CircRNA Information

General Information
circRNA Basic Information
CircID chr17:19648969|19649124
Strand +
CircType exon
Host Gene ENSG00000072210.17;
Algorism CIRI2;
Sequence CTTGCACAGGTCGGCGGCGATGGCCGTCAGGATATCCTTCTCGCGCTCCTGCACCATCCTCCGCAGGGCCTCCAGCTGCTGCAGCCGAAACCGCAGAGGTCGCGACCGGCCGGACAGGAACGCCTGTCGGACCCGCCGGACTTCGAGCTCCATGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:19648969|19649124 hsa-miR-19a-5p 0 0 1
chr17:19648969|19649124 hsa-miR-19a-3p 0 0 1
chr17:19648969|19649124 hsa-miR-107 0 0 1
chr17:19648969|19649124 hsa-miR-646 0 0 1
chr17:19648969|19649124 hsa-miR-650 0 0 1
chr17:19648969|19649124 hsa-miR-658 1 0 1
chr17:19648969|19649124 hsa-miR-1286 0 0 1
chr17:19648969|19649124 hsa-miR-1291 0 0 1
chr17:19648969|19649124 hsa-miR-1184 0 0 1
chr17:19648969|19649124 hsa-miR-1207-3p 0 0 1
chr17:19648969|19649124 hsa-miR-103 0 0 1
chr17:19648969|19649124 hsa-miR-19b 0 0 1
chr17:19648969|19649124 hsa-miR-637 1 0 0
chr17:19648969|19649124 hsa-miR-638 1 0 0
chr17:19648969|19649124 hsa-miR-3137 1 0 0
chr17:19648969|19649124 hsa-miR-3652 1 0 0
chr17:19648969|19649124 hsa-miR-3135b 1 0 0
chr17:19648969|19649124 hsa-miR-4466 1 0 0
chr17:19648969|19649124 hsa-miR-4467 1 0 0
chr17:19648969|19649124 hsa-miR-3960 1 0 0
chr17:19648969|19649124 hsa-miR-4647 1 0 0
chr17:19648969|19649124 hsa-miR-4734 1 0 0
chr17:19648969|19649124 hsa-miR-4767 1 0 0
chr17:19648969|19649124 hsa-miR-5787 1 0 0
chr17:19648969|19649124 hsa-miR-6165 1 0 0
chr17:19648969|19649124 hsa-miR-4731-5p 1 0 0
chr17:19648969|19649124 hsa-miR-4665-3p 1 0 0
chr17:19648969|19649124 hsa-miR-671-5p 1 0 0
chr17:19648969|19649124 hsa-miR-6894-5p 1 0 0
chr17:19648969|19649124 hsa-miR-6728-5p 1 0 0
chr17:19648969|19649124 hsa-miR-6833-5p 1 0 0
chr17:19648969|19649124 hsa-miR-6089 1 0 0
chr17:19648969|19649124 hsa-miR-7847-3p 1 0 0
chr17:19648969|19649124 hsa-miR-4722-5p 1 0 0
chr17:19648969|19649124 hsa-miR-8069 1 0 0
chr17:19648969|19649124 hsa-miR-6772-5p 1 0 0
chr17:19648969|19649124 hsa-miR-4743-5p 1 0 0
chr17:19648969|19649124 hsa-miR-5010-5p 1 0 0
chr17:19648969|19649124 hsa-miR-2277-5p 1 0 0
chr17:19648969|19649124 hsa-miR-10400-5p 1 0 0
chr17:19648969|19649124 hsa-miR-6769b-5p 1 0 0
chr17:19648969|19649124 hsa-miR-6775-5p 1 0 0
chr17:19648969|19649124 hsa-miR-5001-5p 1 0 0
chr17:19648969|19649124 hsa-miR-6726-5p 1 0 0
chr17:19648969|19649124 hsa-miR-6756-5p 1 0 0
chr17:19648969|19649124 hsa-miR-6722-3p 1 0 0
chr17:19648969|19649124 hsa-miR-1909-3p 1 0 0
chr17:19648969|19649124 hsa-miR-6848-5p 1 0 0
chr17:19648969|19649124 hsa-miR-939-5p 1 0 0
chr17:19648969|19649124 hsa-miR-4665-5p 1 0 0
chr17:19648969|19649124 hsa-miR-6855-5p 1 0 0
chr17:19648969|19649124 hsa-miR-6785-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:19648969|19649124
ORF Type ORF1
Protein Length 36
Nucleotide Length 108
Protein Sequence MHHPPQGLQLLQPKPQRSRPAGQERLSDPPDFELHG
Nucleotide Sequence CTGCACCATCCTCCGCAGGGCCTCCAGCTGCTGCAGCCGAAACCGCAGAGGTCGCGACCGGCCGGACAGGAACGCCTGTCGGACCCGCCGGACTTCGAGCTCCATGGC
CircID chr17:19648969|19649124
ORF Type ORF2
Protein Length 51
Nucleotide Length 153
Protein Sequence LHRSAAMAVRISFSRSCTILRRASSCCSRNRRGRDRPDRNACRTRRTSSSM
Nucleotide Sequence TTGCACAGGTCGGCGGCGATGGCCGTCAGGATATCCTTCTCGCGCTCCTGCACCATCCTCCGCAGGGCCTCCAGCTGCTGCAGCCGAAACCGCAGAGGTCGCGACCGGCCGGACAGGAACGCCTGTCGGACCCGCCGGACTTCGAGCTCCATG
CircID chr17:19648969|19649124
ORF Type ORF3
Protein Length 51
Nucleotide Length 153
Protein Sequence MELEVRRVRQAFLSGRSRPLRFRLQQLEALRRMVQEREKDILTAIAADLCK
Nucleotide Sequence ATGGAGCTCGAAGTCCGGCGGGTCCGACAGGCGTTCCTGTCCGGCCGGTCGCGACCTCTGCGGTTTCGGCTGCAGCAGCTGGAGGCCCTGCGGAGGATGGTGCAGGAGCGCGAGAAGGATATCCTGACGGCCATCGCCGCCGACCTGTGCAAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab