CircRNA Information

General Information
circRNA Basic Information
CircID chr17:2385621|2385771
Strand +
CircType exon
Host Gene ENSG00000070444.13;
Algorism CIRI2;
Sequence CCTGGGACCTATACAGAACAGAGGGCCAGAGCTAGGGCTGCTGCTTCTGCTCCAGCCCCTTTGCCTCTGTCCTCCCATCCCCTCAACACCCTGCTTCTCCCGGGGACGCTTTTGAGTGGGCCCTGCCCGGGGAGCTGCAGAGCAGCAGCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:2385621|2385771 hsa-miR-15a-5p 0 0 1
chr17:2385621|2385771 hsa-miR-15a-3p 0 0 1
chr17:2385621|2385771 hsa-miR-15b-5p 0 0 1
chr17:2385621|2385771 hsa-miR-15b-3p 0 0 1
chr17:2385621|2385771 hsa-miR-195-5p 0 0 1
chr17:2385621|2385771 hsa-miR-195-3p 0 0 1
chr17:2385621|2385771 hsa-miR-328-5p 0 0 1
chr17:2385621|2385771 hsa-miR-328-3p 0 0 1
chr17:2385621|2385771 hsa-miR-424-5p 0 0 1
chr17:2385621|2385771 hsa-miR-424-3p 0 0 1
chr17:2385621|2385771 hsa-miR-497-5p 0 0 1
chr17:2385621|2385771 hsa-miR-497-3p 0 0 1
chr17:2385621|2385771 hsa-miR-609 0 0 1
chr17:2385621|2385771 hsa-miR-1301-5p 0 0 1
chr17:2385621|2385771 hsa-miR-1301-3p 0 0 1
chr17:2385621|2385771 hsa-miR-298 0 1 1
chr17:2385621|2385771 hsa-miR-888-5p 0 0 1
chr17:2385621|2385771 hsa-miR-888-3p 0 0 1
chr17:2385621|2385771 hsa-miR-1205 0 0 1
chr17:2385621|2385771 hsa-miR-1291 0 0 1
chr17:2385621|2385771 hsa-miR-1184 0 0 1
chr17:2385621|2385771 hsa-miR-423-5p 0 0 1
chr17:2385621|2385771 hsa-miR-1207-5p 1 0 1
chr17:2385621|2385771 hsa-miR-16 0 0 1
chr17:2385621|2385771 hsa-miR-612 1 1 0
chr17:2385621|2385771 hsa-miR-762 0 1 0
chr17:2385621|2385771 hsa-miR-940 1 0 0
chr17:2385621|2385771 hsa-miR-1182 1 0 0
chr17:2385621|2385771 hsa-miR-4270 1 0 0
chr17:2385621|2385771 hsa-miR-4281 1 0 0
chr17:2385621|2385771 hsa-miR-4430 0 1 0
chr17:2385621|2385771 hsa-miR-4449 1 0 0
chr17:2385621|2385771 hsa-miR-3135b 0 1 0
chr17:2385621|2385771 hsa-miR-4468 0 1 0
chr17:2385621|2385771 hsa-miR-4498 0 1 0
chr17:2385621|2385771 hsa-miR-4651 1 0 0
chr17:2385621|2385771 hsa-miR-4669 1 0 0
chr17:2385621|2385771 hsa-miR-4706 1 0 0
chr17:2385621|2385771 hsa-miR-4739 1 1 0
chr17:2385621|2385771 hsa-miR-5691 0 1 0
chr17:2385621|2385771 hsa-miR-5703 0 1 0
chr17:2385621|2385771 hsa-miR-6081 0 1 0
chr17:2385621|2385771 hsa-miR-6085 0 1 0
chr17:2385621|2385771 hsa-miR-6127 1 0 0
chr17:2385621|2385771 hsa-miR-6165 1 0 0
chr17:2385621|2385771 hsa-miR-8085 1 0 0
chr17:2385621|2385771 hsa-miR-6734-5p 1 1 0
chr17:2385621|2385771 hsa-miR-3194-3p 0 1 0
chr17:2385621|2385771 hsa-miR-6747-5p 1 0 0
chr17:2385621|2385771 hsa-miR-7106-5p 0 1 0
chr17:2385621|2385771 hsa-miR-6799-5p 1 0 0
chr17:2385621|2385771 hsa-miR-6510-5p 0 1 0
chr17:2385621|2385771 hsa-miR-6728-5p 1 1 0
chr17:2385621|2385771 hsa-miR-6089 1 0 0
chr17:2385621|2385771 hsa-miR-6757-5p 1 1 0
chr17:2385621|2385771 hsa-miR-6746-5p 1 1 0
chr17:2385621|2385771 hsa-miR-7154-3p 0 1 0
chr17:2385621|2385771 hsa-miR-6840-5p 1 0 0
chr17:2385621|2385771 hsa-miR-6721-5p 0 1 0
chr17:2385621|2385771 hsa-miR-6871-5p 0 1 0
chr17:2385621|2385771 hsa-miR-6772-5p 1 0 0
chr17:2385621|2385771 hsa-miR-6732-5p 1 1 0
chr17:2385621|2385771 hsa-miR-2467-3p 1 1 0
chr17:2385621|2385771 hsa-miR-6782-5p 1 0 0
chr17:2385621|2385771 hsa-miR-615-5p 1 0 0
chr17:2385621|2385771 hsa-miR-6763-3p 0 1 0
chr17:2385621|2385771 hsa-miR-4690-5p 1 0 0
chr17:2385621|2385771 hsa-miR-6823-5p 1 0 0
chr17:2385621|2385771 hsa-miR-4787-5p 1 0 0
chr17:2385621|2385771 hsa-miR-149-3p 1 0 0
chr17:2385621|2385771 hsa-miR-3162-5p 1 0 0
chr17:2385621|2385771 hsa-miR-5010-5p 1 1 0
chr17:2385621|2385771 hsa-miR-7112-5p 1 1 0
chr17:2385621|2385771 hsa-miR-5004-5p 0 1 0
chr17:2385621|2385771 hsa-miR-5587-3p 0 1 0
chr17:2385621|2385771 hsa-miR-1233-5p 1 1 0
chr17:2385621|2385771 hsa-miR-1273h-5p 0 1 0
chr17:2385621|2385771 hsa-miR-4763-3p 1 1 0
chr17:2385621|2385771 hsa-miR-6778-5p 1 1 0
chr17:2385621|2385771 hsa-miR-6812-5p 1 0 0
chr17:2385621|2385771 hsa-miR-6816-5p 1 0 0
chr17:2385621|2385771 hsa-miR-6893-5p 0 1 0
chr17:2385621|2385771 hsa-miR-5001-5p 0 1 0
chr17:2385621|2385771 hsa-miR-6752-5p 1 1 0
chr17:2385621|2385771 hsa-miR-6756-5p 1 0 0
chr17:2385621|2385771 hsa-miR-6803-5p 1 0 0
chr17:2385621|2385771 hsa-miR-6813-5p 0 1 0
chr17:2385621|2385771 hsa-miR-7110-5p 1 1 0
chr17:2385621|2385771 hsa-miR-6722-3p 1 0 0
chr17:2385621|2385771 hsa-miR-6779-5p 0 1 0
chr17:2385621|2385771 hsa-miR-6780a-5p 0 1 0
chr17:2385621|2385771 hsa-miR-6808-5p 0 1 0
chr17:2385621|2385771 hsa-miR-7111-5p 1 0 0
chr17:2385621|2385771 hsa-miR-4728-5p 1 1 0
chr17:2385621|2385771 hsa-miR-6836-5p 0 1 0
chr17:2385621|2385771 hsa-miR-10526-3p 0 1 0
chr17:2385621|2385771 hsa-miR-6735-5p 0 1 0
chr17:2385621|2385771 hsa-miR-6738-5p 1 0 0
chr17:2385621|2385771 hsa-miR-6795-5p 1 1 0
chr17:2385621|2385771 hsa-miR-6848-5p 1 0 0
chr17:2385621|2385771 hsa-miR-6887-5p 1 1 0
chr17:2385621|2385771 hsa-miR-6731-5p 1 1 0
chr17:2385621|2385771 hsa-miR-7843-5p 0 1 0
chr17:2385621|2385771 hsa-miR-6791-5p 1 0 0
chr17:2385621|2385771 hsa-miR-6805-3p 0 1 0
chr17:2385621|2385771 hsa-miR-6838-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:2385621|2385771
ORF Type ORF1
Protein Length 30
Nucleotide Length 90
Protein Sequence MPLSSHPLNTLLLPGTLLSGPCPGSCRAAA
Nucleotide Sequence TTGCCTCTGTCCTCCCATCCCCTCAACACCCTGCTTCTCCCGGGGACGCTTTTGAGTGGGCCCTGCCCGGGGAGCTGCAGAGCAGCAGCA
CircID chr17:2385621|2385771
ORF Type ORF2
Protein Length 37
Nucleotide Length 114
Protein Sequence LGPIQNRGPELGLLLLLQPLCLCPPIPSTPCFSRGRF
Nucleotide Sequence CTGGGACCTATACAGAACAGAGGGCCAGAGCTAGGGCTGCTGCTTCTGCTCCAGCCCCTTTGCCTCTGTCCTCCCATCCCCTCAACACCCTGCTTCTCCCGGGGACGCTTTTGA
CircID chr17:2385621|2385771
ORF Type ORF3
Protein Length 26
Nucleotide Length 78
Protein Sequence MGGQRQRGWSRSSSPSSGPLFCIGPR
Nucleotide Sequence ATGGGAGGACAGAGGCAAAGGGGCTGGAGCAGAAGCAGCAGCCCTAGCTCTGGCCCTCTGTTCTGTATAGGTCCCAGG
CircID chr17:2385621|2385771
ORF Type ORF4
Protein Length 43
Nucleotide Length 132
Protein Sequence MQLPGQGPLKSVPGRSRVLRGWEDRGKGAGAEAAALALALCSV
Nucleotide Sequence CTGCAGCTCCCCGGGCAGGGCCCACTCAAAAGCGTCCCCGGGAGAAGCAGGGTGTTGAGGGGATGGGAGGACAGAGGCAAAGGGGCTGGAGCAGAAGCAGCAGCCCTAGCTCTGGCCCTCTGTTCTGTATAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab