CircRNA Information

General Information
circRNA Basic Information
CircID chr17:18911103|18911251
Strand +
CircType exon
Host Gene ENSG00000141127.13;
Algorism CIRI2;
Sequence TGGGGATCTCCAGGCTGGGGTGGATGGCAGCCACACTTCTGACCATGGGTGGGGAATGCCGTCCATCCACCAAGTCCGACTCGGCATCCTGCGCCTCTCCATGAATCACTGCAATTCCCAGGCGCAGGCGCTCAGCAAAAGACTGTGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:18911103|18911251 hsa-miR-184 0 0 1
chr17:18911103|18911251 hsa-miR-185-5p 0 0 1
chr17:18911103|18911251 hsa-miR-185-3p 0 0 1
chr17:18911103|18911251 hsa-miR-595 0 0 1
chr17:18911103|18911251 hsa-miR-604 0 0 1
chr17:18911103|18911251 hsa-miR-620 0 0 1
chr17:18911103|18911251 hsa-miR-647 0 1 1
chr17:18911103|18911251 hsa-miR-661 0 0 1
chr17:18911103|18911251 hsa-miR-1270 0 0 1
chr17:18911103|18911251 hsa-miR-339-3p 0 0 1
chr17:18911103|18911251 hsa-miR-490-5p 0 0 1
chr17:18911103|18911251 hsa-miR-628-5p 0 0 1
chr17:18911103|18911251 hsa-miR-644 0 0 1
chr17:18911103|18911251 hsa-miR-1254 0 0 1
chr17:18911103|18911251 hsa-miR-638 1 0 0
chr17:18911103|18911251 hsa-miR-644a 0 1 0
chr17:18911103|18911251 hsa-miR-1264 0 1 0
chr17:18911103|18911251 hsa-miR-1260a 1 0 0
chr17:18911103|18911251 hsa-miR-1260b 1 0 0
chr17:18911103|18911251 hsa-miR-3197 1 1 0
chr17:18911103|18911251 hsa-miR-4254 0 1 0
chr17:18911103|18911251 hsa-miR-4450 1 0 0
chr17:18911103|18911251 hsa-miR-4663 0 1 0
chr17:18911103|18911251 hsa-miR-8059 1 0 0
chr17:18911103|18911251 hsa-miR-8062 0 1 0
chr17:18911103|18911251 hsa-miR-8089 1 0 0
chr17:18911103|18911251 hsa-miR-197-3p 1 0 0
chr17:18911103|18911251 hsa-miR-6857-5p 1 0 0
chr17:18911103|18911251 hsa-miR-766-3p 1 0 0
chr17:18911103|18911251 hsa-miR-6799-5p 1 0 0
chr17:18911103|18911251 hsa-miR-4474-3p 0 1 0
chr17:18911103|18911251 hsa-miR-3189-5p 1 0 0
chr17:18911103|18911251 hsa-miR-6716-5p 1 0 0
chr17:18911103|18911251 hsa-miR-6763-3p 1 0 0
chr17:18911103|18911251 hsa-miR-7108-3p 1 0 0
chr17:18911103|18911251 hsa-miR-1909-5p 0 1 0
chr17:18911103|18911251 hsa-miR-6720-3p 0 1 0
chr17:18911103|18911251 hsa-miR-4758-3p 1 0 0
chr17:18911103|18911251 hsa-miR-7151-5p 0 1 0
chr17:18911103|18911251 hsa-miR-4433a-5p 1 0 0
chr17:18911103|18911251 hsa-miR-4433b-5p 1 0 0
chr17:18911103|18911251 hsa-miR-3162-3p 1 0 0
chr17:18911103|18911251 hsa-miR-6812-5p 1 0 0
chr17:18911103|18911251 hsa-miR-6726-5p 1 0 0
chr17:18911103|18911251 hsa-miR-10401-5p 1 0 0
chr17:18911103|18911251 hsa-miR-3689a-3p 1 0 0
chr17:18911103|18911251 hsa-miR-6758-5p 0 1 0
chr17:18911103|18911251 hsa-miR-6856-5p 0 1 0
chr17:18911103|18911251 hsa-miR-6855-5p 1 0 0
chr17:18911103|18911251 hsa-miR-4646-5p 1 1 0
chr17:18911103|18911251 hsa-miR-6784-3p 1 0 0
chr17:18911103|18911251 hsa-miR-6862-3p 1 0 0
chr17:18911103|18911251 hsa-miR-6817-5p 0 1 0
chr17:18911103|18911251 hsa-miR-4769-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:18911103|18911251
ORF Type ORF1
Protein Length 31
Nucleotide Length 93
Protein Sequence MPSIHQVRLGILRLSMNHCNSQAQALSKRLC
Nucleotide Sequence ATGCCGTCCATCCACCAAGTCCGACTCGGCATCCTGCGCCTCTCCATGAATCACTGCAATTCCCAGGCGCAGGCGCTCAGCAAAAGACTGTGC
CircID chr17:18911103|18911251
ORF Type ORF2
Protein Length 29
Nucleotide Length 90
Protein Sequence MGWMAATLLTMGGECRPSTKSDSASCASP
Nucleotide Sequence CTGGGGTGGATGGCAGCCACACTTCTGACCATGGGTGGGGAATGCCGTCCATCCACCAAGTCCGACTCGGCATCCTGCGCCTCTCCATGA
CircID chr17:18911103|18911251
ORF Type ORF3
Protein Length 42
Nucleotide Length 126
Protein Sequence MRLGIAVIHGEAQDAESDLVDGRHSPPMVRSVAAIHPSLEIP
Nucleotide Sequence CTGCGCCTGGGAATTGCAGTGATTCATGGAGAGGCGCAGGATGCCGAGTCGGACTTGGTGGATGGACGGCATTCCCCACCCATGGTCAGAAGTGTGGCTGCCATCCACCCCAGCCTGGAGATCCCC
CircID chr17:18911103|18911251
ORF Type ORF4
Protein Length 34
Nucleotide Length 102
Protein Sequence MERRRMPSRTWWMDGIPHPWSEVWLPSTPAWRSP
Nucleotide Sequence ATGGAGAGGCGCAGGATGCCGAGTCGGACTTGGTGGATGGACGGCATTCCCCACCCATGGTCAGAAGTGTGGCTGCCATCCACCCCAGCCTGGAGATCCCCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab