CircRNA Information

General Information
circRNA Basic Information
CircID chr17:1879670|1880609
Strand +
CircType exon
Host Gene ENSG00000132383.10;
Algorism CIRI2;
Sequence CGAAATCAGAGACTCGGGCTCCTTTGATAGCCAACACGGGCTGTCTAGAACCATCAAATTTATCAGCATCTTCCCCCCACAGTGTAGCAGTCACCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:1879670|1880609 hsa-miR-221-5p 0 0 1
chr17:1879670|1880609 hsa-miR-221-3p 0 0 1
chr17:1879670|1880609 hsa-miR-222-5p 0 0 1
chr17:1879670|1880609 hsa-miR-222-3p 0 0 1
chr17:1879670|1880609 hsa-miR-134-5p 0 0 1
chr17:1879670|1880609 hsa-miR-134-3p 0 0 1
chr17:1879670|1880609 hsa-miR-593-5p 0 0 1
chr17:1879670|1880609 hsa-miR-593-3p 0 0 1
chr17:1879670|1880609 hsa-miR-625-5p 0 0 1
chr17:1879670|1880609 hsa-miR-625-3p 0 0 1
chr17:1879670|1880609 hsa-miR-491-5p 0 0 1
chr17:1879670|1880609 hsa-miR-518d-5p 0 0 1
chr17:1879670|1880609 hsa-miR-519b-5p 0 0 1
chr17:1879670|1880609 hsa-miR-519c-5p 0 0 1
chr17:1879670|1880609 hsa-miR-520c-5p 0 0 1
chr17:1879670|1880609 hsa-miR-513a-3p 0 0 1
chr17:1879670|1880609 hsa-miR-526a 0 0 1
chr17:1879670|1880609 hsa-miR-632 1 0 0
chr17:1879670|1880609 hsa-miR-1183 1 0 0
chr17:1879670|1880609 hsa-miR-1275 1 0 0
chr17:1879670|1880609 hsa-miR-4322 1 0 0
chr17:1879670|1880609 hsa-miR-4271 1 0 0
chr17:1879670|1880609 hsa-miR-4447 1 0 0
chr17:1879670|1880609 hsa-miR-4502 0 1 0
chr17:1879670|1880609 hsa-miR-4525 1 0 0
chr17:1879670|1880609 hsa-miR-4739 1 0 0
chr17:1879670|1880609 hsa-miR-5698 1 0 0
chr17:1879670|1880609 hsa-miR-6077 1 0 0
chr17:1879670|1880609 hsa-miR-6745 1 0 0
chr17:1879670|1880609 hsa-miR-9500 1 0 0
chr17:1879670|1880609 hsa-miR-203a-5p 0 1 0
chr17:1879670|1880609 hsa-miR-6734-5p 1 0 0
chr17:1879670|1880609 hsa-miR-31-5p 1 0 0
chr17:1879670|1880609 hsa-miR-218-2-3p 0 1 0
chr17:1879670|1880609 hsa-miR-3150a-3p 1 0 0
chr17:1879670|1880609 hsa-miR-6825-5p 1 0 0
chr17:1879670|1880609 hsa-miR-6894-5p 1 0 0
chr17:1879670|1880609 hsa-miR-139-3p 1 0 0
chr17:1879670|1880609 hsa-miR-7114-5p 1 0 0
chr17:1879670|1880609 hsa-miR-6880-5p 1 0 0
chr17:1879670|1880609 hsa-miR-6759-5p 1 0 0
chr17:1879670|1880609 hsa-miR-8069 1 1 0
chr17:1879670|1880609 hsa-miR-6742-5p 1 0 0
chr17:1879670|1880609 hsa-miR-3180-3p 1 0 0
chr17:1879670|1880609 hsa-miR-6748-5p 1 0 0
chr17:1879670|1880609 hsa-miR-6796-5p 1 1 0
chr17:1879670|1880609 hsa-miR-6829-5p 1 0 0
chr17:1879670|1880609 hsa-miR-6827-5p 1 0 0
chr17:1879670|1880609 hsa-miR-182-3p 0 1 0
chr17:1879670|1880609 hsa-miR-4793-3p 1 0 0
chr17:1879670|1880609 hsa-miR-6786-5p 1 0 0
chr17:1879670|1880609 hsa-miR-6835-5p 1 0 0
chr17:1879670|1880609 hsa-miR-7109-5p 1 1 0
chr17:1879670|1880609 hsa-miR-106b-3p 1 0 0
chr17:1879670|1880609 hsa-miR-509-3p 1 0 0
chr17:1879670|1880609 hsa-miR-6856-3p 0 1 0
chr17:1879670|1880609 hsa-miR-6789-3p 1 0 0
chr17:1879670|1880609 hsa-miR-5002-3p 1 0 0
chr17:1879670|1880609 hsa-miR-1233-5p 1 0 0
chr17:1879670|1880609 hsa-miR-6769b-5p 1 0 0
chr17:1879670|1880609 hsa-miR-6778-5p 1 0 0
chr17:1879670|1880609 hsa-miR-6812-5p 1 0 0
chr17:1879670|1880609 hsa-miR-6870-5p 1 0 0
chr17:1879670|1880609 hsa-miR-6803-5p 1 0 0
chr17:1879670|1880609 hsa-miR-1249-5p 1 0 0
chr17:1879670|1880609 hsa-miR-6751-5p 1 0 0
chr17:1879670|1880609 hsa-miR-6797-5p 1 0 0
chr17:1879670|1880609 hsa-miR-7111-5p 1 0 0
chr17:1879670|1880609 hsa-miR-6780b-5p 1 0 0
chr17:1879670|1880609 hsa-miR-1237-5p 1 0 0
chr17:1879670|1880609 hsa-miR-328-5p 1 0 0
chr17:1879670|1880609 hsa-miR-4725-3p 1 0 0
chr17:1879670|1880609 hsa-miR-6729-5p 1 0 0
chr17:1879670|1880609 hsa-miR-6795-5p 1 1 0
chr17:1879670|1880609 hsa-miR-6887-5p 1 1 0
chr17:1879670|1880609 hsa-miR-4723-5p 1 0 0
chr17:1879670|1880609 hsa-miR-6885-5p 1 0 0
chr17:1879670|1880609 hsa-miR-939-5p 1 0 0
chr17:1879670|1880609 hsa-miR-4472 1 1 0
chr17:1879670|1880609 hsa-miR-4716-3p 1 0 0
chr17:1879670|1880609 hsa-miR-141-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr17:1879670|1880609
ORF Type ORF1
Protein Length 27
Nucleotide Length 81
Protein Sequence MWGEDADKFDGSRQPVLAIKGARVSDF
Nucleotide Sequence CTGTGGGGGGAAGATGCTGATAAATTTGATGGTTCTAGACAGCCCGTGTTGGCTATCAAAGGAGCCCGAGTCTCTGATTTC
CircID chr17:1879670|1880609
ORF Type ORF2
Protein Length 30
Nucleotide Length 90
Protein Sequence MLHCGGKMLINLMVLDSPCWLSKEPESLIS
Nucleotide Sequence CTGCTACACTGTGGGGGGAAGATGCTGATAAATTTGATGGTTCTAGACAGCCCGTGTTGGCTATCAAAGGAGCCCGAGTCTCTGATTTCG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab