CircRNA Information

General Information
circRNA Basic Information
CircID chr17:1005607|1005870
Strand +
CircType exon
Host Gene ENSG00000159842.13;
Algorism CIRI2;
Sequence CTCCTGCCCTCCATACCTCTAGTTGTGTCTGATGCTCCGTGCTGTTCGGGAATTGTTTTATGTACACTTGTCAGGCAGAAAAGGTAGTGACCGGCCCGGCGTGGGCACACAGACAGCCCGCTTTGTTCTTTCATTTCCTCCAGCACTTTCTTTCCGCCTGAGTCCAGCCCAAGGCCTTTTATTTTGCGCTGTGTAACTGCTGCCAGCTTCTCTCTTGGCCCTGCTCCCAGATGGCGGTCTCCTGGCAGCCTCCCCTCAGTCTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:1005607|1005870 hsa-miR-17-5p 0 0 1
chr17:1005607|1005870 hsa-miR-17-3p 0 0 1
chr17:1005607|1005870 hsa-miR-20a-5p 0 0 1
chr17:1005607|1005870 hsa-miR-20a-3p 0 0 1
chr17:1005607|1005870 hsa-miR-93-5p 0 0 1
chr17:1005607|1005870 hsa-miR-93-3p 0 0 1
chr17:1005607|1005870 hsa-miR-106a-5p 0 0 1
chr17:1005607|1005870 hsa-miR-106a-3p 0 0 1
chr17:1005607|1005870 hsa-miR-106b-5p 0 0 1
chr17:1005607|1005870 hsa-miR-106b-3p 0 0 1
chr17:1005607|1005870 hsa-miR-302a-5p 0 0 1
chr17:1005607|1005870 hsa-miR-302a-3p 0 0 1
chr17:1005607|1005870 hsa-miR-302b-5p 0 0 1
chr17:1005607|1005870 hsa-miR-302b-3p 0 0 1
chr17:1005607|1005870 hsa-miR-302c-5p 0 0 1
chr17:1005607|1005870 hsa-miR-302c-3p 0 0 1
chr17:1005607|1005870 hsa-miR-302d-5p 0 0 1
chr17:1005607|1005870 hsa-miR-302d-3p 0 0 1
chr17:1005607|1005870 hsa-miR-372-5p 0 0 1
chr17:1005607|1005870 hsa-miR-372-3p 0 0 1
chr17:1005607|1005870 hsa-miR-373-5p 0 0 1
chr17:1005607|1005870 hsa-miR-373-3p 0 0 1
chr17:1005607|1005870 hsa-miR-422a 1 1 1
chr17:1005607|1005870 hsa-miR-20b-5p 0 0 1
chr17:1005607|1005870 hsa-miR-20b-3p 0 0 1
chr17:1005607|1005870 hsa-miR-202-5p 0 0 1
chr17:1005607|1005870 hsa-miR-202-3p 0 0 1
chr17:1005607|1005870 hsa-miR-520e-5p 0 0 1
chr17:1005607|1005870 hsa-miR-520e-3p 0 0 1
chr17:1005607|1005870 hsa-miR-520b-5p 0 0 1
chr17:1005607|1005870 hsa-miR-520b-3p 0 0 1
chr17:1005607|1005870 hsa-miR-519d-5p 0 0 1
chr17:1005607|1005870 hsa-miR-519d-3p 0 0 1
chr17:1005607|1005870 hsa-miR-510-5p 0 0 1
chr17:1005607|1005870 hsa-miR-510-3p 0 0 1
chr17:1005607|1005870 hsa-miR-626 0 0 1
chr17:1005607|1005870 hsa-miR-635 0 0 1
chr17:1005607|1005870 hsa-miR-765 0 0 1
chr17:1005607|1005870 hsa-miR-665 0 0 1
chr17:1005607|1005870 hsa-miR-920 0 0 1
chr17:1005607|1005870 hsa-miR-935 0 0 1
chr17:1005607|1005870 hsa-miR-1287-5p 0 0 1
chr17:1005607|1005870 hsa-miR-1287-3p 0 0 1
chr17:1005607|1005870 hsa-miR-302e 0 0 1
chr17:1005607|1005870 hsa-miR-1324 0 0 1
chr17:1005607|1005870 hsa-miR-512-3p 0 0 1
chr17:1005607|1005870 hsa-miR-885-3p 1 0 1
chr17:1005607|1005870 hsa-miR-485-5p 0 1 1
chr17:1005607|1005870 hsa-miR-423-5p 0 0 1
chr17:1005607|1005870 hsa-miR-520d-3p 0 0 1
chr17:1005607|1005870 hsa-miR-520a-3p 0 0 1
chr17:1005607|1005870 hsa-miR-520c-3p 0 0 1
chr17:1005607|1005870 hsa-miR-378 0 0 1
chr17:1005607|1005870 hsa-miR-544 0 0 1
chr17:1005607|1005870 hsa-miR-1201 0 0 1
chr17:1005607|1005870 hsa-miR-637 1 0 0
chr17:1005607|1005870 hsa-miR-663a 1 0 0
chr17:1005607|1005870 hsa-miR-762 1 0 0
chr17:1005607|1005870 hsa-miR-1295a 1 0 0
chr17:1005607|1005870 hsa-miR-1275 1 0 0
chr17:1005607|1005870 hsa-miR-3138 1 0 0
chr17:1005607|1005870 hsa-miR-378c 1 0 0
chr17:1005607|1005870 hsa-miR-3652 1 0 0
chr17:1005607|1005870 hsa-miR-3937 1 0 0
chr17:1005607|1005870 hsa-miR-4430 1 0 0
chr17:1005607|1005870 hsa-miR-4492 1 0 0
chr17:1005607|1005870 hsa-miR-4498 1 0 0
chr17:1005607|1005870 hsa-miR-4505 1 0 0
chr17:1005607|1005870 hsa-miR-4507 1 0 0
chr17:1005607|1005870 hsa-miR-4515 1 0 0
chr17:1005607|1005870 hsa-miR-1587 1 0 0
chr17:1005607|1005870 hsa-miR-4647 1 0 0
chr17:1005607|1005870 hsa-miR-4656 1 0 0
chr17:1005607|1005870 hsa-miR-4672 1 0 0
chr17:1005607|1005870 hsa-miR-4741 1 0 0
chr17:1005607|1005870 hsa-miR-5093 0 1 0
chr17:1005607|1005870 hsa-miR-5739 1 0 0
chr17:1005607|1005870 hsa-miR-5787 1 0 0
chr17:1005607|1005870 hsa-miR-6081 1 1 0
chr17:1005607|1005870 hsa-miR-6090 1 0 0
chr17:1005607|1005870 hsa-miR-8073 1 0 0
chr17:1005607|1005870 hsa-miR-8089 1 0 0
chr17:1005607|1005870 hsa-miR-12119 1 0 0
chr17:1005607|1005870 hsa-miR-6734-5p 0 1 0
chr17:1005607|1005870 hsa-miR-6765-5p 1 0 0
chr17:1005607|1005870 hsa-miR-6825-5p 0 1 0
chr17:1005607|1005870 hsa-miR-6894-5p 1 0 0
chr17:1005607|1005870 hsa-miR-6854-5p 1 0 0
chr17:1005607|1005870 hsa-miR-6510-5p 1 1 0
chr17:1005607|1005870 hsa-miR-7851-3p 1 0 0
chr17:1005607|1005870 hsa-miR-6515-5p 1 1 0
chr17:1005607|1005870 hsa-miR-6089 1 0 0
chr17:1005607|1005870 hsa-miR-3192-5p 1 0 0
chr17:1005607|1005870 hsa-miR-6880-5p 1 0 0
chr17:1005607|1005870 hsa-miR-7847-3p 0 1 0
chr17:1005607|1005870 hsa-miR-4722-5p 1 0 0
chr17:1005607|1005870 hsa-miR-6727-5p 1 0 0
chr17:1005607|1005870 hsa-miR-4711-5p 0 1 0
chr17:1005607|1005870 hsa-miR-3180-3p 1 0 0
chr17:1005607|1005870 hsa-miR-6798-5p 1 0 0
chr17:1005607|1005870 hsa-miR-6760-5p 1 1 0
chr17:1005607|1005870 hsa-miR-6810-5p 1 0 0
chr17:1005607|1005870 hsa-miR-5088-5p 1 0 0
chr17:1005607|1005870 hsa-miR-7109-5p 0 1 0
chr17:1005607|1005870 hsa-miR-1229-5p 1 0 0
chr17:1005607|1005870 hsa-miR-4640-5p 1 0 0
chr17:1005607|1005870 hsa-miR-1228-5p 1 0 0
chr17:1005607|1005870 hsa-miR-6501-5p 1 1 0
chr17:1005607|1005870 hsa-miR-149-3p 1 0 0
chr17:1005607|1005870 hsa-miR-6824-5p 1 1 0
chr17:1005607|1005870 hsa-miR-4715-5p 1 1 0
chr17:1005607|1005870 hsa-miR-6877-5p 1 0 0
chr17:1005607|1005870 hsa-miR-6895-5p 0 1 0
chr17:1005607|1005870 hsa-miR-664b-5p 1 1 0
chr17:1005607|1005870 hsa-miR-7846-3p 1 0 0
chr17:1005607|1005870 hsa-miR-1250-5p 1 0 0
chr17:1005607|1005870 hsa-miR-744-5p 1 0 0
chr17:1005607|1005870 hsa-miR-4750-5p 1 0 0
chr17:1005607|1005870 hsa-miR-483-5p 1 0 0
chr17:1005607|1005870 hsa-miR-6738-3p 1 0 0
chr17:1005607|1005870 hsa-miR-2277-5p 1 0 0
chr17:1005607|1005870 hsa-miR-3177-5p 1 0 0
chr17:1005607|1005870 hsa-miR-4763-3p 1 0 0
chr17:1005607|1005870 hsa-miR-6775-5p 1 0 0
chr17:1005607|1005870 hsa-miR-5001-5p 1 1 0
chr17:1005607|1005870 hsa-miR-6743-5p 1 0 0
chr17:1005607|1005870 hsa-miR-1249-5p 1 0 0
chr17:1005607|1005870 hsa-miR-6774-5p 0 1 0
chr17:1005607|1005870 hsa-miR-6779-5p 1 0 0
chr17:1005607|1005870 hsa-miR-6797-5p 1 0 0
chr17:1005607|1005870 hsa-miR-3620-5p 1 0 0
chr17:1005607|1005870 hsa-miR-5189-5p 1 0 0
chr17:1005607|1005870 hsa-miR-6836-5p 1 1 0
chr17:1005607|1005870 hsa-miR-10396b-5p 1 0 0
chr17:1005607|1005870 hsa-miR-328-5p 1 0 0
chr17:1005607|1005870 hsa-miR-4726-5p 1 0 0
chr17:1005607|1005870 hsa-miR-6858-5p 0 1 0
chr17:1005607|1005870 hsa-miR-939-5p 1 0 0
chr17:1005607|1005870 hsa-miR-1266-5p 1 0 0
chr17:1005607|1005870 hsa-miR-3940-5p 1 0 0
chr17:1005607|1005870 hsa-miR-6856-5p 0 1 0
chr17:1005607|1005870 hsa-miR-1914-3p 1 0 0
chr17:1005607|1005870 hsa-miR-4646-5p 1 0 0
chr17:1005607|1005870 hsa-miR-378a-3p 0 1 0
chr17:1005607|1005870 hsa-miR-4716-3p 1 0 0
chr17:1005607|1005870 hsa-miR-9851-5p 0 1 0
chr17:1005607|1005870 hsa-miR-10400-3p 1 0 0
chr17:1005607|1005870 hsa-miR-6837-5p 0 1 0
chr17:1005607|1005870 hsa-miR-6817-5p 1 0 0
chr17:1005607|1005870 hsa-miR-6876-3p 0 1 0
chr17:1005607|1005870 hsa-miR-6715b-5p 0 1 0
chr17:1005607|1005870 hsa-miR-130b-3p 0 1 0
chr17:1005607|1005870 hsa-miR-130a-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:1005607|1005870
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence MPSIPLVVSDAPCCSGIVLCTLVRQKR
Nucleotide Sequence CTGCCCTCCATACCTCTAGTTGTGTCTGATGCTCCGTGCTGTTCGGGAATTGTTTTATGTACACTTGTCAGGCAGAAAAGGTAG
CircID chr17:1005607|1005870
ORF Type ORF2
Protein Length 27
Nucleotide Length 81
Protein Sequence MRCVTAASFSLGPAPRWRSPGSLPSVF
Nucleotide Sequence TTGCGCTGTGTAACTGCTGCCAGCTTCTCTCTTGGCCCTGCTCCCAGATGGCGGTCTCCTGGCAGCCTCCCCTCAGTCTTC
CircID chr17:1005607|1005870
ORF Type ORF3
Protein Length 57
Nucleotide Length 174
Protein Sequence MCLMLRAVRELFYVHLSGRKGSDRPGVGTQTARFVLSFPPALSFRLSPAQGLLFCAV
Nucleotide Sequence TTGTGTCTGATGCTCCGTGCTGTTCGGGAATTGTTTTATGTACACTTGTCAGGCAGAAAAGGTAGTGACCGGCCCGGCGTGGGCACACAGACAGCCCGCTTTGTTCTTTCATTTCCTCCAGCACTTTCTTTCCGCCTGAGTCCAGCCCAAGGCCTTTTATTTTGCGCTGTGTAA
CircID chr17:1005607|1005870
ORF Type ORF4
Protein Length 39
Nucleotide Length 120
Protein Sequence MFGNCFMYTCQAEKVVTGPAWAHRQPALFFHFLQHFLSA
Nucleotide Sequence CTGTTCGGGAATTGTTTTATGTACACTTGTCAGGCAGAAAAGGTAGTGACCGGCCCGGCGTGGGCACACAGACAGCCCGCTTTGTTCTTTCATTTCCTCCAGCACTTTCTTTCCGCCTGA
CircID chr17:1005607|1005870
ORF Type ORF5
Protein Length 25
Nucleotide Length 75
Protein Sequence MCNCCQLLSWPCSQMAVSWQPPLSL
Nucleotide Sequence CTGTGTAACTGCTGCCAGCTTCTCTCTTGGCCCTGCTCCCAGATGGCGGTCTCCTGGCAGCCTCCCCTCAGTCTT
CircID chr17:1005607|1005870
ORF Type ORF6
Protein Length 82
Nucleotide Length 246
Protein Sequence MPGDRHLGAGPREKLAAVTQRKIKGLGLDSGGKKVLEEMKEQSGLSVCPRRAGHYLFCLTSVHKTIPEQHGASDTTRGMEGR
Nucleotide Sequence CTGCCAGGAGACCGCCATCTGGGAGCAGGGCCAAGAGAGAAGCTGGCAGCAGTTACACAGCGCAAAATAAAAGGCCTTGGGCTGGACTCAGGCGGAAAGAAAGTGCTGGAGGAAATGAAAGAACAAAGCGGGCTGTCTGTGTGCCCACGCCGGGCCGGTCACTACCTTTTCTGCCTGACAAGTGTACATAAAACAATTCCCGAACAGCACGGAGCATCAGACACAACTAGAGGTATGGAGGGCAGG
CircID chr17:1005607|1005870
ORF Type ORF7
Protein Length 26
Nucleotide Length 81
Protein Sequence MRGGCQETAIWEQGQERSWQQLHSAK
Nucleotide Sequence CTGAGGGGAGGCTGCCAGGAGACCGCCATCTGGGAGCAGGGCCAAGAGAGAAGCTGGCAGCAGTTACACAGCGCAAAATAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab