa-miR-6794-5p 1 0 0
chr16:90005106|90005309 hsa-miR-6846-5p 1 0 0
chr16:90005106|90005309 hsa-miR-6848-5p 1 0 0
chr16:90005106|90005309 hsa-miR-6885-5p 1 0 0
chr16:90005106|90005309 hsa-miR-4758-5p 1 0 0
chr16:90005106|90005309 hsa-miR-4646-5p 1 0 0
chr16:90005106|90005309 hsa-miR-6766-5p 1 0 0
chr16:90005106|90005309 hsa-miR-6785-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr16:90005106|90005309
ORF Type ORF1
Protein Length 60
Nucleotide Length 183
Protein Sequence MSLISKCKLTFHPQASLPPAPFPMSTLLGKENRLLAFTLSRALEMPQACPELLLCTCSHF
Nucleotide Sequence ATGAGTTTAATATCAAAGTGTAAGCTTACTTTCCATCCCCAAGCCAGCCTGCCCCCTGCCCCATTTCCCATGAGCACACTTCTGGGGAAGGAAAACAGGCTCCTGGCCTTCACTCTCAGCAGAGCTTTGGAGATGCCCCAGGCATGCCCTGAGCTCCTTCTGTGTACCTGCTCCCACTTCTGA
CircID chr16:90005106|90005309
ORF Type ORF2
Protein Length 42
Nucleotide Length 129
Protein Sequence MLRVKARSLFSFPRSVLMGNGAGGRLAWGWKVSLHFDIKLIL
Nucleotide Sequence CTGCTGAGAGTGAAGGCCAGGAGCCTGTTTTCCTTCCCCAGAAGTGTGCTCATGGGAAATGGGGCAGGGGGCAGGCTGGCTTGGGGATGGAAAGTAAGCTTACACTTTGATATTAAACTCATTCTTTGA
CircID chr16:90005106|90005309
ORF Type ORF3
Protein Length 42
Nucleotide Length 129
Protein Sequence MGHLQSSAESEGQEPVFLPQKCAHGKWGRGQAGLGMESKLTL
Nucleotide Sequence CTGGGGCATCTCCAAAGCTCTGCTGAGAGTGAAGGCCAGGAGCCTGTTTTCCTTCCCCAGAAGTGTGCTCATGGGAAATGGGGCAGGGGGCAGGCTGGCTTGGGGATGGAAAGTAAGCTTACACTTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab