CircRNA Information

General Information
circRNA Basic Information
CircID chr17:28344671|28344882
Strand -
CircType exon
Host Gene ENSG00000109079.8;
Algorism CIRI2;
Sequence CCCATGCTGCTGCTGCCTGGGTCTCTGCTCTAGCACCCAGAGGCATGACAGGCCCTGCTCAGAGGTCAGAGGGTCTGGGCAGAGGAGGGACCACATTCCCCTGCCTTGCCCCTGAGCACTTCTGGAGACTGCGTCCTGTCCTATCTGCTCACCATCACCCTTCCTGCCCGACGGAGCTGCTTCTGCTCCCTGGGGCATATGGACTGACCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:28344671|28344882 hsa-miR-15a-5p 0 0 1
chr17:28344671|28344882 hsa-miR-15a-3p 0 0 1
chr17:28344671|28344882 hsa-miR-107 0 0 1
chr17:28344671|28344882 hsa-miR-15b-5p 0 0 1
chr17:28344671|28344882 hsa-miR-15b-3p 0 0 1
chr17:28344671|28344882 hsa-miR-195-5p 0 0 1
chr17:28344671|28344882 hsa-miR-195-3p 0 0 1
chr17:28344671|28344882 hsa-miR-206 0 0 1
chr17:28344671|28344882 hsa-miR-302a-5p 0 0 1
chr17:28344671|28344882 hsa-miR-302a-3p 0 0 1
chr17:28344671|28344882 hsa-miR-302b-5p 0 0 1
chr17:28344671|28344882 hsa-miR-302b-3p 0 0 1
chr17:28344671|28344882 hsa-miR-302c-5p 0 0 1
chr17:28344671|28344882 hsa-miR-302c-3p 0 0 1
chr17:28344671|28344882 hsa-miR-302d-5p 0 0 1
chr17:28344671|28344882 hsa-miR-302d-3p 0 0 1
chr17:28344671|28344882 hsa-miR-372-5p 0 0 1
chr17:28344671|28344882 hsa-miR-372-3p 0 0 1
chr17:28344671|28344882 hsa-miR-373-5p 0 0 1
chr17:28344671|28344882 hsa-miR-373-3p 0 0 1
chr17:28344671|28344882 hsa-miR-326 0 0 1
chr17:28344671|28344882 hsa-miR-424-5p 0 0 1
chr17:28344671|28344882 hsa-miR-424-3p 0 0 1
chr17:28344671|28344882 hsa-miR-497-5p 0 0 1
chr17:28344671|28344882 hsa-miR-497-3p 0 0 1
chr17:28344671|28344882 hsa-miR-520e-5p 0 0 1
chr17:28344671|28344882 hsa-miR-520e-3p 0 0 1
chr17:28344671|28344882 hsa-miR-520b-5p 0 0 1
chr17:28344671|28344882 hsa-miR-520b-3p 0 0 1
chr17:28344671|28344882 hsa-miR-613 0 1 1
chr17:28344671|28344882 hsa-miR-646 0 1 1
chr17:28344671|28344882 hsa-miR-766-5p 0 0 1
chr17:28344671|28344882 hsa-miR-766-3p 0 0 1
chr17:28344671|28344882 hsa-miR-298 0 1 1
chr17:28344671|28344882 hsa-miR-940 0 0 1
chr17:28344671|28344882 hsa-miR-1266-5p 0 0 1
chr17:28344671|28344882 hsa-miR-1266-3p 0 0 1
chr17:28344671|28344882 hsa-miR-302e 0 0 1
chr17:28344671|28344882 hsa-miR-1197 0 0 1
chr17:28344671|28344882 hsa-miR-1207-5p 1 1 1
chr17:28344671|28344882 hsa-miR-324-3p 0 0 1
chr17:28344671|28344882 hsa-miR-330-5p 0 0 1
chr17:28344671|28344882 hsa-miR-520d-3p 0 0 1
chr17:28344671|28344882 hsa-miR-455-3p 0 1 1
chr17:28344671|28344882 hsa-miR-520a-3p 0 0 1
chr17:28344671|28344882 hsa-miR-520c-3p 0 0 1
chr17:28344671|28344882 hsa-miR-103 0 0 1
chr17:28344671|28344882 hsa-miR-16 0 0 1
chr17:28344671|28344882 hsa-miR-1 0 0 1
chr17:28344671|28344882 hsa-miR-608 1 0 0
chr17:28344671|28344882 hsa-miR-612 1 1 0
chr17:28344671|28344882 hsa-miR-3122 1 0 0
chr17:28344671|28344882 hsa-miR-3147 1 1 0
chr17:28344671|28344882 hsa-miR-3154 1 0 0
chr17:28344671|28344882 hsa-miR-4298 1 0 0
chr17:28344671|28344882 hsa-miR-4270 0 1 0
chr17:28344671|28344882 hsa-miR-3921 0 1 0
chr17:28344671|28344882 hsa-miR-3937 0 1 0
chr17:28344671|28344882 hsa-miR-4436a 1 0 0
chr17:28344671|28344882 hsa-miR-4441 0 1 0
chr17:28344671|28344882 hsa-miR-4468 0 1 0
chr17:28344671|28344882 hsa-miR-4476 0 1 0
chr17:28344671|28344882 hsa-miR-4479 1 0 0
chr17:28344671|28344882 hsa-miR-4518 0 1 0
chr17:28344671|28344882 hsa-miR-4660 0 1 0
chr17:28344671|28344882 hsa-miR-4673 0 1 0
chr17:28344671|28344882 hsa-miR-4688 0 1 0
chr17:28344671|28344882 hsa-miR-4692 0 1 0
chr17:28344671|28344882 hsa-miR-4739 1 0 0
chr17:28344671|28344882 hsa-miR-5191 1 1 0
chr17:28344671|28344882 hsa-miR-5193 0 1 0
chr17:28344671|28344882 hsa-miR-6081 0 1 0
chr17:28344671|28344882 hsa-miR-6090 1 0 0
chr17:28344671|28344882 hsa-miR-6132 0 1 0
chr17:28344671|28344882 hsa-miR-6860 1 1 0
chr17:28344671|28344882 hsa-miR-4433b-3p 1 0 0
chr17:28344671|28344882 hsa-miR-504-3p 1 0 0
chr17:28344671|28344882 hsa-miR-4700-3p 0 1 0
chr17:28344671|28344882 hsa-miR-4433a-3p 1 0 0
chr17:28344671|28344882 hsa-miR-215-3p 0 1 0
chr17:28344671|28344882 hsa-miR-4695-5p 1 0 0
chr17:28344671|28344882 hsa-miR-4722-5p 0 1 0
chr17:28344671|28344882 hsa-miR-6741-5p 0 1 0
chr17:28344671|28344882 hsa-miR-6727-5p 1 0 0
chr17:28344671|28344882 hsa-miR-6721-5p 1 1 0
chr17:28344671|28344882 hsa-miR-6776-5p 0 1 0
chr17:28344671|28344882 hsa-miR-6798-5p 0 1 0
chr17:28344671|28344882 hsa-miR-6881-5p 0 1 0
chr17:28344671|28344882 hsa-miR-6782-5p 1 0 0
chr17:28344671|28344882 hsa-miR-6735-3p 0 1 0
chr17:28344671|28344882 hsa-miR-3934-3p 0 1 0
chr17:28344671|28344882 hsa-miR-4640-5p 1 0 0
chr17:28344671|28344882 hsa-miR-6753-5p 1 0 0
chr17:28344671|28344882 hsa-miR-4732-5p 0 1 0
chr17:28344671|28344882 hsa-miR-6749-5p 1 0 0
chr17:28344671|28344882 hsa-miR-4667-3p 0 1 0
chr17:28344671|28344882 hsa-miR-6824-5p 1 0 0
chr17:28344671|28344882 hsa-miR-3162-5p 1 1 0
chr17:28344671|28344882 hsa-miR-6781-5p 1 0 0
chr17:28344671|28344882 hsa-miR-7112-5p 1 0 0
chr17:28344671|28344882 hsa-miR-2276-5p 0 1 0
chr17:28344671|28344882 hsa-miR-4750-5p 1 0 0
chr17:28344671|28344882 hsa-miR-7113-5p 0 1 0
chr17:28344671|28344882 hsa-miR-6792-5p 1 0 0
chr17:28344671|28344882 hsa-miR-5088-3p 0 1 0
chr17:28344671|28344882 hsa-miR-767-3p 0 1 0
chr17:28344671|28344882 hsa-miR-4763-3p 1 1 0
chr17:28344671|28344882 hsa-miR-6812-5p 1 0 0
chr17:28344671|28344882 hsa-miR-6893-5p 0 1 0
chr17:28344671|28344882 hsa-miR-1343-5p 1 0 0
chr17:28344671|28344882 hsa-miR-5001-5p 1 0 0
chr17:28344671|28344882 hsa-miR-6743-5p 1 1 0
chr17:28344671|28344882 hsa-miR-6754-5p 0 1 0
chr17:28344671|28344882 hsa-miR-6756-5p 1 0 0
chr17:28344671|28344882 hsa-miR-6722-3p 1 1 0
chr17:28344671|28344882 hsa-miR-6774-5p 1 0 0
chr17:28344671|28344882 hsa-miR-6797-5p 1 0 0
chr17:28344671|28344882 hsa-miR-6808-5p 1 1 0
chr17:28344671|28344882 hsa-miR-6879-5p 1 1 0
chr17:28344671|28344882 hsa-miR-320a-5p 0 1 0
chr17:28344671|28344882 hsa-miR-1915-3p 0 1 0
chr17:28344671|28344882 hsa-miR-6836-5p 1 0 0
chr17:28344671|28344882 hsa-miR-10396a-5p 1 0 0
chr17:28344671|28344882 hsa-miR-1909-3p 1 1 0
chr17:28344671|28344882 hsa-miR-328-5p 1 0 0
chr17:28344671|28344882 hsa-miR-4632-5p 1 1 0
chr17:28344671|28344882 hsa-miR-6735-5p 0 1 0
chr17:28344671|28344882 hsa-miR-6858-5p 1 0 0
chr17:28344671|28344882 hsa-miR-6883-5p 1 0 0
chr17:28344671|28344882 hsa-miR-4436b-3p 1 1 0
chr17:28344671|28344882 hsa-miR-939-5p 1 0 0
chr17:28344671|28344882 hsa-miR-7843-5p 1 1 0
chr17:28344671|28344882 hsa-miR-6891-5p 1 0 0
chr17:28344671|28344882 hsa-miR-4667-5p 0 1 0
chr17:28344671|28344882 hsa-miR-6753-3p 1 0 0
chr17:28344671|28344882 hsa-miR-6837-5p 1 0 0
chr17:28344671|28344882 hsa-miR-33b-3p 1 0 0
chr17:28344671|28344882 hsa-miR-4653-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:28344671|28344882
ORF Type ORF1
Protein Length 50
Nucleotide Length 153
Protein Sequence MLRGQRVWAEEGPHSPALPLSTSGDCVLSYLLTITLPARRSCFCSLGHMD
Nucleotide Sequence CTGCTCAGAGGTCAGAGGGTCTGGGCAGAGGAGGGACCACATTCCCCTGCCTTGCCCCTGAGCACTTCTGGAGACTGCGTCCTGTCCTATCTGCTCACCATCACCCTTCCTGCCCGACGGAGCTGCTTCTGCTCCCTGGGGCATATGGACTGA
CircID chr17:28344671|28344882
ORF Type ORF2
Protein Length 32
Nucleotide Length 99
Protein Sequence MGLCSSTQRHDRPCSEVRGSGQRRDHIPLPCP
Nucleotide Sequence CTGGGTCTCTGCTCTAGCACCCAGAGGCATGACAGGCCCTGCTCAGAGGTCAGAGGGTCTGGGCAGAGGAGGGACCACATTCCCCTGCCTTGCCCCTGA
CircID chr17:28344671|28344882
ORF Type ORF3
Protein Length 30
Nucleotide Length 90
Protein Sequence METASCPICSPSPFLPDGAASAPWGIWTDP
Nucleotide Sequence CTGGAGACTGCGTCCTGTCCTATCTGCTCACCATCACCCTTCCTGCCCGACGGAGCTGCTTCTGCTCCCTGGGGCATATGGACTGACCCA
CircID chr17:28344671|28344882
ORF Type ORF4
Protein Length 56
Nucleotide Length 168
Protein Sequence MTGPAQRSEGLGRGGTTFPCLAPEHFWRLRPVLSAHHHPSCPTELLLLPGAYGLTH
Nucleotide Sequence ATGACAGGCCCTGCTCAGAGGTCAGAGGGTCTGGGCAGAGGAGGGACCACATTCCCCTGCCTTGCCCCTGAGCACTTCTGGAGACTGCGTCCTGTCCTATCTGCTCACCATCACCCTTCCTGCCCGACGGAGCTGCTTCTGCTCCCTGGGGCATATGGACTGACCCAC
CircID chr17:28344671|28344882
ORF Type ORF5
Protein Length 66
Nucleotide Length 198
Protein Sequence MPQGAEAAPSGRKGDGEQIGQDAVSRSAQGQGRGMWSLLCPDPLTSEQGLSCLWVLEQRPRQQQHG
Nucleotide Sequence ATGCCCCAGGGAGCAGAAGCAGCTCCGTCGGGCAGGAAGGGTGATGGTGAGCAGATAGGACAGGACGCAGTCTCCAGAAGTGCTCAGGGGCAAGGCAGGGGAATGTGGTCCCTCCTCTGCCCAGACCCTCTGACCTCTGAGCAGGGCCTGTCATGCCTCTGGGTGCTAGAGCAGAGACCCAGGCAGCAGCAGCATGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab