CircRNA Information

General Information
circRNA Basic Information
CircID chr17:17796882|17797079
Strand +
CircType exon
Host Gene ENSG00000108557.16;
Algorism CIRI2;
Sequence CCCCACTGGGCTGCCCCCAGCACCCTTGAGCCCACGGTCTTTGTCGGAAAGGGATGGGCTCAGAGGATTACCAGGAGAGGCCCCTGGCGCTTTACATGCGAACTTCTTGAGGCTGGGCGAGGTGATCTTCTGCACGATGGCTTCCAGCTTCAGGCCCCGGCCCTTCCGGGGTGGCAGCACCTTGGTCTTCATGGCCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:17796882|17797079 hsa-miR-18a-5p 0 0 1
chr17:17796882|17797079 hsa-miR-18a-3p 0 0 1
chr17:17796882|17797079 hsa-miR-204-5p 0 0 1
chr17:17796882|17797079 hsa-miR-204-3p 0 0 1
chr17:17796882|17797079 hsa-miR-211-5p 0 0 1
chr17:17796882|17797079 hsa-miR-211-3p 0 0 1
chr17:17796882|17797079 hsa-miR-18b-5p 0 0 1
chr17:17796882|17797079 hsa-miR-18b-3p 0 0 1
chr17:17796882|17797079 hsa-miR-518f-5p 0 0 1
chr17:17796882|17797079 hsa-miR-518f-3p 0 0 1
chr17:17796882|17797079 hsa-miR-518b 0 0 1
chr17:17796882|17797079 hsa-miR-518c-5p 0 0 1
chr17:17796882|17797079 hsa-miR-518c-3p 0 0 1
chr17:17796882|17797079 hsa-miR-517-5p 0 0 1
chr17:17796882|17797079 hsa-miR-517a-3p 0 0 1
chr17:17796882|17797079 hsa-miR-517b-3p 0 0 1
chr17:17796882|17797079 hsa-miR-517c-3p 0 0 1
chr17:17796882|17797079 hsa-miR-637 0 0 1
chr17:17796882|17797079 hsa-miR-298 0 0 1
chr17:17796882|17797079 hsa-miR-127-5p 0 0 1
chr17:17796882|17797079 hsa-miR-671-5p 0 0 1
chr17:17796882|17797079 hsa-miR-1225-3p 0 0 1
chr17:17796882|17797079 hsa-miR-486-3p 0 1 1
chr17:17796882|17797079 hsa-miR-188-5p 0 1 1
chr17:17796882|17797079 hsa-miR-518a-3p 0 1 1
chr17:17796882|17797079 hsa-miR-518d-3p 0 0 1
chr17:17796882|17797079 hsa-miR-1233 0 0 1
chr17:17796882|17797079 hsa-miR-500 0 0 1
chr17:17796882|17797079 hsa-miR-326 0 1 0
chr17:17796882|17797079 hsa-miR-608 1 0 0
chr17:17796882|17797079 hsa-miR-762 1 1 0
chr17:17796882|17797079 hsa-miR-2861 0 1 0
chr17:17796882|17797079 hsa-miR-3921 0 1 0
chr17:17796882|17797079 hsa-miR-4437 0 1 0
chr17:17796882|17797079 hsa-miR-3135b 0 1 0
chr17:17796882|17797079 hsa-miR-4674 0 1 0
chr17:17796882|17797079 hsa-miR-4741 1 0 0
chr17:17796882|17797079 hsa-miR-5787 1 0 0
chr17:17796882|17797079 hsa-miR-4731-5p 0 1 0
chr17:17796882|17797079 hsa-miR-6741-5p 1 1 0
chr17:17796882|17797079 hsa-miR-6727-5p 1 1 0
chr17:17796882|17797079 hsa-miR-3187-3p 1 0 0
chr17:17796882|17797079 hsa-miR-6874-5p 0 1 0
chr17:17796882|17797079 hsa-miR-6784-5p 0 1 0
chr17:17796882|17797079 hsa-miR-4640-5p 1 0 0
chr17:17796882|17797079 hsa-miR-6749-5p 0 1 0
chr17:17796882|17797079 hsa-miR-6780a-3p 0 1 0
chr17:17796882|17797079 hsa-miR-149-3p 0 1 0
chr17:17796882|17797079 hsa-miR-6781-5p 0 1 0
chr17:17796882|17797079 hsa-miR-1250-5p 1 0 0
chr17:17796882|17797079 hsa-miR-4761-5p 0 1 0
chr17:17796882|17797079 hsa-miR-6508-3p 0 1 0
chr17:17796882|17797079 hsa-miR-548ao-3p 0 1 0
chr17:17796882|17797079 hsa-miR-1237-5p 1 0 0
chr17:17796882|17797079 hsa-miR-4726-5p 1 0 0
chr17:17796882|17797079 hsa-miR-6848-5p 1 0 0
chr17:17796882|17797079 hsa-miR-939-5p 1 0 0
chr17:17796882|17797079 hsa-miR-1199-5p 0 1 0
chr17:17796882|17797079 hsa-miR-6762-5p 0 1 0
chr17:17796882|17797079 hsa-miR-6751-3p 0 1 0
chr17:17796882|17797079 hsa-miR-330-5p 0 1 0
chr17:17796882|17797079 hsa-miR-6744-3p 0 1 0
chr17:17796882|17797079 hsa-miR-4690-3p 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:17796882|17797079
ORF Type ORF1
Protein Length 62
Nucleotide Length 186
Protein Sequence MPPAPLSPRSLSERDGLRGLPGEAPGALHANFLRLGEVIFCTMASSFRPRPFRGGSTLVFMA
Nucleotide Sequence CTGCCCCCAGCACCCTTGAGCCCACGGTCTTTGTCGGAAAGGGATGGGCTCAGAGGATTACCAGGAGAGGCCCCTGGCGCTTTACATGCGAACTTCTTGAGGCTGGGCGAGGTGATCTTCTGCACGATGGCTTCCAGCTTCAGGCCCCGGCCCTTCCGGGGTGGCAGCACCTTGGTCTTCATGGCC
CircID chr17:17796882|17797079
ORF Type ORF2
Protein Length 64
Nucleotide Length 192
Protein Sequence MKTKVLPPRKGRGLKLEAIVQKITSPSLKKFACKAPGASPGNPLSPSLSDKDRGLKGAGGSPVG
Nucleotide Sequence ATGAAGACCAAGGTGCTGCCACCCCGGAAGGGCCGGGGCCTGAAGCTGGAAGCCATCGTGCAGAAGATCACCTCGCCCAGCCTCAAGAAGTTCGCATGTAAAGCGCCAGGGGCCTCTCCTGGTAATCCTCTGAGCCCATCCCTTTCCGACAAAGACCGTGGGCTCAAGGGTGCTGGGGGCAGCCCAGTGGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab