CircRNA Information

General Information
circRNA Basic Information
CircID chr17:1003856|1004006
Strand -
CircType exon
Host Gene ENSG00000159842.13;
Algorism CIRI2;
Sequence TGGAGGTTTCGGGCTGCATGGTCCCCGGCTCACAGGAGACCCTGCTGGGTGTTTCCTTGGTGCAGTTTAGTCCAGGTCTGGCACCTGACCCTCCCCACTCTGGGGGTGGGATTTATAAATATGAGCCTTTGCATTTCTCAGCCTTTGCAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:1003856|1004006 hsa-miR-214-5p 0 0 1
chr17:1003856|1004006 hsa-miR-214-3p 0 0 1
chr17:1003856|1004006 hsa-miR-340-5p 0 0 1
chr17:1003856|1004006 hsa-miR-340-3p 0 0 1
chr17:1003856|1004006 hsa-miR-422a 0 0 1
chr17:1003856|1004006 hsa-miR-527 0 0 1
chr17:1003856|1004006 hsa-miR-539-5p 0 0 1
chr17:1003856|1004006 hsa-miR-539-3p 0 0 1
chr17:1003856|1004006 hsa-miR-591 0 0 1
chr17:1003856|1004006 hsa-miR-605-5p 0 0 1
chr17:1003856|1004006 hsa-miR-605-3p 0 0 1
chr17:1003856|1004006 hsa-miR-619-5p 0 0 1
chr17:1003856|1004006 hsa-miR-619-3p 0 0 1
chr17:1003856|1004006 hsa-miR-631 0 1 1
chr17:1003856|1004006 hsa-miR-939-5p 0 0 1
chr17:1003856|1004006 hsa-miR-939-3p 0 0 1
chr17:1003856|1004006 hsa-miR-1182 0 1 1
chr17:1003856|1004006 hsa-miR-548g-5p 0 0 1
chr17:1003856|1004006 hsa-miR-548g-3p 0 0 1
chr17:1003856|1004006 hsa-miR-1279 0 0 1
chr17:1003856|1004006 hsa-miR-125a-3p 0 0 1
chr17:1003856|1004006 hsa-miR-491-5p 0 0 1
chr17:1003856|1004006 hsa-miR-767-5p 0 0 1
chr17:1003856|1004006 hsa-miR-361-3p 0 0 1
chr17:1003856|1004006 hsa-miR-1224-3p 0 0 1
chr17:1003856|1004006 hsa-miR-518a-5p 0 0 1
chr17:1003856|1004006 hsa-miR-1260 0 0 1
chr17:1003856|1004006 hsa-miR-1280 0 0 1
chr17:1003856|1004006 hsa-miR-378 0 0 1
chr17:1003856|1004006 hsa-miR-484 1 0 0
chr17:1003856|1004006 hsa-miR-761 0 1 0
chr17:1003856|1004006 hsa-miR-764 0 1 0
chr17:1003856|1004006 hsa-miR-940 1 0 0
chr17:1003856|1004006 hsa-miR-1269a 0 1 0
chr17:1003856|1004006 hsa-miR-3661 0 1 0
chr17:1003856|1004006 hsa-miR-3929 1 0 0
chr17:1003856|1004006 hsa-miR-4437 1 0 0
chr17:1003856|1004006 hsa-miR-4466 1 0 0
chr17:1003856|1004006 hsa-miR-4515 1 0 0
chr17:1003856|1004006 hsa-miR-4539 1 0 0
chr17:1003856|1004006 hsa-miR-4656 1 0 0
chr17:1003856|1004006 hsa-miR-5787 1 0 0
chr17:1003856|1004006 hsa-miR-7974 1 0 0
chr17:1003856|1004006 hsa-miR-8077 1 0 0
chr17:1003856|1004006 hsa-miR-500b-3p 0 1 0
chr17:1003856|1004006 hsa-miR-6825-5p 0 1 0
chr17:1003856|1004006 hsa-miR-6857-5p 1 0 0
chr17:1003856|1004006 hsa-miR-4708-5p 1 0 0
chr17:1003856|1004006 hsa-miR-486-5p 1 0 0
chr17:1003856|1004006 hsa-miR-3126-5p 0 1 0
chr17:1003856|1004006 hsa-miR-3130-3p 0 1 0
chr17:1003856|1004006 hsa-miR-2467-3p 1 1 0
chr17:1003856|1004006 hsa-miR-204-3p 1 1 0
chr17:1003856|1004006 hsa-miR-4640-5p 1 0 0
chr17:1003856|1004006 hsa-miR-6771-5p 1 0 0
chr17:1003856|1004006 hsa-miR-3690 0 1 0
chr17:1003856|1004006 hsa-miR-4446-3p 1 0 0
chr17:1003856|1004006 hsa-miR-149-3p 0 1 0
chr17:1003856|1004006 hsa-miR-3619-3p 0 1 0
chr17:1003856|1004006 hsa-miR-1288-5p 1 0 0
chr17:1003856|1004006 hsa-miR-6508-3p 0 1 0
chr17:1003856|1004006 hsa-miR-3156-3p 0 1 0
chr17:1003856|1004006 hsa-miR-1207-5p 1 0 0
chr17:1003856|1004006 hsa-miR-4763-3p 0 1 0
chr17:1003856|1004006 hsa-miR-6726-5p 1 0 0
chr17:1003856|1004006 hsa-miR-6722-3p 1 0 0
chr17:1003856|1004006 hsa-miR-6763-5p 0 1 0
chr17:1003856|1004006 hsa-miR-4685-5p 1 0 0
chr17:1003856|1004006 hsa-miR-6883-5p 0 1 0
chr17:1003856|1004006 hsa-miR-6889-5p 0 1 0
chr17:1003856|1004006 hsa-miR-3085-5p 1 0 0
chr17:1003856|1004006 hsa-miR-6884-5p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr17:1003856|1004006
ORF Type ORF1
Protein Length 44
Nucleotide Length 132
Protein Sequence MVPGSQETLLGVSLVQFSPGLAPDPPHSGGGIYKYEPLHFSAFA
Nucleotide Sequence ATGGTCCCCGGCTCACAGGAGACCCTGCTGGGTGTTTCCTTGGTGCAGTTTAGTCCAGGTCTGGCACCTGACCCTCCCCACTCTGGGGGTGGGATTTATAAATATGAGCCTTTGCATTTCTCAGCCTTTGCA
CircID chr17:1003856|1004006
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence LQRLRNAKAHIYKSHPQSGEGQVPDLD
Nucleotide Sequence CTGCAAAGGCTGAGAAATGCAAAGGCTCATATTTATAAATCCCACCCCCAGAGTGGGGAGGGTCAGGTGCCAGACCTGGACTAA
CircID chr17:1003856|1004006
ORF Type ORF3
Protein Length 34
Nucleotide Length 105
Protein Sequence MQRLIFINPTPRVGRVRCQTWTKLHQGNTQQGLL
Nucleotide Sequence ATGCAAAGGCTCATATTTATAAATCCCACCCCCAGAGTGGGGAGGGTCAGGTGCCAGACCTGGACTAAACTGCACCAAGGAAACACCCAGCAGGGTCTCCTGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab