CircRNA Information

General Information
circRNA Basic Information
CircID chr17:17813368|17813640
Strand -
CircType exon
Host Gene ENSG00000072310.15;
Algorism CIRI2;
Sequence CTCCTTTGCCACCGGGGCCTGCCCGCCGCCTCAGACTGCGGTCGAGGAGCTGGTGTGTCCGTGTGGGGCTGGCCCCCGCCATCAGCCGGGCCGTGGCCTCATGTAGGAACACCTGGGGGCCAGGAGAGTGGAGGCTCAGGGCTCTCCATCTCCACCACTGCCTGACTCCCCGTCTTGAGGACAGGGCCATCGGGCACTCACCCTCCGCATGGCGGGCCGGAAGCTCTGTGCCAGCCGCCTCAGGCTGCTCAGGTCCCGTTGGAAGCCACGCAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:17813368|17813640 hsa-miR-34a-5p 0 0 1
chr17:17813368|17813640 hsa-miR-34a-3p 0 0 1
chr17:17813368|17813640 hsa-miR-185-5p 0 0 1
chr17:17813368|17813640 hsa-miR-185-3p 0 0 1
chr17:17813368|17813640 hsa-miR-328-5p 0 0 1
chr17:17813368|17813640 hsa-miR-328-3p 0 0 1
chr17:17813368|17813640 hsa-miR-449a 0 0 1
chr17:17813368|17813640 hsa-miR-492 0 0 1
chr17:17813368|17813640 hsa-miR-620 0 0 1
chr17:17813368|17813640 hsa-miR-622 0 1 1
chr17:17813368|17813640 hsa-miR-449b-5p 0 0 1
chr17:17813368|17813640 hsa-miR-449b-3p 0 0 1
chr17:17813368|17813640 hsa-miR-658 1 1 1
chr17:17813368|17813640 hsa-miR-1180-5p 0 0 1
chr17:17813368|17813640 hsa-miR-1180-3p 0 0 1
chr17:17813368|17813640 hsa-miR-1226-5p 0 0 1
chr17:17813368|17813640 hsa-miR-1226-3p 0 0 1
chr17:17813368|17813640 hsa-miR-1291 1 1 1
chr17:17813368|17813640 hsa-miR-1270 0 1 1
chr17:17813368|17813640 hsa-miR-146b-3p 0 0 1
chr17:17813368|17813640 hsa-miR-339-5p 0 1 1
chr17:17813368|17813640 hsa-miR-361-3p 0 1 1
chr17:17813368|17813640 hsa-miR-483-5p 0 1 1
chr17:17813368|17813640 hsa-miR-125a-5p 0 1 1
chr17:17813368|17813640 hsa-miR-34c-5p 0 0 1
chr17:17813368|17813640 hsa-miR-362-3p 0 0 1
chr17:17813368|17813640 hsa-miR-1233 0 0 1
chr17:17813368|17813640 hsa-miR-125b 0 0 1
chr17:17813368|17813640 hsa-miR-329 0 0 1
chr17:17813368|17813640 hsa-miR-663 0 0 1
chr17:17813368|17813640 hsa-miR-612 1 0 0
chr17:17813368|17813640 hsa-miR-661 1 0 0
chr17:17813368|17813640 hsa-miR-663a 1 0 0
chr17:17813368|17813640 hsa-miR-663b 1 0 0
chr17:17813368|17813640 hsa-miR-1538 0 1 0
chr17:17813368|17813640 hsa-miR-718 1 0 0
chr17:17813368|17813640 hsa-miR-2861 1 0 0
chr17:17813368|17813640 hsa-miR-3154 1 0 0
chr17:17813368|17813640 hsa-miR-4323 0 1 0
chr17:17813368|17813640 hsa-miR-4268 0 1 0
chr17:17813368|17813640 hsa-miR-4270 1 0 0
chr17:17813368|17813640 hsa-miR-3615 1 0 0
chr17:17813368|17813640 hsa-miR-3649 0 1 0
chr17:17813368|17813640 hsa-miR-3911 1 0 0
chr17:17813368|17813640 hsa-miR-3937 0 1 0
chr17:17813368|17813640 hsa-miR-4467 0 1 0
chr17:17813368|17813640 hsa-miR-4488 1 0 0
chr17:17813368|17813640 hsa-miR-4514 0 1 0
chr17:17813368|17813640 hsa-miR-3960 0 1 0
chr17:17813368|17813640 hsa-miR-4656 0 1 0
chr17:17813368|17813640 hsa-miR-4692 0 1 0
chr17:17813368|17813640 hsa-miR-4706 1 0 0
chr17:17813368|17813640 hsa-miR-5787 1 0 0
chr17:17813368|17813640 hsa-miR-7976 0 1 0
chr17:17813368|17813640 hsa-miR-8057 1 1 0
chr17:17813368|17813640 hsa-miR-8072 1 1 0
chr17:17813368|17813640 hsa-miR-8075 0 1 0
chr17:17813368|17813640 hsa-miR-12119 0 1 0
chr17:17813368|17813640 hsa-miR-4665-3p 1 0 0
chr17:17813368|17813640 hsa-miR-6765-5p 1 1 0
chr17:17813368|17813640 hsa-miR-1233-3p 0 1 0
chr17:17813368|17813640 hsa-miR-7851-3p 0 1 0
chr17:17813368|17813640 hsa-miR-3934-5p 0 1 0
chr17:17813368|17813640 hsa-miR-6089 1 0 0
chr17:17813368|17813640 hsa-miR-6880-5p 0 1 0
chr17:17813368|17813640 hsa-miR-3180-3p 1 0 0
chr17:17813368|17813640 hsa-miR-3194-5p 0 1 0
chr17:17813368|17813640 hsa-miR-6821-5p 1 0 0
chr17:17813368|17813640 hsa-miR-939-3p 0 1 0
chr17:17813368|17813640 hsa-miR-1909-5p 0 1 0
chr17:17813368|17813640 hsa-miR-4707-3p 0 1 0
chr17:17813368|17813640 hsa-miR-6736-3p 0 1 0
chr17:17813368|17813640 hsa-miR-3162-5p 1 0 0
chr17:17813368|17813640 hsa-miR-2115-5p 0 1 0
chr17:17813368|17813640 hsa-miR-4758-3p 0 1 0
chr17:17813368|17813640 hsa-miR-6501-3p 1 0 0
chr17:17813368|17813640 hsa-miR-6777-3p 1 1 0
chr17:17813368|17813640 hsa-miR-4717-5p 0 1 0
chr17:17813368|17813640 hsa-miR-6779-3p 0 1 0
chr17:17813368|17813640 hsa-miR-4520-5p 0 1 0
chr17:17813368|17813640 hsa-miR-337-3p 0 1 0
chr17:17813368|17813640 hsa-miR-10400-5p 1 1 0
chr17:17813368|17813640 hsa-miR-4763-3p 1 0 0
chr17:17813368|17813640 hsa-miR-6787-5p 1 1 0
chr17:17813368|17813640 hsa-miR-6812-5p 1 0 0
chr17:17813368|17813640 hsa-miR-6816-5p 1 1 0
chr17:17813368|17813640 hsa-miR-6865-5p 0 1 0
chr17:17813368|17813640 hsa-miR-6775-5p 1 0 0
chr17:17813368|17813640 hsa-miR-1343-5p 1 0 0
chr17:17813368|17813640 hsa-miR-3180 1 0 0
chr17:17813368|17813640 hsa-miR-6756-5p 1 0 0
chr17:17813368|17813640 hsa-miR-6769a-5p 1 0 0
chr17:17813368|17813640 hsa-miR-6763-5p 1 0 0
chr17:17813368|17813640 hsa-miR-5189-5p 1 1 0
chr17:17813368|17813640 hsa-miR-6836-5p 1 0 0
chr17:17813368|17813640 hsa-miR-10396b-5p 1 1 0
chr17:17813368|17813640 hsa-miR-4632-5p 1 0 0
chr17:17813368|17813640 hsa-miR-4726-5p 1 0 0
chr17:17813368|17813640 hsa-miR-4745-3p 0 1 0
chr17:17813368|17813640 hsa-miR-6777-5p 1 1 0
chr17:17813368|17813640 hsa-miR-6887-5p 1 0 0
chr17:17813368|17813640 hsa-miR-6889-5p 1 1 0
chr17:17813368|17813640 hsa-miR-3187-5p 1 1 0
chr17:17813368|17813640 hsa-miR-939-5p 1 0 0
chr17:17813368|17813640 hsa-miR-6877-3p 0 1 0
chr17:17813368|17813640 hsa-miR-6724-5p 1 0 0
chr17:17813368|17813640 hsa-miR-6762-5p 0 1 0
chr17:17813368|17813640 hsa-miR-6775-3p 1 1 0
chr17:17813368|17813640 hsa-miR-10392-3p 1 0 0
chr17:17813368|17813640 hsa-miR-6751-3p 0 1 0
chr17:17813368|17813640 hsa-miR-6823-3p 0 1 0
chr17:17813368|17813640 hsa-miR-7156-5p 0 1 0
chr17:17813368|17813640 hsa-miR-329-3p 0 1 0
chr17:17813368|17813640 hsa-miR-125b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:17813368|17813640
ORF Type ORF1
Protein Length 48
Nucleotide Length 147
Protein Sequence MPAASDCGRGAGVSVWGWPPPSAGPWPHVGTPGGQESGGSGLSISTTA
Nucleotide Sequence CTGCCCGCCGCCTCAGACTGCGGTCGAGGAGCTGGTGTGTCCGTGTGGGGCTGGCCCCCGCCATCAGCCGGGCCGTGGCCTCATGTAGGAACACCTGGGGGCCAGGAGAGTGGAGGCTCAGGGCTCTCCATCTCCACCACTGCCTGA
CircID chr17:17813368|17813640
ORF Type ORF2
Protein Length 33
Nucleotide Length 99
Protein Sequence MRTGPSGTHPPHGGPEALCQPPQAAQVPLEATQ
Nucleotide Sequence TTGAGGACAGGGCCATCGGGCACTCACCCTCCGCATGGCGGGCCGGAAGCTCTGTGCCAGCCGCCTCAGGCTGCTCAGGTCCCGTTGGAAGCCACGCAG
CircID chr17:17813368|17813640
ORF Type ORF3
Protein Length 89
Nucleotide Length 267
Protein Sequence MPPGPARRLRLRSRSWCVRVGLAPAISRAVASCRNTWGPGEWRLRALHLHHCLTPRLEDRAIGHSPSAWRAGSSVPAASGCSGPVGSHA
Nucleotide Sequence TTGCCACCGGGGCCTGCCCGCCGCCTCAGACTGCGGTCGAGGAGCTGGTGTGTCCGTGTGGGGCTGGCCCCCGCCATCAGCCGGGCCGTGGCCTCATGTAGGAACACCTGGGGGCCAGGAGAGTGGAGGCTCAGGGCTCTCCATCTCCACCACTGCCTGACTCCCCGTCTTGAGGACAGGGCCATCGGGCACTCACCCTCCGCATGGCGGGCCGGAAGCTCTGTGCCAGCCGCCTCAGGCTGCTCAGGTCCCGTTGGAAGCCACGCA
CircID chr17:17813368|17813640
ORF Type ORF4
Protein Length 45
Nucleotide Length 138
Protein Sequence LRGFQRDLSSLRRLAQSFRPAMRRVSARWPCPQDGESGSGGDGEP
Nucleotide Sequence CTGCGTGGCTTCCAACGGGACCTGAGCAGCCTGAGGCGGCTGGCACAGAGCTTCCGGCCCGCCATGCGGAGGGTGAGTGCCCGATGGCCCTGTCCTCAAGACGGGGAGTCAGGCAGTGGTGGAGATGGAGAGCCCTGA
CircID chr17:17813368|17813640
ORF Type ORF5
Protein Length 63
Nucleotide Length 189
Protein Sequence MALSSRRGVRQWWRWRALSLHSPGPQVFLHEATARLMAGASPTRTHQLLDRSLRRRAGPGGKG
Nucleotide Sequence ATGGCCCTGTCCTCAAGACGGGGAGTCAGGCAGTGGTGGAGATGGAGAGCCCTGAGCCTCCACTCTCCTGGCCCCCAGGTGTTCCTACATGAGGCCACGGCCCGGCTGATGGCGGGGGCCAGCCCCACACGGACACACCAGCTCCTCGACCGCAGTCTGAGGCGGCGGGCAGGCCCCGGTGGCAAAGGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab