CircRNA Information

General Information
circRNA Basic Information
CircID chr17:16101428|16101610
Strand -
CircType exon
Host Gene ENSG00000141027.19;
Algorism CIRI2;
Sequence CTTCAACTTTAGATGCATGGTTTTCTGGCACCCTCACTTCAACGTCCACAGAGTCAGCTTTGGTAGCGGGTGGGGGATCACAAACAGAACCCTCTTCAGCACTGTGCTCCTGCTGATCTACATCCATCTGCTCTGCTGTCTCAGCACTGATGCTGTCATTCACCTGGGTCTCCACACTTTCAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:16101428|16101610 hsa-miR-148a-5p 0 0 1
chr17:16101428|16101610 hsa-miR-148a-3p 0 0 1
chr17:16101428|16101610 hsa-miR-214-5p 0 0 1
chr17:16101428|16101610 hsa-miR-214-3p 0 0 1
chr17:16101428|16101610 hsa-miR-152-5p 0 0 1
chr17:16101428|16101610 hsa-miR-152-3p 0 0 1
chr17:16101428|16101610 hsa-miR-320a-5p 0 0 1
chr17:16101428|16101610 hsa-miR-320a-3p 0 0 1
chr17:16101428|16101610 hsa-miR-148b-5p 0 0 1
chr17:16101428|16101610 hsa-miR-148b-3p 0 0 1
chr17:16101428|16101610 hsa-miR-345-5p 0 0 1
chr17:16101428|16101610 hsa-miR-345-3p 0 0 1
chr17:16101428|16101610 hsa-miR-561-5p 0 0 1
chr17:16101428|16101610 hsa-miR-561-3p 0 0 1
chr17:16101428|16101610 hsa-miR-573 0 0 1
chr17:16101428|16101610 hsa-miR-595 0 0 1
chr17:16101428|16101610 hsa-miR-758-5p 0 0 1
chr17:16101428|16101610 hsa-miR-758-3p 0 0 1
chr17:16101428|16101610 hsa-miR-922 0 1 1
chr17:16101428|16101610 hsa-miR-1257 0 0 1
chr17:16101428|16101610 hsa-miR-125a-3p 0 0 1
chr17:16101428|16101610 hsa-miR-512-3p 0 1 1
chr17:16101428|16101610 hsa-miR-361-3p 0 0 1
chr17:16101428|16101610 hsa-miR-320b 0 0 1
chr17:16101428|16101610 hsa-miR-320c 0 0 1
chr17:16101428|16101610 hsa-miR-320d 0 0 1
chr17:16101428|16101610 hsa-miR-128 0 0 1
chr17:16101428|16101610 hsa-miR-658 1 0 0
chr17:16101428|16101610 hsa-miR-298 1 0 0
chr17:16101428|16101610 hsa-miR-933 1 0 0
chr17:16101428|16101610 hsa-miR-1268a 1 0 0
chr17:16101428|16101610 hsa-miR-711 1 1 0
chr17:16101428|16101610 hsa-miR-3138 1 0 0
chr17:16101428|16101610 hsa-miR-4291 0 1 0
chr17:16101428|16101610 hsa-miR-3911 1 1 0
chr17:16101428|16101610 hsa-miR-1268b 1 0 0
chr17:16101428|16101610 hsa-miR-4468 0 1 0
chr17:16101428|16101610 hsa-miR-4658 1 0 0
chr17:16101428|16101610 hsa-miR-4689 1 0 0
chr17:16101428|16101610 hsa-miR-4754 1 0 0
chr17:16101428|16101610 hsa-miR-5090 0 1 0
chr17:16101428|16101610 hsa-miR-5192 1 0 0
chr17:16101428|16101610 hsa-miR-6075 1 0 0
chr17:16101428|16101610 hsa-miR-8089 1 0 0
chr17:16101428|16101610 hsa-miR-510-5p 0 1 0
chr17:16101428|16101610 hsa-miR-4687-3p 1 0 0
chr17:16101428|16101610 hsa-miR-6804-5p 0 1 0
chr17:16101428|16101610 hsa-miR-3934-5p 1 0 0
chr17:16101428|16101610 hsa-miR-7114-5p 1 1 0
chr17:16101428|16101610 hsa-miR-7847-3p 1 0 0
chr17:16101428|16101610 hsa-miR-4709-3p 0 1 0
chr17:16101428|16101610 hsa-miR-4722-5p 1 1 0
chr17:16101428|16101610 hsa-miR-4711-5p 0 1 0
chr17:16101428|16101610 hsa-miR-6810-5p 1 0 0
chr17:16101428|16101610 hsa-miR-5008-5p 1 0 0
chr17:16101428|16101610 hsa-miR-615-5p 1 0 0
chr17:16101428|16101610 hsa-miR-1226-5p 1 0 0
chr17:16101428|16101610 hsa-miR-3691-5p 0 1 0
chr17:16101428|16101610 hsa-miR-4732-5p 1 0 0
chr17:16101428|16101610 hsa-miR-4758-3p 0 1 0
chr17:16101428|16101610 hsa-miR-6502-3p 0 1 0
chr17:16101428|16101610 hsa-miR-4652-3p 0 1 0
chr17:16101428|16101610 hsa-miR-1909-3p 1 1 0
chr17:16101428|16101610 hsa-miR-4632-5p 1 1 0
chr17:16101428|16101610 hsa-miR-4745-5p 1 0 0
chr17:16101428|16101610 hsa-miR-6735-5p 1 0 0
chr17:16101428|16101610 hsa-miR-675-5p 1 0 0
chr17:16101428|16101610 hsa-miR-3198 1 0 0
chr17:16101428|16101610 hsa-miR-6731-5p 1 0 0
chr17:16101428|16101610 hsa-miR-3619-5p 0 1 0
chr17:16101428|16101610 hsa-miR-372-3p 0 1 0
chr17:16101428|16101610 hsa-miR-3681-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr17:16101428|16101610
ORF Type ORF1
Protein Length 55
Nucleotide Length 165
Protein Sequence MVFWHPHFNVHRVSFGSGWGITNRTLFSTVLLLIYIHLLCCLSTDAVIHLGLHTF
Nucleotide Sequence ATGGTTTTCTGGCACCCTCACTTCAACGTCCACAGAGTCAGCTTTGGTAGCGGGTGGGGGATCACAAACAGAACCCTCTTCAGCACTGTGCTCCTGCTGATCTACATCCATCTGCTCTGCTGTCTCAGCACTGATGCTGTCATTCACCTGGGTCTCCACACTTTC
CircID chr17:16101428|16101610
ORF Type ORF2
Protein Length 42
Nucleotide Length 126
Protein Sequence MDVDQQEHSAEEGSVCDPPPATKADSVDVEVRVPENHASKVE
Nucleotide Sequence ATGGATGTAGATCAGCAGGAGCACAGTGCTGAAGAGGGTTCTGTTTGTGATCCCCCACCCGCTACCAAAGCTGACTCTGTGGACGTTGAAGTGAGGGTGCCAGAAAACCATGCATCTAAAGTTGAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab