CircRNA Information

General Information
circRNA Basic Information
CircID chr16:92596|92706
Strand -
CircType exon
Host Gene ENSG00000103148.14;
Algorism CIRI2;
Sequence CTCCTGCACAGCGGGGGCCAGGGGATTCCTAAATTCTGACAAGGAGACCGGCAAGGAGAACTTGGCAAGAACGGACGGCAGGTCATGAGATGGGAACTGGTGGGAGAACTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr16:92596|92706 hsa-miR-150-5p 0 0 1
chr16:92596|92706 hsa-miR-150-3p 0 0 1
chr16:92596|92706 hsa-miR-631 0 0 1
chr16:92596|92706 hsa-miR-651-5p 0 0 1
chr16:92596|92706 hsa-miR-651-3p 0 0 1
chr16:92596|92706 hsa-miR-1286 0 0 1
chr16:92596|92706 hsa-miR-532-3p 1 0 1
chr16:92596|92706 hsa-miR-1224-3p 0 0 1
chr16:92596|92706 hsa-miR-502-5p 0 0 1
chr16:92596|92706 hsa-miR-331-3p 0 0 1
chr16:92596|92706 hsa-miR-1260 0 0 1
chr16:92596|92706 hsa-miR-1280 0 0 1
chr16:92596|92706 hsa-miR-1260b 0 1 0
chr16:92596|92706 hsa-miR-4313 1 0 0
chr16:92596|92706 hsa-miR-138-5p 1 0 0
chr16:92596|92706 hsa-miR-214-5p 1 0 0
chr16:92596|92706 hsa-miR-6842-3p 1 0 0
chr16:92596|92706 hsa-miR-4713-5p 1 0 0
chr16:92596|92706 hsa-miR-6763-3p 1 0 0
chr16:92596|92706 hsa-miR-1247-5p 1 0 0
chr16:92596|92706 hsa-miR-4446-5p 1 0 0
chr16:92596|92706 hsa-miR-6743-3p 1 0 0
chr16:92596|92706 hsa-miR-6813-3p 1 0 0
chr16:92596|92706 hsa-miR-629-3p 0 1 0
chr16:92596|92706 hsa-miR-4664-3p 1 0 0
chr16:92596|92706 hsa-miR-7151-5p 1 0 0
chr16:92596|92706 hsa-miR-4433a-5p 1 0 0
chr16:92596|92706 hsa-miR-1229-3p 0 1 0
chr16:92596|92706 hsa-miR-4433b-5p 1 0 0
chr16:92596|92706 hsa-miR-6791-5p 1 0 0
chr16:92596|92706 hsa-miR-6511a-3p 1 0 0
chr16:92596|92706 hsa-miR-10401-3p 1 0 0
chr16:92596|92706 hsa-miR-6511b-3p 1 0 0
chr16:92596|92706 hsa-miR-4691-5p 1 0 0
chr16:92596|92706 hsa-miR-6848-3p 1 0 0
chr16:92596|92706 hsa-miR-6833-3p 0 1 0
chr16:92596|92706 hsa-miR-3927-5p 1 0 0
chr16:92596|92706 hsa-miR-217-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr16:92596|92706
ORF Type ORF1
Protein Length 25
Nucleotide Length 75
Protein Sequence MTRRPARRTWQERTAGHEMGTGGRT
Nucleotide Sequence CTGACAAGGAGACCGGCAAGGAGAACTTGGCAAGAACGGACGGCAGGTCATGAGATGGGAACTGGTGGGAGAACT
CircID chr16:92596|92706
ORF Type ORF2
Protein Length 27
Nucleotide Length 81
Protein Sequence MPSVLAKFSLPVSLSEFRNPLAPAVQE
Nucleotide Sequence CTGCCGTCCGTTCTTGCCAAGTTCTCCTTGCCGGTCTCCTTGTCAGAATTTAGGAATCCCCTGGCCCCCGCTGTGCAGGAG
CircID chr16:92596|92706
ORF Type ORF3
Protein Length 28
Nucleotide Length 84
Protein Sequence MTCRPFLPSSPCRSPCQNLGIPWPPLCR
Nucleotide Sequence ATGACCTGCCGTCCGTTCTTGCCAAGTTCTCCTTGCCGGTCTCCTTGTCAGAATTTAGGAATCCCCTGGCCCCCGCTGTGCAGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab