CircRNA Information

General Information
circRNA Basic Information
CircID chr17:16417701|16417861
Strand +
CircType exon
Host Gene ENSG00000187688.13;
Algorism CIRI2;
Sequence CTGTTCCCTTTCGGTAGTTGAGGTTGACTCTTATCTGAGGGGCGAATTTCCGGTCCTCGCCCTGGAACTGTGACTCCATGGGAGGCAGCCCGCTCCCAAAATCCAGCTTTCCTCTGTCCGCCTCAGAGCCATCTTCTTGGCCTCCATCTAATGTCTCCAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:16417701|16417861 hsa-miR-27a-5p 0 0 1
chr17:16417701|16417861 hsa-miR-27a-3p 0 0 1
chr17:16417701|16417861 hsa-miR-27b-5p 0 0 1
chr17:16417701|16417861 hsa-miR-27b-3p 0 0 1
chr17:16417701|16417861 hsa-miR-320a-5p 0 0 1
chr17:16417701|16417861 hsa-miR-320a-3p 0 0 1
chr17:16417701|16417861 hsa-miR-611 0 0 1
chr17:16417701|16417861 hsa-miR-620 0 0 1
chr17:16417701|16417861 hsa-miR-650 1 0 1
chr17:16417701|16417861 hsa-miR-760 1 1 1
chr17:16417701|16417861 hsa-miR-920 0 0 1
chr17:16417701|16417861 hsa-miR-1287-5p 0 0 1
chr17:16417701|16417861 hsa-miR-1287-3p 0 0 1
chr17:16417701|16417861 hsa-miR-1290 0 1 1
chr17:16417701|16417861 hsa-miR-1270 1 0 1
chr17:16417701|16417861 hsa-miR-1289 0 0 1
chr17:16417701|16417861 hsa-miR-320b 1 1 1
chr17:16417701|16417861 hsa-miR-320c 1 1 1
chr17:16417701|16417861 hsa-miR-320d 0 1 1
chr17:16417701|16417861 hsa-miR-876-5p 0 0 1
chr17:16417701|16417861 hsa-miR-128 0 0 1
chr17:16417701|16417861 hsa-miR-637 1 0 0
chr17:16417701|16417861 hsa-miR-762 1 0 0
chr17:16417701|16417861 hsa-miR-1246 0 1 0
chr17:16417701|16417861 hsa-miR-3125 1 1 0
chr17:16417701|16417861 hsa-miR-3131 0 1 0
chr17:16417701|16417861 hsa-miR-3138 1 0 0
chr17:16417701|16417861 hsa-miR-320e 0 1 0
chr17:16417701|16417861 hsa-miR-3196 1 0 0
chr17:16417701|16417861 hsa-miR-4330 0 1 0
chr17:16417701|16417861 hsa-miR-3916 1 0 0
chr17:16417701|16417861 hsa-miR-3945 1 0 0
chr17:16417701|16417861 hsa-miR-4429 0 1 0
chr17:16417701|16417861 hsa-miR-4488 1 0 0
chr17:16417701|16417861 hsa-miR-4647 0 1 0
chr17:16417701|16417861 hsa-miR-4656 1 0 0
chr17:16417701|16417861 hsa-miR-4689 1 0 0
chr17:16417701|16417861 hsa-miR-4706 1 0 0
chr17:16417701|16417861 hsa-miR-4721 1 0 0
chr17:16417701|16417861 hsa-miR-4739 1 0 0
chr17:16417701|16417861 hsa-miR-6090 1 0 0
chr17:16417701|16417861 hsa-miR-6125 1 0 0
chr17:16417701|16417861 hsa-miR-378j 0 1 0
chr17:16417701|16417861 hsa-miR-6133 1 0 0
chr17:16417701|16417861 hsa-miR-8089 1 0 0
chr17:16417701|16417861 hsa-miR-12119 1 1 0
chr17:16417701|16417861 hsa-miR-12122 0 1 0
chr17:16417701|16417861 hsa-miR-4433b-3p 1 0 0
chr17:16417701|16417861 hsa-miR-6765-5p 1 1 0
chr17:16417701|16417861 hsa-miR-6836-3p 0 1 0
chr17:16417701|16417861 hsa-miR-6728-5p 1 0 0
chr17:16417701|16417861 hsa-miR-8071 1 0 0
chr17:16417701|16417861 hsa-miR-6089 1 0 0
chr17:16417701|16417861 hsa-miR-6880-5p 1 0 0
chr17:16417701|16417861 hsa-miR-7847-3p 1 1 0
chr17:16417701|16417861 hsa-miR-4695-5p 1 0 0
chr17:16417701|16417861 hsa-miR-6730-5p 1 0 0
chr17:16417701|16417861 hsa-miR-6762-3p 1 1 0
chr17:16417701|16417861 hsa-miR-8069 1 1 0
chr17:16417701|16417861 hsa-miR-6768-5p 1 0 0
chr17:16417701|16417861 hsa-miR-3180-3p 1 0 0
chr17:16417701|16417861 hsa-miR-6805-5p 1 0 0
chr17:16417701|16417861 hsa-miR-6514-5p 0 1 0
chr17:16417701|16417861 hsa-miR-5008-5p 1 0 0
chr17:16417701|16417861 hsa-miR-6882-3p 0 1 0
chr17:16417701|16417861 hsa-miR-1908-5p 0 1 0
chr17:16417701|16417861 hsa-miR-6847-5p 1 1 0
chr17:16417701|16417861 hsa-miR-6802-5p 1 0 0
chr17:16417701|16417861 hsa-miR-4800-5p 1 0 0
chr17:16417701|16417861 hsa-miR-584-3p 0 1 0
chr17:16417701|16417861 hsa-miR-6816-5p 1 0 0
chr17:16417701|16417861 hsa-miR-1343-5p 1 0 0
chr17:16417701|16417861 hsa-miR-3180 1 0 0
chr17:16417701|16417861 hsa-miR-6851-5p 1 0 0
chr17:16417701|16417861 hsa-miR-1249-5p 1 0 0
chr17:16417701|16417861 hsa-miR-328-5p 1 0 0
chr17:16417701|16417861 hsa-miR-4649-5p 1 1 0
chr17:16417701|16417861 hsa-miR-4685-5p 0 1 0
chr17:16417701|16417861 hsa-miR-6729-5p 0 1 0
chr17:16417701|16417861 hsa-miR-6794-5p 1 0 0
chr17:16417701|16417861 hsa-miR-6795-5p 1 0 0
chr17:16417701|16417861 hsa-miR-6887-5p 1 0 0
chr17:16417701|16417861 hsa-miR-4758-5p 1 0 0
chr17:16417701|16417861 hsa-miR-365a-5p 1 0 0
chr17:16417701|16417861 hsa-miR-30c-1-3p 1 0 0
chr17:16417701|16417861 hsa-miR-6856-5p 1 0 0
chr17:16417701|16417861 hsa-miR-6791-5p 1 0 0
chr17:16417701|16417861 hsa-miR-6837-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:16417701|16417861
ORF Type ORF1
Protein Length 28
Nucleotide Length 84
Protein Sequence MGGSPLPKSSFPLSASEPSSWPPSNVSN
Nucleotide Sequence ATGGGAGGCAGCCCGCTCCCAAAATCCAGCTTTCCTCTGTCCGCCTCAGAGCCATCTTCTTGGCCTCCATCTAATGTCTCCAAC
CircID chr17:16417701|16417861
ORF Type ORF2
Protein Length 53
Nucleotide Length 159
Protein Sequence LETLDGGQEDGSEADRGKLDFGSGLPPMESQFQGEDRKFAPQIRVNLNYRKGT
Nucleotide Sequence TTGGAGACATTAGATGGAGGCCAAGAAGATGGCTCTGAGGCGGACAGAGGAAAGCTGGATTTTGGGAGCGGGCTGCCTCCCATGGAGTCACAGTTCCAGGGCGAGGACCGGAAATTCGCCCCTCAGATAAGAGTCAACCTCAACTACCGAAAGGGAACA
CircID chr17:16417701|16417861
ORF Type ORF3
Protein Length 38
Nucleotide Length 117
Protein Sequence MEAKKMALRRTEESWILGAGCLPWSHSSRARTGNSPLR
Nucleotide Sequence ATGGAGGCCAAGAAGATGGCTCTGAGGCGGACAGAGGAAAGCTGGATTTTGGGAGCGGGCTGCCTCCCATGGAGTCACAGTTCCAGGGCGAGGACCGGAAATTCGCCCCTCAGATAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab