CircRNA Information

General Information
circRNA Basic Information
CircID chr17:19676875|19677017
Strand +
CircType exon
Host Gene ENSG00000072210.17;
Algorism CIRI2;
Sequence TTCTGACTTGCTCAGGGGATCCTCTTGCCATCAATTCCCTTCAGTATGACCAACCGCAGTGGCTTACTCGCTTCTTGTCCAGACCATCCACCATCTGTCTGCCCCATGATGCTCTCAAACCCCAAAGTCCTAATATCCCAGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:19676875|19677017 hsa-miR-31-5p 0 0 1
chr17:19676875|19677017 hsa-miR-31-3p 0 0 1
chr17:19676875|19677017 hsa-miR-422a 0 0 1
chr17:19676875|19677017 hsa-miR-661 0 0 1
chr17:19676875|19677017 hsa-miR-1324 0 0 1
chr17:19676875|19677017 hsa-miR-486-3p 1 0 1
chr17:19676875|19677017 hsa-miR-331-3p 0 0 1
chr17:19676875|19677017 hsa-miR-125a-5p 0 0 1
chr17:19676875|19677017 hsa-miR-125b 0 0 1
chr17:19676875|19677017 hsa-miR-1308 0 0 1
chr17:19676875|19677017 hsa-miR-378 0 0 1
chr17:19676875|19677017 hsa-miR-760 1 0 0
chr17:19676875|19677017 hsa-miR-1183 1 0 0
chr17:19676875|19677017 hsa-miR-1293 1 1 0
chr17:19676875|19677017 hsa-miR-3147 1 0 0
chr17:19676875|19677017 hsa-miR-3165 0 1 0
chr17:19676875|19677017 hsa-miR-3170 1 1 0
chr17:19676875|19677017 hsa-miR-3196 1 0 0
chr17:19676875|19677017 hsa-miR-4314 1 0 0
chr17:19676875|19677017 hsa-miR-4319 0 1 0
chr17:19676875|19677017 hsa-miR-4271 1 0 0
chr17:19676875|19677017 hsa-miR-4498 1 0 0
chr17:19676875|19677017 hsa-miR-1587 1 0 0
chr17:19676875|19677017 hsa-miR-4688 1 0 0
chr17:19676875|19677017 hsa-miR-4689 1 0 0
chr17:19676875|19677017 hsa-miR-4734 1 0 0
chr17:19676875|19677017 hsa-miR-5090 1 0 0
chr17:19676875|19677017 hsa-miR-5572 1 0 0
chr17:19676875|19677017 hsa-miR-6086 1 0 0
chr17:19676875|19677017 hsa-miR-6860 1 0 0
chr17:19676875|19677017 hsa-miR-7515 1 1 0
chr17:19676875|19677017 hsa-miR-8052 1 0 0
chr17:19676875|19677017 hsa-miR-8055 1 0 0
chr17:19676875|19677017 hsa-miR-8056 1 0 0
chr17:19676875|19677017 hsa-miR-12119 1 0 0
chr17:19676875|19677017 hsa-miR-6734-5p 1 0 0
chr17:19676875|19677017 hsa-miR-7155-5p 1 0 0
chr17:19676875|19677017 hsa-miR-6747-5p 1 0 0
chr17:19676875|19677017 hsa-miR-6894-5p 1 0 0
chr17:19676875|19677017 hsa-miR-6728-5p 1 1 0
chr17:19676875|19677017 hsa-miR-8071 1 0 0
chr17:19676875|19677017 hsa-miR-1227-5p 1 0 0
chr17:19676875|19677017 hsa-miR-6515-5p 1 0 0
chr17:19676875|19677017 hsa-miR-3192-5p 1 0 0
chr17:19676875|19677017 hsa-miR-6873-5p 1 0 0
chr17:19676875|19677017 hsa-miR-6890-5p 1 0 0
chr17:19676875|19677017 hsa-miR-4474-3p 1 0 0
chr17:19676875|19677017 hsa-miR-197-5p 1 0 0
chr17:19676875|19677017 hsa-miR-8069 1 0 0
chr17:19676875|19677017 hsa-miR-3180-3p 1 0 0
chr17:19676875|19677017 hsa-miR-6748-5p 1 0 0
chr17:19676875|19677017 hsa-miR-6796-5p 1 0 0
chr17:19676875|19677017 hsa-miR-6821-5p 1 0 0
chr17:19676875|19677017 hsa-miR-6852-5p 1 0 0
chr17:19676875|19677017 hsa-miR-1226-5p 1 0 0
chr17:19676875|19677017 hsa-miR-193b-5p 1 1 0
chr17:19676875|19677017 hsa-miR-149-3p 1 0 0
chr17:19676875|19677017 hsa-miR-3616-3p 1 1 0
chr17:19676875|19677017 hsa-miR-193a-5p 1 0 0
chr17:19676875|19677017 hsa-miR-3162-5p 1 0 0
chr17:19676875|19677017 hsa-miR-6864-5p 1 0 0
chr17:19676875|19677017 hsa-miR-3189-3p 1 0 0
chr17:19676875|19677017 hsa-miR-423-5p 1 0 0
chr17:19676875|19677017 hsa-miR-4661-3p 0 1 0
chr17:19676875|19677017 hsa-miR-4750-5p 1 0 0
chr17:19676875|19677017 hsa-miR-5089-5p 1 0 0
chr17:19676875|19677017 hsa-miR-6767-5p 1 0 0
chr17:19676875|19677017 hsa-miR-6769b-5p 1 1 0
chr17:19676875|19677017 hsa-miR-6778-5p 1 0 0
chr17:19676875|19677017 hsa-miR-6812-5p 1 0 0
chr17:19676875|19677017 hsa-miR-6816-5p 1 0 0
chr17:19676875|19677017 hsa-miR-6870-5p 1 0 0
chr17:19676875|19677017 hsa-miR-5001-5p 1 0 0
chr17:19676875|19677017 hsa-miR-6743-5p 1 0 0
chr17:19676875|19677017 hsa-miR-6769a-5p 1 0 0
chr17:19676875|19677017 hsa-miR-6819-5p 1 0 0
chr17:19676875|19677017 hsa-miR-6842-5p 1 0 0
chr17:19676875|19677017 hsa-miR-1249-5p 1 1 0
chr17:19676875|19677017 hsa-miR-6797-5p 1 0 0
chr17:19676875|19677017 hsa-miR-3620-5p 1 0 0
chr17:19676875|19677017 hsa-miR-1237-5p 1 0 0
chr17:19676875|19677017 hsa-miR-4632-5p 1 0 0
chr17:19676875|19677017 hsa-miR-6735-5p 1 0 0
chr17:19676875|19677017 hsa-miR-6738-5p 1 0 0
chr17:19676875|19677017 hsa-miR-6795-5p 1 0 0
chr17:19676875|19677017 hsa-miR-6887-5p 1 0 0
chr17:19676875|19677017 hsa-miR-3187-5p 1 0 0
chr17:19676875|19677017 hsa-miR-365a-5p 1 0 0
chr17:19676875|19677017 hsa-miR-365b-5p 1 0 0
chr17:19676875|19677017 hsa-miR-6511a-5p 1 0 0
chr17:19676875|19677017 hsa-miR-6511b-5p 1 0 0
chr17:19676875|19677017 hsa-miR-6855-5p 1 1 0
chr17:19676875|19677017 hsa-miR-324-3p 0 1 0
chr17:19676875|19677017 hsa-miR-4646-5p 1 0 0
chr17:19676875|19677017 hsa-miR-769-3p 1 0 0
chr17:19676875|19677017 hsa-miR-5009-5p 1 0 0
chr17:19676875|19677017 hsa-miR-619-5p 1 0 0
chr17:19676875|19677017 hsa-miR-6506-5p 0 1 0
chr17:19676875|19677017 hsa-miR-4653-5p 0 1 0
chr17:19676875|19677017 hsa-miR-200c-3p 0 1 0
chr17:19676875|19677017 hsa-miR-151a-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:19676875|19677017
ORF Type ORF1
Protein Length 39
Nucleotide Length 117
Protein Sequence MPSIPFSMTNRSGLLASCPDHPPSVCPMMLSNPKVLISQ
Nucleotide Sequence TTGCCATCAATTCCCTTCAGTATGACCAACCGCAGTGGCTTACTCGCTTCTTGTCCAGACCATCCACCATCTGTCTGCCCCATGATGCTCTCAAACCCCAAAGTCCTAATATCCCAG
CircID chr17:19676875|19677017
ORF Type ORF2
Protein Length 47
Nucleotide Length 141
Protein Sequence LTCSGDPLAINSLQYDQPQWLTRFLSRPSTICLPHDALKPQSPNIPG
Nucleotide Sequence CTGACTTGCTCAGGGGATCCTCTTGCCATCAATTCCCTTCAGTATGACCAACCGCAGTGGCTTACTCGCTTCTTGTCCAGACCATCCACCATCTGTCTGCCCCATGATGCTCTCAAACCCCAAAGTCCTAATATCCCAGGC
CircID chr17:19676875|19677017
ORF Type ORF3
Protein Length 37
Nucleotide Length 114
Protein Sequence MGFESIMGQTDGGWSGQEASKPLRLVILKGIDGKRIP
Nucleotide Sequence TTGGGGTTTGAGAGCATCATGGGGCAGACAGATGGTGGATGGTCTGGACAAGAAGCGAGTAAGCCACTGCGGTTGGTCATACTGAAGGGAATTGATGGCAAGAGGATCCCCTGA
CircID chr17:19676875|19677017
ORF Type ORF4
Protein Length 25
Nucleotide Length 78
Protein Sequence MRASWGRQMVDGLDKKRVSHCGWSY
Nucleotide Sequence TTGAGAGCATCATGGGGCAGACAGATGGTGGATGGTCTGGACAAGAAGCGAGTAAGCCACTGCGGTTGGTCATACTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab