CircRNA Information

General Information
circRNA Basic Information
CircID chr17:1003686|1003910
Strand -
CircType exon
Host Gene ENSG00000159842.13;
Algorism CIRI2;
Sequence CTGTGTATCAGCAGAAACTGGCAGCCATCAGCCATTGCCCAGCAAGAACAGGCAGACCTGGCGTTTCTTAGCCTGACTCCTGCTGGGCACAGCCCACCCTGCTGGGCACAGTGACTGGAGGTTCCAGGCTGCACAGTCCCTGGCTCCTGACTCCTGCCGGGCGCAGTGACTGGAGGTTTCGGGCTGCATGGTCCCCGGCTCACAGGAGACCCTGCTGGGTGTTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:1003686|1003910 hsa-miR-214-5p 0 0 1
chr17:1003686|1003910 hsa-miR-214-3p 0 0 1
chr17:1003686|1003910 hsa-miR-346 0 0 1
chr17:1003686|1003910 hsa-miR-484 0 0 1
chr17:1003686|1003910 hsa-miR-591 0 0 1
chr17:1003686|1003910 hsa-miR-604 0 0 1
chr17:1003686|1003910 hsa-miR-612 0 1 1
chr17:1003686|1003910 hsa-miR-647 0 0 1
chr17:1003686|1003910 hsa-miR-541-5p 0 0 1
chr17:1003686|1003910 hsa-miR-541-3p 0 0 1
chr17:1003686|1003910 hsa-miR-1182 0 1 1
chr17:1003686|1003910 hsa-miR-1208 0 0 1
chr17:1003686|1003910 hsa-miR-654-5p 0 0 1
chr17:1003686|1003910 hsa-miR-1285 0 0 1
chr17:1003686|1003910 hsa-miR-544 0 0 1
chr17:1003686|1003910 hsa-miR-1254 0 0 1
chr17:1003686|1003910 hsa-miR-637 1 0 0
chr17:1003686|1003910 hsa-miR-761 0 1 0
chr17:1003686|1003910 hsa-miR-1203 1 0 0
chr17:1003686|1003910 hsa-miR-3137 1 0 0
chr17:1003686|1003910 hsa-miR-4438 0 1 0
chr17:1003686|1003910 hsa-miR-4530 0 1 0
chr17:1003686|1003910 hsa-miR-1587 0 1 0
chr17:1003686|1003910 hsa-miR-4656 1 0 0
chr17:1003686|1003910 hsa-miR-4673 1 0 0
chr17:1003686|1003910 hsa-miR-4675 1 1 0
chr17:1003686|1003910 hsa-miR-4741 1 1 0
chr17:1003686|1003910 hsa-miR-6165 0 1 0
chr17:1003686|1003910 hsa-miR-6860 1 1 0
chr17:1003686|1003910 hsa-miR-8052 0 1 0
chr17:1003686|1003910 hsa-miR-8075 1 1 0
chr17:1003686|1003910 hsa-miR-4433b-3p 1 0 0
chr17:1003686|1003910 hsa-miR-500b-3p 0 1 0
chr17:1003686|1003910 hsa-miR-4433a-3p 1 1 0
chr17:1003686|1003910 hsa-miR-6510-5p 0 1 0
chr17:1003686|1003910 hsa-miR-4722-5p 1 1 0
chr17:1003686|1003910 hsa-miR-505-5p 0 1 0
chr17:1003686|1003910 hsa-miR-6849-3p 1 0 0
chr17:1003686|1003910 hsa-miR-6827-5p 1 0 0
chr17:1003686|1003910 hsa-miR-4640-5p 1 0 0
chr17:1003686|1003910 hsa-miR-6514-3p 0 1 0
chr17:1003686|1003910 hsa-miR-6771-5p 1 0 0
chr17:1003686|1003910 hsa-miR-1266-3p 0 1 0
chr17:1003686|1003910 hsa-miR-937-5p 1 1 0
chr17:1003686|1003910 hsa-miR-550b-2-5p 0 1 0
chr17:1003686|1003910 hsa-miR-7156-3p 1 1 0
chr17:1003686|1003910 hsa-miR-3120-5p 0 1 0
chr17:1003686|1003910 hsa-miR-3619-3p 0 1 0
chr17:1003686|1003910 hsa-miR-6508-3p 0 1 0
chr17:1003686|1003910 hsa-miR-1914-5p 1 1 0
chr17:1003686|1003910 hsa-miR-4763-3p 1 1 0
chr17:1003686|1003910 hsa-miR-5001-5p 1 0 0
chr17:1003686|1003910 hsa-miR-6756-5p 1 0 0
chr17:1003686|1003910 hsa-miR-6722-3p 1 1 0
chr17:1003686|1003910 hsa-miR-3620-5p 1 1 0
chr17:1003686|1003910 hsa-miR-5189-5p 1 1 0
chr17:1003686|1003910 hsa-miR-3187-5p 0 1 0
chr17:1003686|1003910 hsa-miR-3116 0 1 0
chr17:1003686|1003910 hsa-miR-6762-5p 1 1 0
chr17:1003686|1003910 hsa-miR-3619-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:1003686|1003910
ORF Type ORF1
Protein Length 37
Nucleotide Length 114
Protein Sequence LCISRNWQPSAIAQQEQADLAFLSLTPAGHSPPCWAQ
Nucleotide Sequence CTGTGTATCAGCAGAAACTGGCAGCCATCAGCCATTGCCCAGCAAGAACAGGCAGACCTGGCGTTTCTTAGCCTGACTCCTGCTGGGCACAGCCCACCCTGCTGGGCACAGTGA
CircID chr17:1003686|1003910
ORF Type ORF2
Protein Length 29
Nucleotide Length 90
Protein Sequence MLGTAHPAGHSDWRFQAAQSLAPDSCRAQ
Nucleotide Sequence CTGCTGGGCACAGCCCACCCTGCTGGGCACAGTGACTGGAGGTTCCAGGCTGCACAGTCCCTGGCTCCTGACTCCTGCCGGGCGCAGTGA
CircID chr17:1003686|1003910
ORF Type ORF3
Protein Length 42
Nucleotide Length 126
Protein Sequence MLGTVTGGSRLHSPWLLTPAGRSDWRFRAAWSPAHRRPCWVF
Nucleotide Sequence CTGCTGGGCACAGTGACTGGAGGTTCCAGGCTGCACAGTCCCTGGCTCCTGACTCCTGCCGGGCGCAGTGACTGGAGGTTTCGGGCTGCATGGTCCCCGGCTCACAGGAGACCCTGCTGGGTGTTT
CircID chr17:1003686|1003910
ORF Type ORF4
Protein Length 53
Nucleotide Length 162
Protein Sequence MQPETSSHCARQESGARDCAAWNLQSLCPAGWAVPSRSQAKKRQVCLFLLGNG
Nucleotide Sequence ATGCAGCCCGAAACCTCCAGTCACTGCGCCCGGCAGGAGTCAGGAGCCAGGGACTGTGCAGCCTGGAACCTCCAGTCACTGTGCCCAGCAGGGTGGGCTGTGCCCAGCAGGAGTCAGGCTAAGAAACGCCAGGTCTGCCTGTTCTTGCTGGGCAATGGCTGA
CircID chr17:1003686|1003910
ORF Type ORF5
Protein Length 30
Nucleotide Length 90
Protein Sequence MCPAGVRLRNARSACSCWAMADGCQFLLIH
Nucleotide Sequence CTGTGCCCAGCAGGAGTCAGGCTAAGAAACGCCAGGTCTGCCTGTTCTTGCTGGGCAATGGCTGATGGCTGCCAGTTTCTGCTGATACAC
CircID chr17:1003686|1003910
ORF Type ORF6
Protein Length 32
Nucleotide Length 99
Protein Sequence MRPAGVRSQGLCSLEPPVTVPSRVGCAQQESG
Nucleotide Sequence CTGCGCCCGGCAGGAGTCAGGAGCCAGGGACTGTGCAGCCTGGAACCTCCAGTCACTGTGCCCAGCAGGGTGGGCTGTGCCCAGCAGGAGTCAGGCTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab