CircRNA Information

General Information
circRNA Basic Information
CircID chr17:18245142|18245399
Strand +
CircType exon
Host Gene ENSG00000177731.14;
Algorism CIRI2;
Sequence CCAGACTAGCCAGGTGGAGATCAAGCTGAGCCTGAAGGCCTGCCAGGTAATCTGGGTGGAGGGAGGGCCGAGGTGGGCCTGTGGGCAGGGCAGGGTCATCACCCAAGGCTCGCTGTCCCCTTGCCAGGTATATATCCAGCACATGCGGTCCAAGGAACATGAGCGGCCGCGCCGGCTGCGCCTGGTCCGCAAGGGCAATGAGCAGCACGCCTTTACCCGCTGCTTCCACGCCTGGAGCGCCTTCTGCAAGGCCCTGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:18245142|18245399 hsa-miR-31-5p 0 0 1
chr17:18245142|18245399 hsa-miR-31-3p 0 0 1
chr17:18245142|18245399 hsa-miR-484 0 0 1
chr17:18245142|18245399 hsa-miR-503-5p 0 0 1
chr17:18245142|18245399 hsa-miR-503-3p 0 0 1
chr17:18245142|18245399 hsa-miR-504-5p 0 0 1
chr17:18245142|18245399 hsa-miR-504-3p 0 0 1
chr17:18245142|18245399 hsa-miR-619-5p 0 0 1
chr17:18245142|18245399 hsa-miR-619-3p 0 0 1
chr17:18245142|18245399 hsa-miR-298 0 0 1
chr17:18245142|18245399 hsa-miR-874-5p 0 0 1
chr17:18245142|18245399 hsa-miR-874-3p 0 0 1
chr17:18245142|18245399 hsa-miR-938 0 0 1
chr17:18245142|18245399 hsa-miR-1287-5p 0 0 1
chr17:18245142|18245399 hsa-miR-1287-3p 0 0 1
chr17:18245142|18245399 hsa-miR-1262 0 0 1
chr17:18245142|18245399 hsa-miR-671-5p 0 0 1
chr17:18245142|18245399 hsa-miR-146b-3p 0 0 1
chr17:18245142|18245399 hsa-miR-1224-3p 0 0 1
chr17:18245142|18245399 hsa-miR-875-5p 0 0 1
chr17:18245142|18245399 hsa-miR-502-5p 0 0 1
chr17:18245142|18245399 hsa-miR-767-3p 0 0 1
chr17:18245142|18245399 hsa-miR-1207-5p 0 0 1
chr17:18245142|18245399 hsa-miR-524-3p 0 0 1
chr17:18245142|18245399 hsa-miR-525-3p 0 0 1
chr17:18245142|18245399 hsa-miR-24 0 0 1
chr17:18245142|18245399 hsa-miR-638 1 0 0
chr17:18245142|18245399 hsa-miR-650 1 0 0
chr17:18245142|18245399 hsa-miR-663a 1 0 0
chr17:18245142|18245399 hsa-miR-1268a 1 0 0
chr17:18245142|18245399 hsa-miR-1471 1 0 0
chr17:18245142|18245399 hsa-miR-2861 1 0 0
chr17:18245142|18245399 hsa-miR-4290 1 0 0
chr17:18245142|18245399 hsa-miR-3621 1 0 0
chr17:18245142|18245399 hsa-miR-3907 1 0 0
chr17:18245142|18245399 hsa-miR-3937 1 0 0
chr17:18245142|18245399 hsa-miR-1268b 1 0 0
chr17:18245142|18245399 hsa-miR-4479 1 0 0
chr17:18245142|18245399 hsa-miR-3960 1 0 0
chr17:18245142|18245399 hsa-miR-4767 1 0 0
chr17:18245142|18245399 hsa-miR-6081 1 0 0
chr17:18245142|18245399 hsa-miR-6125 1 0 0
chr17:18245142|18245399 hsa-miR-8072 1 0 0
chr17:18245142|18245399 hsa-miR-6749-3p 1 0 0
chr17:18245142|18245399 hsa-miR-4747-3p 1 0 0
chr17:18245142|18245399 hsa-miR-4433a-3p 1 0 0
chr17:18245142|18245399 hsa-miR-6892-3p 1 0 0
chr17:18245142|18245399 hsa-miR-3934-5p 1 0 0
chr17:18245142|18245399 hsa-miR-4695-5p 1 0 0
chr17:18245142|18245399 hsa-miR-4722-5p 1 0 0
chr17:18245142|18245399 hsa-miR-6798-5p 1 0 0
chr17:18245142|18245399 hsa-miR-6782-5p 1 0 0
chr17:18245142|18245399 hsa-miR-6765-3p 1 0 0
chr17:18245142|18245399 hsa-miR-6858-3p 1 0 0
chr17:18245142|18245399 hsa-miR-4707-3p 1 0 0
chr17:18245142|18245399 hsa-miR-2277-3p 1 0 0
chr17:18245142|18245399 hsa-miR-4783-3p 1 0 0
chr17:18245142|18245399 hsa-miR-4640-5p 1 0 0
chr17:18245142|18245399 hsa-miR-885-3p 1 0 0
chr17:18245142|18245399 hsa-miR-4743-5p 1 0 0
chr17:18245142|18245399 hsa-miR-4787-5p 1 0 0
chr17:18245142|18245399 hsa-miR-4687-5p 1 0 0
chr17:18245142|18245399 hsa-miR-6813-3p 1 0 0
chr17:18245142|18245399 hsa-miR-6741-3p 1 0 0
chr17:18245142|18245399 hsa-miR-6886-3p 1 0 0
chr17:18245142|18245399 hsa-miR-4749-3p 1 0 0
chr17:18245142|18245399 hsa-miR-328-3p 1 0 0
chr17:18245142|18245399 hsa-miR-6851-3p 1 0 0
chr17:18245142|18245399 hsa-miR-1249-3p 1 0 0
chr17:18245142|18245399 hsa-miR-6775-5p 1 0 0
chr17:18245142|18245399 hsa-miR-1343-5p 1 0 0
chr17:18245142|18245399 hsa-miR-6743-5p 1 0 0
chr17:18245142|18245399 hsa-miR-6722-3p 1 0 0
chr17:18245142|18245399 hsa-miR-5196-5p 1 0 0
chr17:18245142|18245399 hsa-miR-6836-5p 1 0 0
chr17:18245142|18245399 hsa-miR-4632-5p 1 0 0
chr17:18245142|18245399 hsa-miR-4685-5p 1 0 0
chr17:18245142|18245399 hsa-miR-6729-5p 1 0 0
chr17:18245142|18245399 hsa-miR-6750-5p 1 0 0
chr17:18245142|18245399 hsa-miR-6756-3p 1 0 0
chr17:18245142|18245399 hsa-miR-6775-3p 1 0 0
chr17:18245142|18245399 hsa-miR-10392-3p 1 0 0
chr17:18245142|18245399 hsa-miR-1301-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:18245142|18245399
ORF Type ORF1
Protein Length 40
Nucleotide Length 123
Protein Sequence MPGNLGGGRAEVGLWAGQGHHPRLAVPLPGIYPAHAVQGT
Nucleotide Sequence CTGCCAGGTAATCTGGGTGGAGGGAGGGCCGAGGTGGGCCTGTGGGCAGGGCAGGGTCATCACCCAAGGCTCGCTGTCCCCTTGCCAGGTATATATCCAGCACATGCGGTCCAAGGAACATGA
CircID chr17:18245142|18245399
ORF Type ORF2
Protein Length 77
Nucleotide Length 231
Protein Sequence MSLKACQVIWVEGGPRWACGQGRVITQGSLSPCQVYIQHMRSKEHERPRRLRLVRKGNEQHAFTRCFHAWSAFCKAL
Nucleotide Sequence CTGAGCCTGAAGGCCTGCCAGGTAATCTGGGTGGAGGGAGGGCCGAGGTGGGCCTGTGGGCAGGGCAGGGTCATCACCCAAGGCTCGCTGTCCCCTTGCCAGGTATATATCCAGCACATGCGGTCCAAGGAACATGAGCGGCCGCGCCGGCTGCGCCTGGTCCGCAAGGGCAATGAGCAGCACGCCTTTACCCGCTGCTTCCACGCCTGGAGCGCCTTCTGCAAGGCCCTG
CircID chr17:18245142|18245399
ORF Type ORF3
Protein Length 33
Nucleotide Length 99
Protein Sequence MSGRAGCAWSARAMSSTPLPAASTPGAPSARPW
Nucleotide Sequence ATGAGCGGCCGCGCCGGCTGCGCCTGGTCCGCAAGGGCAATGAGCAGCACGCCTTTACCCGCTGCTTCCACGCCTGGAGCGCCTTCTGCAAGGCCCTGG
CircID chr17:18245142|18245399
ORF Type ORF4
Protein Length 83
Nucleotide Length 249
Protein Sequence MQKALQAWKQRVKACCSLPLRTRRSRRGRSCSLDRMCWIYTWQGDSEPWVMTLPCPQAHLGPPSTQITWQAFRLSLISTWLVW
Nucleotide Sequence TTGCAGAAGGCGCTCCAGGCGTGGAAGCAGCGGGTAAAGGCGTGCTGCTCATTGCCCTTGCGGACCAGGCGCAGCCGGCGCGGCCGCTCATGTTCCTTGGACCGCATGTGCTGGATATATACCTGGCAAGGGGACAGCGAGCCTTGGGTGATGACCCTGCCCTGCCCACAGGCCCACCTCGGCCCTCCCTCCACCCAGATTACCTGGCAGGCCTTCAGGCTCAGCTTGATCTCCACCTGGCTAGTCTGG
CircID chr17:18245142|18245399
ORF Type ORF5
Protein Length 68
Nucleotide Length 204
Protein Sequence MLIALADQAQPARPLMFLGPHVLDIYLARGQRALGDDPALPTGPPRPSLHPDYLAGLQAQLDLHLASL
Nucleotide Sequence CTGCTCATTGCCCTTGCGGACCAGGCGCAGCCGGCGCGGCCGCTCATGTTCCTTGGACCGCATGTGCTGGATATATACCTGGCAAGGGGACAGCGAGCCTTGGGTGATGACCCTGCCCTGCCCACAGGCCCACCTCGGCCCTCCCTCCACCCAGATTACCTGGCAGGCCTTCAGGCTCAGCTTGATCTCCACCTGGCTAGTCTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab