CircRNA Information

General Information
circRNA Basic Information
CircID chr17:17183054|17183217
Strand +
CircType exon
Host Gene ENSG00000278864.1;
Algorism CIRI2;
Sequence CTCACTGGTCCAGGTGAGCCTCACCTCAAGCAGTTGTCACAGCTTGATAATTGTGTGTTTCTGAGAGGGTTTCTTTGGAAGCCTGCCACAGAGAGTGGCTGGGGGAATGGGGGGAAAATCCATCTCCCATTCTGAGCCCAGATGTACCTCAACACCCATGCCTG
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:17183054|17183217 hsa-let-7b-5p 0 0 1
chr17:17183054|17183217 hsa-let-7b-3p 0 0 1
chr17:17183054|17183217 hsa-let-7c-5p 0 0 1
chr17:17183054|17183217 hsa-let-7c-3p 0 0 1
chr17:17183054|17183217 hsa-let-7d-5p 0 0 1
chr17:17183054|17183217 hsa-let-7d-3p 0 0 1
chr17:17183054|17183217 hsa-let-7e-5p 0 0 1
chr17:17183054|17183217 hsa-let-7e-3p 0 0 1
chr17:17183054|17183217 hsa-miR-98-5p 0 0 1
chr17:17183054|17183217 hsa-miR-98-3p 0 0 1
chr17:17183054|17183217 hsa-let-7g-5p 0 0 1
chr17:17183054|17183217 hsa-let-7g-3p 0 0 1
chr17:17183054|17183217 hsa-let-7i-5p 0 0 1
chr17:17183054|17183217 hsa-let-7i-3p 0 0 1
chr17:17183054|17183217 hsa-miR-202-5p 0 0 1
chr17:17183054|17183217 hsa-miR-202-3p 0 0 1
chr17:17183054|17183217 hsa-miR-609 0 0 1
chr17:17183054|17183217 hsa-miR-612 0 0 1
chr17:17183054|17183217 hsa-miR-619-5p 0 0 1
chr17:17183054|17183217 hsa-miR-619-3p 0 0 1
chr17:17183054|17183217 hsa-miR-1290 0 0 1
chr17:17183054|17183217 hsa-miR-1246 0 0 1
chr17:17183054|17183217 hsa-miR-485-5p 0 0 1
chr17:17183054|17183217 hsa-miR-361-3p 0 0 1
chr17:17183054|17183217 hsa-miR-1207-5p 0 0 1
chr17:17183054|17183217 hsa-miR-876-5p 0 0 1
chr17:17183054|17183217 hsa-miR-542-3p 0 0 1
chr17:17183054|17183217 hsa-miR-1308 0 0 1
chr17:17183054|17183217 hsa-let-7a 0 0 1
chr17:17183054|17183217 hsa-let-7f 0 0 1
chr17:17183054|17183217 hsa-miR-1285 0 0 1
chr17:17183054|17183217 hsa-miR-24 0 0 1
chr17:17183054|17183217 hsa-miR-549 0 0 1
chr17:17183054|17183217 hsa-miR-663a 1 0 0
chr17:17183054|17183217 hsa-miR-4316 0 1 0
chr17:17183054|17183217 hsa-miR-378g 0 1 0
chr17:17183054|17183217 hsa-miR-4437 0 1 0
chr17:17183054|17183217 hsa-miR-4651 1 0 0
chr17:17183054|17183217 hsa-miR-4674 0 1 0
chr17:17183054|17183217 hsa-miR-12127 1 0 0
chr17:17183054|17183217 hsa-miR-6765-5p 1 0 0
chr17:17183054|17183217 hsa-miR-125a-3p 1 0 0
chr17:17183054|17183217 hsa-miR-3622a-5p 1 0 0
chr17:17183054|17183217 hsa-miR-6757-5p 1 0 0
chr17:17183054|17183217 hsa-miR-3622b-5p 1 1 0
chr17:17183054|17183217 hsa-miR-3151-5p 1 0 0
chr17:17183054|17183217 hsa-miR-6782-5p 1 0 0
chr17:17183054|17183217 hsa-miR-30b-3p 0 1 0
chr17:17183054|17183217 hsa-miR-5088-5p 1 1 0
chr17:17183054|17183217 hsa-miR-30c-2-3p 0 1 0
chr17:17183054|17183217 hsa-miR-3679-3p 0 1 0
chr17:17183054|17183217 hsa-miR-7854-3p 0 1 0
chr17:17183054|17183217 hsa-miR-4446-5p 0 1 0
chr17:17183054|17183217 hsa-miR-6777-3p 0 1 0
chr17:17183054|17183217 hsa-miR-1298-3p 0 1 0
chr17:17183054|17183217 hsa-miR-6839-3p 0 1 0
chr17:17183054|17183217 hsa-miR-4763-3p 1 0 0
chr17:17183054|17183217 hsa-miR-6752-5p 1 0 0
chr17:17183054|17183217 hsa-miR-6722-3p 1 0 0
chr17:17183054|17183217 hsa-miR-10396b-5p 1 0 0
chr17:17183054|17183217 hsa-miR-30c-1-3p 0 1 0
chr17:17183054|17183217 hsa-miR-6736-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:17183054|17183217
ORF Type ORF1
Protein Length 33
Nucleotide Length 102
Protein Sequence MSQLDNCVFLRGFLWKPATESGWGNGGKIHLPF
Nucleotide Sequence TTGTCACAGCTTGATAATTGTGTGTTTCTGAGAGGGTTTCTTTGGAAGCCTGCCACAGAGAGTGGCTGGGGGAATGGGGGGAAAATCCATCTCCCATTCTGA
CircID chr17:17183054|17183217
ORF Type ORF2
Protein Length 27
Nucleotide Length 81
Protein Sequence MPQRVAGGMGGKSISHSEPRCTSTPMP
Nucleotide Sequence CTGCCACAGAGAGTGGCTGGGGGAATGGGGGGAAAATCCATCTCCCATTCTGAGCCCAGATGTACCTCAACACCCATGCCT
CircID chr17:17183054|17183217
ORF Type ORF3
Protein Length 38
Nucleotide Length 114
Protein Sequence MCVSERVSLEACHREWLGEWGENPSPILSPDVPQHPCL
Nucleotide Sequence TTGTGTGTTTCTGAGAGGGTTTCTTTGGAAGCCTGCCACAGAGAGTGGCTGGGGGAATGGGGGGAAAATCCATCTCCCATTCTGAGCCCAGATGTACCTCAACACCCATGCCTG
CircID chr17:17183054|17183217
ORF Type ORF4
Protein Length 43
Nucleotide Length 132
Protein Sequence MRYIWAQNGRWIFPPFPQPLSVAGFQRNPLRNTQLSSCDNCLR
Nucleotide Sequence TTGAGGTACATCTGGGCTCAGAATGGGAGATGGATTTTCCCCCCATTCCCCCAGCCACTCTCTGTGGCAGGCTTCCAAAGAAACCCTCTCAGAAACACACAATTATCAAGCTGTGACAACTGCTTGAGGTGA
CircID chr17:17183054|17183217
ORF Type ORF5
Protein Length 34
Nucleotide Length 105
Protein Sequence MGDGFSPHSPSHSLWQASKETLSETHNYQAVTTA
Nucleotide Sequence ATGGGAGATGGATTTTCCCCCCATTCCCCCAGCCACTCTCTGTGGCAGGCTTCCAAAGAAACCCTCTCAGAAACACACAATTATCAAGCTGTGACAACTGCTTGA
CircID chr17:17183054|17183217
ORF Type ORF6
Protein Length 40
Nucleotide Length 123
Protein Sequence MGVEVHLGSEWEMDFPPIPPATLCGRLPKKPSQKHTIIKL
Nucleotide Sequence ATGGGTGTTGAGGTACATCTGGGCTCAGAATGGGAGATGGATTTTCCCCCCATTCCCCCAGCCACTCTCTGTGGCAGGCTTCCAAAGAAACCCTCTCAGAAACACACAATTATCAAGCTGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab