CircRNA Information

General Information
circRNA Basic Information
CircID chr16:90031476|90032903
Strand +
CircType exon
Host Gene ENSG00000141013.13;
Algorism CIRI2;
Sequence CACCTCACTGGCCAGCTCCTGCTCCTTGAGCTCCACCTTCAGTGCCCGCATGTCCTTGCGCAGCACACTCTCCTGTATGCGGTGCTCTTTCTGTGCCAGCTTCATGACTACAGTGCCCTCAGCCTTCATCTCTGTCAGGTTGTTCTGGTGCTCATATAGCAGGTGCTTCACTTTCTGCTTGTACACCTTGATCTCCACCTGGTGCCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:90031476|90032903 hsa-miR-29a-5p 0 0 1
chr16:90031476|90032903 hsa-miR-29a-3p 0 0 1
chr16:90031476|90032903 hsa-miR-143-5p 0 0 1
chr16:90031476|90032903 hsa-miR-143-3p 0 0 1
chr16:90031476|90032903 hsa-miR-29c-5p 0 0 1
chr16:90031476|90032903 hsa-miR-29c-3p 0 0 1
chr16:90031476|90032903 hsa-miR-493-5p 0 0 1
chr16:90031476|90032903 hsa-miR-493-3p 0 0 1
chr16:90031476|90032903 hsa-miR-620 0 0 1
chr16:90031476|90032903 hsa-miR-648 0 1 1
chr16:90031476|90032903 hsa-miR-708-5p 0 0 1
chr16:90031476|90032903 hsa-miR-708-3p 0 0 1
chr16:90031476|90032903 hsa-miR-1183 1 1 1
chr16:90031476|90032903 hsa-miR-1294 0 0 1
chr16:90031476|90032903 hsa-miR-1270 0 0 1
chr16:90031476|90032903 hsa-miR-1276 0 0 1
chr16:90031476|90032903 hsa-miR-127-5p 0 1 1
chr16:90031476|90032903 hsa-miR-574-5p 0 1 1
chr16:90031476|90032903 hsa-miR-28-5p 0 0 1
chr16:90031476|90032903 hsa-miR-556-5p 0 0 1
chr16:90031476|90032903 hsa-miR-29b 0 0 1
chr16:90031476|90032903 hsa-miR-1259 0 0 1
chr16:90031476|90032903 hsa-miR-449a 1 0 0
chr16:90031476|90032903 hsa-miR-637 1 0 0
chr16:90031476|90032903 hsa-miR-3185 1 0 0
chr16:90031476|90032903 hsa-miR-4257 1 0 0
chr16:90031476|90032903 hsa-miR-4270 1 0 0
chr16:90031476|90032903 hsa-miR-3665 1 0 0
chr16:90031476|90032903 hsa-miR-3135b 1 0 0
chr16:90031476|90032903 hsa-miR-4466 1 0 0
chr16:90031476|90032903 hsa-miR-4487 0 1 0
chr16:90031476|90032903 hsa-miR-4498 0 1 0
chr16:90031476|90032903 hsa-miR-4505 1 0 0
chr16:90031476|90032903 hsa-miR-4656 1 1 0
chr16:90031476|90032903 hsa-miR-4739 1 0 0
chr16:90031476|90032903 hsa-miR-4767 1 0 0
chr16:90031476|90032903 hsa-miR-4770 1 0 0
chr16:90031476|90032903 hsa-miR-4784 1 0 0
chr16:90031476|90032903 hsa-miR-5090 1 0 0
chr16:90031476|90032903 hsa-miR-5093 1 0 0
chr16:90031476|90032903 hsa-miR-5192 0 1 0
chr16:90031476|90032903 hsa-miR-5787 1 0 0
chr16:90031476|90032903 hsa-miR-6081 1 1 0
chr16:90031476|90032903 hsa-miR-6088 1 1 0
chr16:90031476|90032903 hsa-miR-6165 1 1 0
chr16:90031476|90032903 hsa-miR-8052 1 0 0
chr16:90031476|90032903 hsa-miR-8059 1 0 0
chr16:90031476|90032903 hsa-miR-8060 0 1 0
chr16:90031476|90032903 hsa-miR-8085 1 0 0
chr16:90031476|90032903 hsa-miR-12114 1 1 0
chr16:90031476|90032903 hsa-miR-12115 1 0 0
chr16:90031476|90032903 hsa-miR-12119 1 1 0
chr16:90031476|90032903 hsa-miR-4731-5p 1 0 0
chr16:90031476|90032903 hsa-miR-6765-5p 1 0 0
chr16:90031476|90032903 hsa-miR-6799-5p 1 0 0
chr16:90031476|90032903 hsa-miR-8071 1 0 0
chr16:90031476|90032903 hsa-miR-6804-5p 1 0 0
chr16:90031476|90032903 hsa-miR-3622a-5p 1 0 0
chr16:90031476|90032903 hsa-miR-5187-5p 1 0 0
chr16:90031476|90032903 hsa-miR-3663-3p 1 1 0
chr16:90031476|90032903 hsa-miR-6880-5p 1 1 0
chr16:90031476|90032903 hsa-miR-7847-3p 1 1 0
chr16:90031476|90032903 hsa-miR-6746-5p 1 0 0
chr16:90031476|90032903 hsa-miR-4722-5p 1 1 0
chr16:90031476|90032903 hsa-miR-593-5p 1 1 0
chr16:90031476|90032903 hsa-miR-6727-5p 1 0 0
chr16:90031476|90032903 hsa-miR-6806-5p 1 0 0
chr16:90031476|90032903 hsa-miR-3187-3p 1 0 0
chr16:90031476|90032903 hsa-miR-6721-5p 1 0 0
chr16:90031476|90032903 hsa-miR-8069 1 0 0
chr16:90031476|90032903 hsa-miR-7845-5p 1 0 0
chr16:90031476|90032903 hsa-miR-6874-5p 0 1 0
chr16:90031476|90032903 hsa-miR-3934-3p 0 1 0
chr16:90031476|90032903 hsa-miR-6786-5p 1 0 0
chr16:90031476|90032903 hsa-miR-5088-5p 1 0 0
chr16:90031476|90032903 hsa-miR-1226-5p 1 1 0
chr16:90031476|90032903 hsa-miR-4640-5p 1 0 0
chr16:90031476|90032903 hsa-miR-4756-3p 0 1 0
chr16:90031476|90032903 hsa-miR-877-5p 1 0 0
chr16:90031476|90032903 hsa-miR-2681-3p 1 0 0
chr16:90031476|90032903 hsa-miR-4733-3p 0 1 0
chr16:90031476|90032903 hsa-miR-3616-3p 1 1 0
chr16:90031476|90032903 hsa-miR-3190-5p 0 1 0
chr16:90031476|90032903 hsa-miR-6499-5p 1 0 0
chr16:90031476|90032903 hsa-miR-339-3p 0 1 0
chr16:90031476|90032903 hsa-miR-4761-5p 1 1 0
chr16:90031476|90032903 hsa-miR-2277-5p 1 0 0
chr16:90031476|90032903 hsa-miR-589-3p 0 1 0
chr16:90031476|90032903 hsa-miR-5585-5p 0 1 0
chr16:90031476|90032903 hsa-miR-33a-5p 1 0 0
chr16:90031476|90032903 hsa-miR-4763-3p 1 0 0
chr16:90031476|90032903 hsa-miR-6787-5p 1 0 0
chr16:90031476|90032903 hsa-miR-6726-5p 1 0 0
chr16:90031476|90032903 hsa-miR-6743-5p 1 0 0
chr16:90031476|90032903 hsa-miR-6754-5p 1 0 0
chr16:90031476|90032903 hsa-miR-6756-5p 1 0 0
chr16:90031476|90032903 hsa-miR-6851-5p 1 0 0
chr16:90031476|90032903 hsa-miR-11181-3p 1 0 0
chr16:90031476|90032903 hsa-miR-6722-3p 1 0 0
chr16:90031476|90032903 hsa-miR-6763-5p 1 0 0
chr16:90031476|90032903 hsa-miR-6879-5p 1 0 0
chr16:90031476|90032903 hsa-miR-5189-5p 1 0 0
chr16:90031476|90032903 hsa-miR-6780b-5p 1 0 0
chr16:90031476|90032903 hsa-miR-6836-5p 1 0 0
chr16:90031476|90032903 hsa-miR-10396a-5p 1 0 0
chr16:90031476|90032903 hsa-miR-10396b-5p 1 0 0
chr16:90031476|90032903 hsa-miR-1909-3p 1 0 0
chr16:90031476|90032903 hsa-miR-328-5p 1 0 0
chr16:90031476|90032903 hsa-miR-4632-5p 1 0 0
chr16:90031476|90032903 hsa-miR-4649-5p 1 0 0
chr16:90031476|90032903 hsa-miR-6729-5p 1 0 0
chr16:90031476|90032903 hsa-miR-6735-5p 1 0 0
chr16:90031476|90032903 hsa-miR-6777-5p 1 0 0
chr16:90031476|90032903 hsa-miR-6846-5p 1 0 0
chr16:90031476|90032903 hsa-miR-6848-5p 1 0 0
chr16:90031476|90032903 hsa-miR-6831-5p 1 1 0
chr16:90031476|90032903 hsa-miR-6845-5p 1 0 0
chr16:90031476|90032903 hsa-miR-6885-5p 1 0 0
chr16:90031476|90032903 hsa-miR-6511a-5p 1 0 0
chr16:90031476|90032903 hsa-miR-6511b-5p 1 1 0
chr16:90031476|90032903 hsa-miR-6731-5p 1 0 0
chr16:90031476|90032903 hsa-miR-6856-5p 1 0 0
chr16:90031476|90032903 hsa-miR-541-3p 1 0 0
chr16:90031476|90032903 hsa-miR-9851-3p 1 1 0
chr16:90031476|90032903 hsa-miR-449b-5p 1 0 0
chr16:90031476|90032903 hsa-miR-34c-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr16:90031476|90032903
ORF Type ORF1
Protein Length 46
Nucleotide Length 141
Protein Sequence MLLELHLQCPHVLAQHTLLYAVLFLCQLHDYSALSLHLCQVVLVLI
Nucleotide Sequence CTGCTCCTTGAGCTCCACCTTCAGTGCCCGCATGTCCTTGCGCAGCACACTCTCCTGTATGCGGTGCTCTTTCTGTGCCAGCTTCATGACTACAGTGCCCTCAGCCTTCATCTCTGTCAGGTTGTTCTGGTGCTCATATAG
CircID chr16:90031476|90032903
ORF Type ORF2
Protein Length 66
Nucleotide Length 198
Protein Sequence MASSCSLSSTFSARMSLRSTLSCMRCSFCASFMTTVPSAFISVRLFWCSYSRCFTFCLYTLISTWC
Nucleotide Sequence CTGGCCAGCTCCTGCTCCTTGAGCTCCACCTTCAGTGCCCGCATGTCCTTGCGCAGCACACTCTCCTGTATGCGGTGCTCTTTCTGTGCCAGCTTCATGACTACAGTGCCCTCAGCCTTCATCTCTGTCAGGTTGTTCTGGTGCTCATATAGCAGGTGCTTCACTTTCTGCTTGTACACCTTGATCTCCACCTGGTGC
CircID chr16:90031476|90032903
ORF Type ORF3
Protein Length 54
Nucleotide Length 162
Protein Sequence MLYEHQNNLTEMKAEGTVVMKLAQKEHRIQESVLRKDMRALKVELKEQELASEV
Nucleotide Sequence CTGCTATATGAGCACCAGAACAACCTGACAGAGATGAAGGCTGAGGGCACTGTAGTCATGAAGCTGGCACAGAAAGAGCACCGCATACAGGAGAGTGTGCTGCGCAAGGACATGCGGGCACTGAAGGTGGAGCTCAAGGAGCAGGAGCTGGCCAGTGAGGTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab