CircRNA Information

General Information
circRNA Basic Information
CircID chr17:2379146|2379502
Strand -
CircType exon
Host Gene ENSG00000141258.11;
Algorism CIRI2;
Sequence CGAGAGATCATCCGTGACAACAACATGGACTTCACTGACATCATCAAGTTTTTCAATGGTACGAGCTGGTCCAGCCATCCAGGCTGCCCTGAGCAGAGGTGTGGAGGCCCCCACCTCTGCCCCGCACACAGCTGGAGGGTTCTCAGGAATCCTGGGGGCCCTTCCCCAAAGGCCGGGATGTCAAGAATCTAGCAGAGCAGATGGAAACAGAGCAGGGTAGTCAGCCACCTCCTAGCCTGCTGCCCTTTCTCTGGGCCTCTCTACAGCTCTTCACGTTTCCCCCCAGAACGTGCTGAGCATCACGATGCCCAGGAGATCCTGCGGATTGCCCGGGACCTCGTCCACAAGGTGCAGATG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:2379146|2379502 hsa-miR-10a-5p 0 0 1
chr17:2379146|2379502 hsa-miR-10a-3p 0 0 1
chr17:2379146|2379502 hsa-miR-10b-5p 0 0 1
chr17:2379146|2379502 hsa-miR-10b-3p 0 0 1
chr17:2379146|2379502 hsa-miR-214-5p 0 0 1
chr17:2379146|2379502 hsa-miR-214-3p 0 0 1
chr17:2379146|2379502 hsa-miR-223-5p 0 0 1
chr17:2379146|2379502 hsa-miR-223-3p 0 0 1
chr17:2379146|2379502 hsa-miR-126-5p 0 0 1
chr17:2379146|2379502 hsa-miR-126-3p 0 0 1
chr17:2379146|2379502 hsa-miR-146a-5p 0 0 1
chr17:2379146|2379502 hsa-miR-146a-3p 0 0 1
chr17:2379146|2379502 hsa-miR-489-5p 0 0 1
chr17:2379146|2379502 hsa-miR-489-3p 0 0 1
chr17:2379146|2379502 hsa-miR-526b-5p 0 0 1
chr17:2379146|2379502 hsa-miR-526b-3p 0 0 1
chr17:2379146|2379502 hsa-miR-587 0 0 1
chr17:2379146|2379502 hsa-miR-589-5p 0 0 1
chr17:2379146|2379502 hsa-miR-589-3p 0 0 1
chr17:2379146|2379502 hsa-miR-612 0 1 1
chr17:2379146|2379502 hsa-miR-625-5p 0 0 1
chr17:2379146|2379502 hsa-miR-625-3p 0 0 1
chr17:2379146|2379502 hsa-miR-637 0 1 1
chr17:2379146|2379502 hsa-miR-766-5p 0 0 1
chr17:2379146|2379502 hsa-miR-766-3p 0 0 1
chr17:2379146|2379502 hsa-miR-147b-5p 0 0 1
chr17:2379146|2379502 hsa-miR-147b-3p 0 0 1
chr17:2379146|2379502 hsa-miR-744-5p 0 0 1
chr17:2379146|2379502 hsa-miR-744-3p 0 0 1
chr17:2379146|2379502 hsa-miR-1228-5p 0 0 1
chr17:2379146|2379502 hsa-miR-1228-3p 0 0 1
chr17:2379146|2379502 hsa-miR-1200 0 0 1
chr17:2379146|2379502 hsa-miR-1266-5p 0 0 1
chr17:2379146|2379502 hsa-miR-1266-3p 0 0 1
chr17:2379146|2379502 hsa-miR-296-5p 0 0 1
chr17:2379146|2379502 hsa-miR-486-3p 0 0 1
chr17:2379146|2379502 hsa-miR-361-3p 0 1 1
chr17:2379146|2379502 hsa-miR-767-3p 0 0 1
chr17:2379146|2379502 hsa-miR-146b-5p 0 0 1
chr17:2379146|2379502 hsa-miR-1285 0 0 1
chr17:2379146|2379502 hsa-miR-1254 0 0 1
chr17:2379146|2379502 hsa-miR-507 0 1 0
chr17:2379146|2379502 hsa-miR-661 1 1 0
chr17:2379146|2379502 hsa-miR-1294 0 1 0
chr17:2379146|2379502 hsa-miR-2110 0 1 0
chr17:2379146|2379502 hsa-miR-1193 1 0 0
chr17:2379146|2379502 hsa-miR-4324 0 1 0
chr17:2379146|2379502 hsa-miR-4257 0 1 0
chr17:2379146|2379502 hsa-miR-4281 0 1 0
chr17:2379146|2379502 hsa-miR-3943 0 1 0
chr17:2379146|2379502 hsa-miR-4449 0 1 0
chr17:2379146|2379502 hsa-miR-4538 1 1 0
chr17:2379146|2379502 hsa-miR-4686 0 1 0
chr17:2379146|2379502 hsa-miR-4688 0 1 0
chr17:2379146|2379502 hsa-miR-4706 0 1 0
chr17:2379146|2379502 hsa-miR-4739 0 1 0
chr17:2379146|2379502 hsa-miR-4741 1 0 0
chr17:2379146|2379502 hsa-miR-5090 0 1 0
chr17:2379146|2379502 hsa-miR-5681a 0 1 0
chr17:2379146|2379502 hsa-miR-6069 0 1 0
chr17:2379146|2379502 hsa-miR-8089 1 0 0
chr17:2379146|2379502 hsa-miR-432-3p 0 1 0
chr17:2379146|2379502 hsa-miR-92a-2-5p 0 1 0
chr17:2379146|2379502 hsa-miR-6840-3p 0 1 0
chr17:2379146|2379502 hsa-miR-3194-3p 0 1 0
chr17:2379146|2379502 hsa-miR-6089 1 0 0
chr17:2379146|2379502 hsa-miR-145-3p 0 1 0
chr17:2379146|2379502 hsa-miR-6820-5p 0 1 0
chr17:2379146|2379502 hsa-miR-6727-5p 1 1 0
chr17:2379146|2379502 hsa-miR-6842-3p 0 1 0
chr17:2379146|2379502 hsa-miR-6732-5p 1 1 0
chr17:2379146|2379502 hsa-miR-3130-3p 0 1 0
chr17:2379146|2379502 hsa-miR-6782-5p 0 1 0
chr17:2379146|2379502 hsa-miR-6728-3p 0 1 0
chr17:2379146|2379502 hsa-miR-30b-3p 0 1 0
chr17:2379146|2379502 hsa-miR-939-3p 0 1 0
chr17:2379146|2379502 hsa-miR-1226-5p 1 0 0
chr17:2379146|2379502 hsa-miR-3127-5p 0 1 0
chr17:2379146|2379502 hsa-miR-7161-3p 1 0 0
chr17:2379146|2379502 hsa-miR-4690-5p 1 1 0
chr17:2379146|2379502 hsa-miR-5584-5p 0 1 0
chr17:2379146|2379502 hsa-miR-2115-5p 0 1 0
chr17:2379146|2379502 hsa-miR-6828-3p 0 1 0
chr17:2379146|2379502 hsa-miR-6832-5p 0 1 0
chr17:2379146|2379502 hsa-miR-6755-3p 0 1 0
chr17:2379146|2379502 hsa-miR-424-3p 0 1 0
chr17:2379146|2379502 hsa-miR-3173-5p 0 1 0
chr17:2379146|2379502 hsa-miR-500a-3p 0 1 0
chr17:2379146|2379502 hsa-miR-6812-5p 1 0 0
chr17:2379146|2379502 hsa-miR-6775-5p 1 1 0
chr17:2379146|2379502 hsa-miR-1343-5p 1 0 0
chr17:2379146|2379502 hsa-miR-5001-5p 1 0 0
chr17:2379146|2379502 hsa-miR-6743-5p 1 1 0
chr17:2379146|2379502 hsa-miR-6756-5p 1 0 0
chr17:2379146|2379502 hsa-miR-6803-5p 1 0 0
chr17:2379146|2379502 hsa-miR-6851-5p 0 1 0
chr17:2379146|2379502 hsa-miR-6879-5p 0 1 0
chr17:2379146|2379502 hsa-miR-5196-5p 0 1 0
chr17:2379146|2379502 hsa-miR-6780b-5p 0 1 0
chr17:2379146|2379502 hsa-miR-328-5p 1 0 0
chr17:2379146|2379502 hsa-miR-3689a-3p 0 1 0
chr17:2379146|2379502 hsa-miR-4632-5p 1 1 0
chr17:2379146|2379502 hsa-miR-4725-3p 0 1 0
chr17:2379146|2379502 hsa-miR-6735-5p 0 1 0
chr17:2379146|2379502 hsa-miR-6795-5p 1 1 0
chr17:2379146|2379502 hsa-miR-6887-5p 0 1 0
chr17:2379146|2379502 hsa-miR-3187-5p 0 1 0
chr17:2379146|2379502 hsa-miR-4436b-3p 0 1 0
chr17:2379146|2379502 hsa-miR-6511b-5p 0 1 0
chr17:2379146|2379502 hsa-miR-6758-5p 0 1 0
chr17:2379146|2379502 hsa-miR-6856-5p 0 1 0
chr17:2379146|2379502 hsa-miR-3689d 0 1 0
chr17:2379146|2379502 hsa-miR-6792-3p 0 1 0
chr17:2379146|2379502 hsa-miR-6805-3p 1 1 0
chr17:2379146|2379502 hsa-miR-125a-5p 0 1 0
chr17:2379146|2379502 hsa-miR-6783-3p 0 1 0
chr17:2379146|2379502 hsa-miR-3619-5p 0 1 0
chr17:2379146|2379502 hsa-miR-99b-3p 1 0 0
chr17:2379146|2379502 hsa-miR-5195-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:2379146|2379502
ORF Type ORF1
Protein Length 55
Nucleotide Length 168
Protein Sequence MDFTDIIKFFNGTSWSSHPGCPEQRCGGPHLCPAHSWRVLRNPGGPSPKAGMSRI
Nucleotide Sequence ATGGACTTCACTGACATCATCAAGTTTTTCAATGGTACGAGCTGGTCCAGCCATCCAGGCTGCCCTGAGCAGAGGTGTGGAGGCCCCCACCTCTGCCCCGCACACAGCTGGAGGGTTCTCAGGAATCCTGGGGGCCCTTCCCCAAAGGCCGGGATGTCAAGAATCTAG
CircID chr17:2379146|2379502
ORF Type ORF2
Protein Length 61
Nucleotide Length 186
Protein Sequence MTSSSFSMVRAGPAIQAALSRGVEAPTSAPHTAGGFSGILGALPQRPGCQESSRADGNRAG
Nucleotide Sequence CTGACATCATCAAGTTTTTCAATGGTACGAGCTGGTCCAGCCATCCAGGCTGCCCTGAGCAGAGGTGTGGAGGCCCCCACCTCTGCCCCGCACACAGCTGGAGGGTTCTCAGGAATCCTGGGGGCCCTTCCCCAAAGGCCGGGATGTCAAGAATCTAGCAGAGCAGATGGAAACAGAGCAGGGTAG
CircID chr17:2379146|2379502
ORF Type ORF3
Protein Length 35
Nucleotide Length 105
Protein Sequence MGLSTALHVSPQNVLSITMPRRSCGLPGTSSTRCR
Nucleotide Sequence CTGGGCCTCTCTACAGCTCTTCACGTTTCCCCCCAGAACGTGCTGAGCATCACGATGCCCAGGAGATCCTGCGGATTGCCCGGGACCTCGTCCACAAGGTGCAGA
CircID chr17:2379146|2379502
ORF Type ORF4
Protein Length 59
Nucleotide Length 180
Protein Sequence MPRTQLEGSQESWGPFPKGRDVKNLAEQMETEQGSQPPPSLLPFLWASLQLFTFPPRTC
Nucleotide Sequence CTGCCCCGCACACAGCTGGAGGGTTCTCAGGAATCCTGGGGGCCCTTCCCCAAAGGCCGGGATGTCAAGAATCTAGCAGAGCAGATGGAAACAGAGCAGGGTAGTCAGCCACCTCCTAGCCTGCTGCCCTTTCTCTGGGCCTCTCTACAGCTCTTCACGTTTCCCCCCAGAACGTGCTGA
CircID chr17:2379146|2379502
ORF Type ORF5
Protein Length 27
Nucleotide Length 84
Protein Sequence MHLVDEVPGNPQDLLGIVMLSTFWGET
Nucleotide Sequence CTGCACCTTGTGGACGAGGTCCCGGGCAATCCGCAGGATCTCCTGGGCATCGTGATGCTCAGCACGTTCTGGGGGGAAACGTGA
CircID chr17:2379146|2379502
ORF Type ORF6
Protein Length 32
Nucleotide Length 96
Protein Sequence MLRAAWMAGPARTIEKLDDVSEVHVVVTDDLS
Nucleotide Sequence CTGCTCAGGGCAGCCTGGATGGCTGGACCAGCTCGTACCATTGAAAAACTTGATGATGTCAGTGAAGTCCATGTTGTTGTCACGGATGATCTCTCG
CircID chr17:2379146|2379502
ORF Type ORF7
Protein Length 48
Nucleotide Length 144
Protein Sequence MRTLQLCAGQRWGPPHLCSGQPGWLDQLVPLKNLMMSVKSMLLSRMIS
Nucleotide Sequence CTGAGAACCCTCCAGCTGTGTGCGGGGCAGAGGTGGGGGCCTCCACACCTCTGCTCAGGGCAGCCTGGATGGCTGGACCAGCTCGTACCATTGAAAAACTTGATGATGTCAGTGAAGTCCATGTTGTTGTCACGGATGATCTCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab