CircRNA Information

General Information
circRNA Basic Information
CircID chr17:28574696|28574997
Strand -
CircType exon
Host Gene ENSG00000109107.12;
Algorism CIRI2;
Sequence CTGCTGGCAGATACTGGCATAACGGGCCAGCACGTTGGCGTTCTCCAGAATGGCAAGTGCAGAGGGTGTACGCTCACTGATTTTCAGCACACAGCGCCACTTGGCAAAGTCAGCACCATCCTTCTTGTATTGGGCACAGCGTTCTGAGAGCCCATCCAGCCCTGCAAGCACAGTGCCAACCTCATTACTCTGCCCCTCTTTTACCAGCATCAACTATCTAACACCTCTTTGGTCCTCAAGCCCACCCATCCTATACCTTGAGTGGTGGTTTCTCCATCAGTCCCAGCTAGAGGCACCACACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:28574696|28574997 hsa-miR-96-5p 0 0 1
chr17:28574696|28574997 hsa-miR-96-3p 0 0 1
chr17:28574696|28574997 hsa-miR-381-5p 0 0 1
chr17:28574696|28574997 hsa-miR-381-3p 0 0 1
chr17:28574696|28574997 hsa-miR-583 0 0 1
chr17:28574696|28574997 hsa-miR-636 1 0 1
chr17:28574696|28574997 hsa-miR-1271-5p 0 0 1
chr17:28574696|28574997 hsa-miR-1271-3p 0 0 1
chr17:28574696|28574997 hsa-miR-300 0 0 1
chr17:28574696|28574997 hsa-miR-541-5p 0 0 1
chr17:28574696|28574997 hsa-miR-541-3p 0 0 1
chr17:28574696|28574997 hsa-miR-1202 0 0 1
chr17:28574696|28574997 hsa-miR-1287-5p 0 0 1
chr17:28574696|28574997 hsa-miR-1287-3p 0 0 1
chr17:28574696|28574997 hsa-miR-1293 0 0 1
chr17:28574696|28574997 hsa-miR-1299 0 0 1
chr17:28574696|28574997 hsa-miR-1251-5p 0 0 1
chr17:28574696|28574997 hsa-miR-1251-3p 0 0 1
chr17:28574696|28574997 hsa-miR-1265 0 0 1
chr17:28574696|28574997 hsa-miR-1224-5p 1 1 1
chr17:28574696|28574997 hsa-miR-486-3p 0 0 1
chr17:28574696|28574997 hsa-miR-423-5p 1 1 1
chr17:28574696|28574997 hsa-miR-654-5p 1 1 1
chr17:28574696|28574997 hsa-miR-628-5p 0 0 1
chr17:28574696|28574997 hsa-miR-138 0 0 1
chr17:28574696|28574997 hsa-miR-218 0 0 1
chr17:28574696|28574997 hsa-miR-516b 0 0 1
chr17:28574696|28574997 hsa-miR-449a 1 0 0
chr17:28574696|28574997 hsa-miR-564 1 0 0
chr17:28574696|28574997 hsa-miR-601 1 0 0
chr17:28574696|28574997 hsa-miR-663a 1 0 0
chr17:28574696|28574997 hsa-miR-762 1 0 0
chr17:28574696|28574997 hsa-miR-1294 1 1 0
chr17:28574696|28574997 hsa-miR-2110 0 1 0
chr17:28574696|28574997 hsa-miR-3141 1 0 0
chr17:28574696|28574997 hsa-miR-3197 1 0 0
chr17:28574696|28574997 hsa-miR-4325 0 1 0
chr17:28574696|28574997 hsa-miR-4327 0 1 0
chr17:28574696|28574997 hsa-miR-4289 1 0 0
chr17:28574696|28574997 hsa-miR-3929 1 0 0
chr17:28574696|28574997 hsa-miR-3936 1 0 0
chr17:28574696|28574997 hsa-miR-3945 1 0 0
chr17:28574696|28574997 hsa-miR-4480 0 1 0
chr17:28574696|28574997 hsa-miR-4490 1 1 0
chr17:28574696|28574997 hsa-miR-4492 0 1 0
chr17:28574696|28574997 hsa-miR-4498 1 1 0
chr17:28574696|28574997 hsa-miR-4505 1 0 0
chr17:28574696|28574997 hsa-miR-4506 1 0 0
chr17:28574696|28574997 hsa-miR-2392 1 1 0
chr17:28574696|28574997 hsa-miR-4507 1 0 0
chr17:28574696|28574997 hsa-miR-4508 1 0 0
chr17:28574696|28574997 hsa-miR-1587 1 0 0
chr17:28574696|28574997 hsa-miR-4647 1 0 0
chr17:28574696|28574997 hsa-miR-4651 1 0 0
chr17:28574696|28574997 hsa-miR-4656 1 0 0
chr17:28574696|28574997 hsa-miR-4674 1 1 0
chr17:28574696|28574997 hsa-miR-4688 1 0 0
chr17:28574696|28574997 hsa-miR-4689 1 0 0
chr17:28574696|28574997 hsa-miR-4751 0 1 0
chr17:28574696|28574997 hsa-miR-5090 1 1 0
chr17:28574696|28574997 hsa-miR-5093 1 0 0
chr17:28574696|28574997 hsa-miR-5194 1 0 0
chr17:28574696|28574997 hsa-miR-5787 1 0 0
chr17:28574696|28574997 hsa-miR-6085 1 0 0
chr17:28574696|28574997 hsa-miR-6086 1 0 0
chr17:28574696|28574997 hsa-miR-6124 1 0 0
chr17:28574696|28574997 hsa-miR-6132 1 1 0
chr17:28574696|28574997 hsa-miR-8052 0 1 0
chr17:28574696|28574997 hsa-miR-8082 0 1 0
chr17:28574696|28574997 hsa-miR-8089 1 0 0
chr17:28574696|28574997 hsa-miR-9718 0 1 0
chr17:28574696|28574997 hsa-miR-12118 1 0 0
chr17:28574696|28574997 hsa-miR-432-3p 0 1 0
chr17:28574696|28574997 hsa-miR-6747-5p 1 0 0
chr17:28574696|28574997 hsa-miR-6894-5p 1 0 0
chr17:28574696|28574997 hsa-miR-6510-5p 1 0 0
chr17:28574696|28574997 hsa-miR-6728-5p 1 0 0
chr17:28574696|28574997 hsa-miR-3692-5p 1 0 0
chr17:28574696|28574997 hsa-miR-6757-5p 1 0 0
chr17:28574696|28574997 hsa-miR-6880-5p 1 0 0
chr17:28574696|28574997 hsa-miR-4709-3p 1 0 0
chr17:28574696|28574997 hsa-miR-6730-5p 1 0 0
chr17:28574696|28574997 hsa-miR-7160-5p 1 0 0
chr17:28574696|28574997 hsa-miR-6741-5p 1 0 0
chr17:28574696|28574997 hsa-miR-6759-5p 1 0 0
chr17:28574696|28574997 hsa-miR-6721-5p 1 0 0
chr17:28574696|28574997 hsa-miR-197-5p 1 0 0
chr17:28574696|28574997 hsa-miR-8069 1 0 0
chr17:28574696|28574997 hsa-miR-3180-3p 1 0 0
chr17:28574696|28574997 hsa-miR-6748-5p 1 0 0
chr17:28574696|28574997 hsa-miR-6793-5p 1 0 0
chr17:28574696|28574997 hsa-miR-6782-5p 1 0 0
chr17:28574696|28574997 hsa-miR-1226-5p 1 0 0
chr17:28574696|28574997 hsa-miR-6740-5p 1 0 0
chr17:28574696|28574997 hsa-miR-3944-3p 1 0 0
chr17:28574696|28574997 hsa-miR-1229-5p 1 0 0
chr17:28574696|28574997 hsa-miR-296-3p 1 1 0
chr17:28574696|28574997 hsa-miR-6823-5p 1 0 0
chr17:28574696|28574997 hsa-miR-4743-5p 1 0 0
chr17:28574696|28574997 hsa-miR-202-3p 1 1 0
chr17:28574696|28574997 hsa-miR-3162-5p 1 0 0
chr17:28574696|28574997 hsa-miR-4776-3p 0 1 0
chr17:28574696|28574997 hsa-miR-1250-5p 1 0 0
chr17:28574696|28574997 hsa-miR-744-5p 1 0 0
chr17:28574696|28574997 hsa-miR-2276-5p 0 1 0
chr17:28574696|28574997 hsa-miR-6865-3p 0 1 0
chr17:28574696|28574997 hsa-miR-34a-5p 1 0 0
chr17:28574696|28574997 hsa-miR-3144-5p 1 1 0
chr17:28574696|28574997 hsa-miR-6509-5p 1 0 0
chr17:28574696|28574997 hsa-miR-4727-5p 0 1 0
chr17:28574696|28574997 hsa-miR-3152-3p 1 0 0
chr17:28574696|28574997 hsa-miR-497-3p 0 1 0
chr17:28574696|28574997 hsa-miR-1207-5p 1 0 0
chr17:28574696|28574997 hsa-miR-4763-3p 1 0 0
chr17:28574696|28574997 hsa-miR-6769b-5p 1 1 0
chr17:28574696|28574997 hsa-miR-6816-5p 1 0 0
chr17:28574696|28574997 hsa-miR-6870-5p 1 0 0
chr17:28574696|28574997 hsa-miR-5001-5p 1 0 0
chr17:28574696|28574997 hsa-miR-6743-5p 1 1 0
chr17:28574696|28574997 hsa-miR-6756-5p 1 1 0
chr17:28574696|28574997 hsa-miR-6769a-5p 1 0 0
chr17:28574696|28574997 hsa-miR-6803-5p 1 0 0
chr17:28574696|28574997 hsa-miR-6813-5p 1 0 0
chr17:28574696|28574997 hsa-miR-6842-5p 1 0 0
chr17:28574696|28574997 hsa-miR-6851-5p 1 0 0
chr17:28574696|28574997 hsa-miR-6722-3p 1 0 0
chr17:28574696|28574997 hsa-miR-6779-5p 1 0 0
chr17:28574696|28574997 hsa-miR-6780a-5p 1 0 0
chr17:28574696|28574997 hsa-miR-3620-5p 1 0 0
chr17:28574696|28574997 hsa-miR-5196-5p 1 0 0
chr17:28574696|28574997 hsa-miR-6836-5p 1 0 0
chr17:28574696|28574997 hsa-miR-10396a-5p 1 0 0
chr17:28574696|28574997 hsa-miR-10396b-5p 1 0 0
chr17:28574696|28574997 hsa-miR-10526-3p 1 0 0
chr17:28574696|28574997 hsa-miR-1909-3p 1 0 0
chr17:28574696|28574997 hsa-miR-328-5p 1 0 0
chr17:28574696|28574997 hsa-miR-4685-5p 1 0 0
chr17:28574696|28574997 hsa-miR-4745-5p 1 0 0
chr17:28574696|28574997 hsa-miR-6735-5p 1 0 0
chr17:28574696|28574997 hsa-miR-6738-5p 1 0 0
chr17:28574696|28574997 hsa-miR-6846-5p 1 0 0
chr17:28574696|28574997 hsa-miR-6848-5p 1 0 0
chr17:28574696|28574997 hsa-miR-6858-5p 1 0 0
chr17:28574696|28574997 hsa-miR-6883-5p 1 0 0
chr17:28574696|28574997 hsa-miR-6831-5p 1 0 0
chr17:28574696|28574997 hsa-miR-6885-5p 1 0 0
chr17:28574696|28574997 hsa-miR-3199 0 1 0
chr17:28574696|28574997 hsa-miR-1266-5p 1 0 0
chr17:28574696|28574997 hsa-miR-3940-5p 1 0 0
chr17:28574696|28574997 hsa-miR-6758-5p 1 1 0
chr17:28574696|28574997 hsa-miR-6856-5p 1 1 0
chr17:28574696|28574997 hsa-miR-5008-3p 1 1 0
chr17:28574696|28574997 hsa-miR-1914-3p 1 0 0
chr17:28574696|28574997 hsa-miR-6891-5p 1 0 0
chr17:28574696|28574997 hsa-miR-6766-5p 1 0 0
chr17:28574696|28574997 hsa-miR-6785-5p 1 0 0
chr17:28574696|28574997 hsa-miR-10400-3p 1 1 0
chr17:28574696|28574997 hsa-miR-323b-3p 0 1 0
chr17:28574696|28574997 hsa-miR-449b-5p 1 0 0
chr17:28574696|28574997 hsa-miR-10395-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:28574696|28574997
ORF Type ORF1
Protein Length 48
Nucleotide Length 147
Protein Sequence LLADTGITGQHVGVLQNGKCRGCTLTDFQHTAPLGKVSTILLVLGTAF
Nucleotide Sequence CTGCTGGCAGATACTGGCATAACGGGCCAGCACGTTGGCGTTCTCCAGAATGGCAAGTGCAGAGGGTGTACGCTCACTGATTTTCAGCACACAGCGCCACTTGGCAAAGTCAGCACCATCCTTCTTGTATTGGGCACAGCGTTCTGA
CircID chr17:28574696|28574997
ORF Type ORF2
Protein Length 89
Nucleotide Length 267
Protein Sequence MAFSRMASAEGVRSLIFSTQRHLAKSAPSFLYWAQRSESPSSPASTVPTSLLCPSFTSINYLTPLWSSSPPILYLEWWFLHQSQLEAPH
Nucleotide Sequence TTGGCGTTCTCCAGAATGGCAAGTGCAGAGGGTGTACGCTCACTGATTTTCAGCACACAGCGCCACTTGGCAAAGTCAGCACCATCCTTCTTGTATTGGGCACAGCGTTCTGAGAGCCCATCCAGCCCTGCAAGCACAGTGCCAACCTCATTACTCTGCCCCTCTTTTACCAGCATCAACTATCTAACACCTCTTTGGTCCTCAAGCCCACCCATCCTATACCTTGAGTGGTGGTTTCTCCATCAGTCCCAGCTAGAGGCACCACAC
CircID chr17:28574696|28574997
ORF Type ORF3
Protein Length 25
Nucleotide Length 78
Protein Sequence MRAHPALQAQCQPHYSAPLLPASTI
Nucleotide Sequence CTGAGAGCCCATCCAGCCCTGCAAGCACAGTGCCAACCTCATTACTCTGCCCCTCTTTTACCAGCATCAACTATCTAA
CircID chr17:28574696|28574997
ORF Type ORF4
Protein Length 33
Nucleotide Length 102
Protein Sequence MRLALCLQGWMGSQNAVPNTRRMVLTLPSGAVC
Nucleotide Sequence ATGAGGTTGGCACTGTGCTTGCAGGGCTGGATGGGCTCTCAGAACGCTGTGCCCAATACAAGAAGGATGGTGCTGACTTTGCCAAGTGGCGCTGTGTGCTGA
CircID chr17:28574696|28574997
ORF Type ORF5
Protein Length 71
Nucleotide Length 213
Protein Sequence MMLVKEGQSNEVGTVLAGLDGLSERCAQYKKDGADFAKWRCVLKISERTPSALAILENANVLARYASICQQ
Nucleotide Sequence TTGATGCTGGTAAAAGAGGGGCAGAGTAATGAGGTTGGCACTGTGCTTGCAGGGCTGGATGGGCTCTCAGAACGCTGTGCCCAATACAAGAAGGATGGTGCTGACTTTGCCAAGTGGCGCTGTGTGCTGAAAATCAGTGAGCGTACACCCTCTGCACTTGCCATTCTGGAGAACGCCAACGTGCTGGCCCGTTATGCCAGTATCTGCCAGCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab