CircRNA Information

General Information
circRNA Basic Information
CircID chr17:20169675|20169805
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence ATTTTTTCCCAAGAGACAGGGGCTTGCTCTGTTGTTCAGGCTGGTCTCGAACTCCTGGCCTCAAGGGATCCTCCTGCCCTGGCCTCCCAAAATGCTGGTGTAACAGGCATGAGCCACCGCTCATGGCCAGA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:20169675|20169805 hsa-miR-593-5p 0 0 1
chr17:20169675|20169805 hsa-miR-593-3p 0 0 1
chr17:20169675|20169805 hsa-miR-623 0 1 1
chr17:20169675|20169805 hsa-miR-634 0 0 1
chr17:20169675|20169805 hsa-miR-635 0 0 1
chr17:20169675|20169805 hsa-miR-665 1 1 1
chr17:20169675|20169805 hsa-miR-1226-5p 0 0 1
chr17:20169675|20169805 hsa-miR-1226-3p 0 0 1
chr17:20169675|20169805 hsa-miR-1304-5p 0 0 1
chr17:20169675|20169805 hsa-miR-1304-3p 0 0 1
chr17:20169675|20169805 hsa-miR-339-5p 0 0 1
chr17:20169675|20169805 hsa-miR-188-5p 0 1 1
chr17:20169675|20169805 hsa-miR-338-3p 0 0 1
chr17:20169675|20169805 hsa-miR-24 0 0 1
chr17:20169675|20169805 hsa-miR-638 1 0 0
chr17:20169675|20169805 hsa-miR-663a 1 0 0
chr17:20169675|20169805 hsa-miR-3141 1 0 0
chr17:20169675|20169805 hsa-miR-4421 0 1 0
chr17:20169675|20169805 hsa-miR-3960 1 0 0
chr17:20169675|20169805 hsa-miR-4710 1 0 0
chr17:20169675|20169805 hsa-miR-6069 1 0 0
chr17:20169675|20169805 hsa-miR-6165 1 0 0
chr17:20169675|20169805 hsa-miR-203a-5p 0 1 0
chr17:20169675|20169805 hsa-miR-4747-3p 1 0 0
chr17:20169675|20169805 hsa-miR-7106-5p 1 0 0
chr17:20169675|20169805 hsa-miR-6894-5p 1 0 0
chr17:20169675|20169805 hsa-miR-6799-5p 1 0 0
chr17:20169675|20169805 hsa-miR-4786-5p 0 1 0
chr17:20169675|20169805 hsa-miR-6089 1 1 0
chr17:20169675|20169805 hsa-miR-3192-5p 1 0 0
chr17:20169675|20169805 hsa-miR-4722-5p 1 1 0
chr17:20169675|20169805 hsa-miR-3187-3p 0 1 0
chr17:20169675|20169805 hsa-miR-6721-5p 1 1 0
chr17:20169675|20169805 hsa-miR-6798-5p 1 0 0
chr17:20169675|20169805 hsa-miR-6821-5p 1 0 0
chr17:20169675|20169805 hsa-miR-5008-5p 1 0 0
chr17:20169675|20169805 hsa-miR-5006-5p 1 1 0
chr17:20169675|20169805 hsa-miR-7109-5p 1 0 0
chr17:20169675|20169805 hsa-miR-4640-5p 1 0 0
chr17:20169675|20169805 hsa-miR-6514-3p 0 1 0
chr17:20169675|20169805 hsa-miR-6771-5p 1 0 0
chr17:20169675|20169805 hsa-miR-149-3p 1 0 0
chr17:20169675|20169805 hsa-miR-6824-5p 1 0 0
chr17:20169675|20169805 hsa-miR-6781-5p 1 0 0
chr17:20169675|20169805 hsa-miR-6769a-3p 0 1 0
chr17:20169675|20169805 hsa-miR-4776-5p 1 0 0
chr17:20169675|20169805 hsa-miR-4661-3p 0 1 0
chr17:20169675|20169805 hsa-miR-6501-3p 0 1 0
chr17:20169675|20169805 hsa-miR-1207-5p 1 0 0
chr17:20169675|20169805 hsa-miR-1233-5p 1 1 0
chr17:20169675|20169805 hsa-miR-1273h-5p 1 1 0
chr17:20169675|20169805 hsa-miR-4763-3p 1 0 0
chr17:20169675|20169805 hsa-miR-6778-5p 1 0 0
chr17:20169675|20169805 hsa-miR-6787-5p 1 0 0
chr17:20169675|20169805 hsa-miR-6775-5p 1 0 0
chr17:20169675|20169805 hsa-miR-11181-3p 1 0 0
chr17:20169675|20169805 hsa-miR-1249-5p 1 0 0
chr17:20169675|20169805 hsa-miR-6722-3p 1 0 0
chr17:20169675|20169805 hsa-miR-6774-5p 1 0 0
chr17:20169675|20169805 hsa-miR-6779-5p 1 0 0
chr17:20169675|20169805 hsa-miR-6780a-5p 1 1 0
chr17:20169675|20169805 hsa-miR-6875-5p 1 0 0
chr17:20169675|20169805 hsa-miR-6879-5p 1 0 0
chr17:20169675|20169805 hsa-miR-4728-5p 1 0 0
chr17:20169675|20169805 hsa-miR-328-5p 1 0 0
chr17:20169675|20169805 hsa-miR-4649-5p 1 0 0
chr17:20169675|20169805 hsa-miR-4685-5p 1 1 0
chr17:20169675|20169805 hsa-miR-4726-5p 1 0 0
chr17:20169675|20169805 hsa-miR-6729-5p 1 0 0
chr17:20169675|20169805 hsa-miR-6795-5p 1 0 0
chr17:20169675|20169805 hsa-miR-6887-5p 1 0 0
chr17:20169675|20169805 hsa-miR-4436b-3p 0 1 0
chr17:20169675|20169805 hsa-miR-6845-5p 1 0 0
chr17:20169675|20169805 hsa-miR-6762-5p 1 0 0
chr17:20169675|20169805 hsa-miR-6837-5p 0 1 0
chr17:20169675|20169805 hsa-miR-7157-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:20169675|20169805
ORF Type ORF1
Protein Length 25
Nucleotide Length 75
Protein Sequence MASRDPPALASQNAGVTGMSHRSWP
Nucleotide Sequence CTGGCCTCAAGGGATCCTCCTGCCCTGGCCTCCCAAAATGCTGGTGTAACAGGCATGAGCCACCGCTCATGGCCA
CircID chr17:20169675|20169805
ORF Type ORF2
Protein Length 36
Nucleotide Length 108
Protein Sequence MLCCSGWSRTPGLKGSSCPGLPKCWCNRHEPPLMAR
Nucleotide Sequence TTGCTCTGTTGTTCAGGCTGGTCTCGAACTCCTGGCCTCAAGGGATCCTCCTGCCCTGGCCTCCCAAAATGCTGGTGTAACAGGCATGAGCCACCGCTCATGGCCAGA
CircID chr17:20169675|20169805
ORF Type ORF3
Protein Length 43
Nucleotide Length 129
Protein Sequence LAMSGGSCLLHQHFGRPGQEDPLRPGVRDQPEQQSKPLSLGKK
Nucleotide Sequence CTGGCCATGAGCGGTGGCTCATGCCTGTTACACCAGCATTTTGGGAGGCCAGGGCAGGAGGATCCCTTGAGGCCAGGAGTTCGAGACCAGCCTGAACAACAGAGCAAGCCCCTGTCTCTTGGGAAAAAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab