CircRNA Information

General Information
circRNA Basic Information
CircID chr17:1468253|1468487
Strand -
CircType exon
Host Gene ENSG00000197879.13;
Algorism CIRI2;
Sequence CTGAATGGGCTCAGAGCCCAAGGCCTGCAGCACTCGGGGGCTGATCTCATCTGTACCTGCAACTCAGATGGCGGGGAGGGAAGTCAGTGGAGGCAATGGGGGACCAGGATGGTGACGAAAGGTCTGAGTGCTGGAAAGTCAGGGGCTCACCAAGCCGAGTGCTGATGAAGAGCCTGGGTACACTCTGAGGGTAATTATCCTTCTTGCCCTTGAAGATCTCACTAGCCACGGCCTT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:1468253|1468487 hsa-miR-31-5p 0 0 1
chr17:1468253|1468487 hsa-miR-31-3p 0 0 1
chr17:1468253|1468487 hsa-miR-484 0 0 1
chr17:1468253|1468487 hsa-miR-571 0 0 1
chr17:1468253|1468487 hsa-miR-617 0 0 1
chr17:1468253|1468487 hsa-miR-635 0 1 1
chr17:1468253|1468487 hsa-miR-657 0 0 1
chr17:1468253|1468487 hsa-miR-760 0 1 1
chr17:1468253|1468487 hsa-miR-921 0 0 1
chr17:1468253|1468487 hsa-miR-1205 0 1 1
chr17:1468253|1468487 hsa-miR-1225-3p 0 1 1
chr17:1468253|1468487 hsa-miR-512-3p 0 0 1
chr17:1468253|1468487 hsa-miR-361-3p 0 0 1
chr17:1468253|1468487 hsa-miR-338-3p 0 0 1
chr17:1468253|1468487 hsa-miR-1233 0 0 1
chr17:1468253|1468487 hsa-miR-642 0 0 1
chr17:1468253|1468487 hsa-miR-219-1-3p 0 0 1
chr17:1468253|1468487 hsa-miR-637 1 0 0
chr17:1468253|1468487 hsa-miR-1291 1 0 0
chr17:1468253|1468487 hsa-miR-1268a 1 0 0
chr17:1468253|1468487 hsa-miR-1470 1 0 0
chr17:1468253|1468487 hsa-miR-1913 1 0 0
chr17:1468253|1468487 hsa-miR-718 1 0 0
chr17:1468253|1468487 hsa-miR-3142 0 1 0
chr17:1468253|1468487 hsa-miR-3155a 0 1 0
chr17:1468253|1468487 hsa-miR-3921 0 1 0
chr17:1468253|1468487 hsa-miR-3943 0 1 0
chr17:1468253|1468487 hsa-miR-1268b 1 0 0
chr17:1468253|1468487 hsa-miR-3155b 0 1 0
chr17:1468253|1468487 hsa-miR-5683 0 1 0
chr17:1468253|1468487 hsa-miR-5787 1 0 0
chr17:1468253|1468487 hsa-miR-22-5p 0 1 0
chr17:1468253|1468487 hsa-miR-6749-3p 1 0 0
chr17:1468253|1468487 hsa-miR-132-5p 0 1 0
chr17:1468253|1468487 hsa-miR-4726-3p 1 0 0
chr17:1468253|1468487 hsa-miR-6836-3p 1 1 0
chr17:1468253|1468487 hsa-miR-6822-3p 1 0 0
chr17:1468253|1468487 hsa-miR-210-5p 0 1 0
chr17:1468253|1468487 hsa-miR-486-5p 1 0 0
chr17:1468253|1468487 hsa-miR-6806-5p 1 0 0
chr17:1468253|1468487 hsa-miR-6787-3p 1 0 0
chr17:1468253|1468487 hsa-miR-6845-3p 1 0 0
chr17:1468253|1468487 hsa-miR-877-3p 1 0 0
chr17:1468253|1468487 hsa-miR-4655-3p 1 0 0
chr17:1468253|1468487 hsa-miR-2467-5p 1 1 0
chr17:1468253|1468487 hsa-miR-7855-5p 0 1 0
chr17:1468253|1468487 hsa-miR-6788-3p 1 0 0
chr17:1468253|1468487 hsa-miR-4436b-5p 1 0 0
chr17:1468253|1468487 hsa-miR-939-3p 1 0 0
chr17:1468253|1468487 hsa-miR-4793-5p 0 1 0
chr17:1468253|1468487 hsa-miR-6763-3p 1 0 0
chr17:1468253|1468487 hsa-miR-1247-5p 1 0 0
chr17:1468253|1468487 hsa-miR-7113-3p 1 0 0
chr17:1468253|1468487 hsa-miR-5196-3p 1 0 0
chr17:1468253|1468487 hsa-miR-6825-3p 1 0 0
chr17:1468253|1468487 hsa-miR-3189-3p 0 1 0
chr17:1468253|1468487 hsa-miR-4776-3p 0 1 0
chr17:1468253|1468487 hsa-miR-2115-5p 1 0 0
chr17:1468253|1468487 hsa-miR-4638-5p 0 1 0
chr17:1468253|1468487 hsa-miR-4732-3p 0 1 0
chr17:1468253|1468487 hsa-miR-6778-3p 1 0 0
chr17:1468253|1468487 hsa-miR-744-5p 1 0 0
chr17:1468253|1468487 hsa-miR-383-3p 0 1 0
chr17:1468253|1468487 hsa-miR-6752-3p 1 0 0
chr17:1468253|1468487 hsa-miR-6782-3p 0 1 0
chr17:1468253|1468487 hsa-miR-7848-3p 0 1 0
chr17:1468253|1468487 hsa-miR-6812-3p 1 0 0
chr17:1468253|1468487 hsa-miR-6800-3p 1 0 0
chr17:1468253|1468487 hsa-miR-6509-3p 0 1 0
chr17:1468253|1468487 hsa-miR-4685-3p 1 0 0
chr17:1468253|1468487 hsa-miR-4649-5p 1 0 0
chr17:1468253|1468487 hsa-miR-6791-3p 1 0 0
chr17:1468253|1468487 hsa-miR-6792-3p 1 0 0
chr17:1468253|1468487 hsa-miR-10401-3p 1 0 0
chr17:1468253|1468487 hsa-miR-6810-3p 1 0 0
chr17:1468253|1468487 hsa-miR-10392-3p 1 0 0
chr17:1468253|1468487 hsa-miR-10394-5p 0 1 0
chr17:1468253|1468487 hsa-miR-4690-3p 1 0 0
chr17:1468253|1468487 hsa-miR-6811-5p 0 1 0
chr17:1468253|1468487 hsa-miR-6843-3p 0 1 0
chr17:1468253|1468487 hsa-miR-6820-3p 1 1 0
chr17:1468253|1468487 hsa-miR-301a-5p 0 1 0
chr17:1468253|1468487 hsa-miR-1245b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:1468253|1468487
ORF Type ORF1
Protein Length 54
Nucleotide Length 165
Protein Sequence LNGLRAQGLQHSGADLICTCNSDGGEGSQWRQWGTRMVTKGLSAGKSGAHQAEC
Nucleotide Sequence CTGAATGGGCTCAGAGCCCAAGGCCTGCAGCACTCGGGGGCTGATCTCATCTGTACCTGCAACTCAGATGGCGGGGAGGGAAGTCAGTGGAGGCAATGGGGGACCAGGATGGTGACGAAAGGTCTGAGTGCTGGAAAGTCAGGGGCTCACCAAGCCGAGTGCTGA
CircID chr17:1468253|1468487
ORF Type ORF2
Protein Length 36
Nucleotide Length 111
Protein Sequence MGSEPKACSTRGLISSVPATQMAGREVSGGNGGPGW
Nucleotide Sequence ATGGGCTCAGAGCCCAAGGCCTGCAGCACTCGGGGGCTGATCTCATCTGTACCTGCAACTCAGATGGCGGGGAGGGAAGTCAGTGGAGGCAATGGGGGACCAGGATGGTGA
CircID chr17:1468253|1468487
ORF Type ORF3
Protein Length 35
Nucleotide Length 105
Protein Sequence MESQGLTKPSADEEPGYTLRVIILLALEDLTSHGL
Nucleotide Sequence CTGGAAAGTCAGGGGCTCACCAAGCCGAGTGCTGATGAAGAGCCTGGGTACACTCTGAGGGTAATTATCCTTCTTGCCCTTGAAGATCTCACTAGCCACGGCCTT
CircID chr17:1468253|1468487
ORF Type ORF4
Protein Length 45
Nucleotide Length 138
Protein Sequence MYLQLRWRGGKSVEAMGDQDGDERSECWKVRGSPSRVLMKSLGTL
Nucleotide Sequence CTGTACCTGCAACTCAGATGGCGGGGAGGGAAGTCAGTGGAGGCAATGGGGGACCAGGATGGTGACGAAAGGTCTGAGTGCTGGAAAGTCAGGGGCTCACCAAGCCGAGTGCTGATGAAGAGCCTGGGTACACTCTGA
CircID chr17:1468253|1468487
ORF Type ORF5
Protein Length 31
Nucleotide Length 96
Protein Sequence MTFQHSDLSSPSWSPIASTDFPPRHLSCRYR
Nucleotide Sequence CTGACTTTCCAGCACTCAGACCTTTCGTCACCATCCTGGTCCCCCATTGCCTCCACTGACTTCCCTCCCCGCCATCTGAGTTGCAGGTACAGATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab