CircRNA Information

General Information
circRNA Basic Information
CircID chr17:28616401|28616673
Strand -
CircType exon
Host Gene ENSG00000227543.4;
Algorism CIRI2;
Sequence CTTCTGACCCCAGAACTCCGAGTCAAACCCTGTGCCACACCCTTCCCAGGGCCCAGTGGTACTGCATCATCTGTTGCAATCAGCTGCCGAGGCTTCACCACTGGTATTCCTATGAAAAAGCAAGTGTACCAGCTGTCATCCATCCTCGTTCTGAAGTCTCAGCTGTCTTTGGGGTTGCTACCCTATTCTTCTGGGGCTCCACCATAAAAGTTCTCACCAGTAGTCACCAGTTTGGACTTATCCTCTTCATCACCAACTTCATCATCTTCCACA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:28616401|28616673 hsa-miR-146a-5p 0 0 1
chr17:28616401|28616673 hsa-miR-146a-3p 0 0 1
chr17:28616401|28616673 hsa-miR-376b-5p 0 0 1
chr17:28616401|28616673 hsa-miR-376b-3p 0 0 1
chr17:28616401|28616673 hsa-miR-584-5p 0 0 1
chr17:28616401|28616673 hsa-miR-584-3p 0 0 1
chr17:28616401|28616673 hsa-miR-589-5p 0 0 1
chr17:28616401|28616673 hsa-miR-589-3p 0 0 1
chr17:28616401|28616673 hsa-miR-637 0 0 1
chr17:28616401|28616673 hsa-miR-1291 0 0 1
chr17:28616401|28616673 hsa-miR-1255a 0 0 1
chr17:28616401|28616673 hsa-miR-1272 0 0 1
chr17:28616401|28616673 hsa-miR-1322 0 0 1
chr17:28616401|28616673 hsa-miR-1225-3p 0 0 1
chr17:28616401|28616673 hsa-miR-296-5p 0 0 1
chr17:28616401|28616673 hsa-miR-615-5p 0 0 1
chr17:28616401|28616673 hsa-miR-1207-3p 0 0 1
chr17:28616401|28616673 hsa-miR-146b-5p 0 0 1
chr17:28616401|28616673 hsa-miR-582-3p 0 0 1
chr17:28616401|28616673 hsa-miR-1255b 0 0 1
chr17:28616401|28616673 hsa-miR-220c 0 0 1
chr17:28616401|28616673 hsa-miR-7 0 0 1
chr17:28616401|28616673 hsa-miR-644 0 0 1
chr17:28616401|28616673 hsa-miR-376a 0 0 1
chr17:28616401|28616673 hsa-miR-1185 0 0 1
chr17:28616401|28616673 hsa-miR-1268a 1 0 0
chr17:28616401|28616673 hsa-miR-3131 1 0 0
chr17:28616401|28616673 hsa-miR-3147 0 1 0
chr17:28616401|28616673 hsa-miR-3197 1 0 0
chr17:28616401|28616673 hsa-miR-4281 1 0 0
chr17:28616401|28616673 hsa-miR-3929 1 0 0
chr17:28616401|28616673 hsa-miR-1268b 1 0 0
chr17:28616401|28616673 hsa-miR-4458 1 0 0
chr17:28616401|28616673 hsa-miR-3135b 1 0 0
chr17:28616401|28616673 hsa-miR-4463 1 0 0
chr17:28616401|28616673 hsa-miR-4494 1 0 0
chr17:28616401|28616673 hsa-miR-4502 0 1 0
chr17:28616401|28616673 hsa-miR-2392 0 1 0
chr17:28616401|28616673 hsa-miR-4647 1 0 0
chr17:28616401|28616673 hsa-miR-4651 1 0 0
chr17:28616401|28616673 hsa-miR-4737 1 0 0
chr17:28616401|28616673 hsa-miR-5194 1 1 0
chr17:28616401|28616673 hsa-miR-5683 0 1 0
chr17:28616401|28616673 hsa-miR-6086 1 0 0
chr17:28616401|28616673 hsa-miR-6088 1 0 0
chr17:28616401|28616673 hsa-miR-6127 1 0 0
chr17:28616401|28616673 hsa-miR-6745 1 0 0
chr17:28616401|28616673 hsa-miR-6860 1 0 0
chr17:28616401|28616673 hsa-miR-7150 1 0 0
chr17:28616401|28616673 hsa-miR-8089 1 0 0
chr17:28616401|28616673 hsa-miR-12115 1 0 0
chr17:28616401|28616673 hsa-miR-12132 0 1 0
chr17:28616401|28616673 hsa-miR-134-5p 1 0 0
chr17:28616401|28616673 hsa-miR-150-3p 1 0 0
chr17:28616401|28616673 hsa-miR-370-3p 1 0 0
chr17:28616401|28616673 hsa-miR-6747-5p 1 0 0
chr17:28616401|28616673 hsa-miR-6765-5p 1 0 0
chr17:28616401|28616673 hsa-miR-6861-5p 1 0 0
chr17:28616401|28616673 hsa-miR-6825-5p 1 0 0
chr17:28616401|28616673 hsa-miR-6894-5p 1 1 0
chr17:28616401|28616673 hsa-miR-125a-3p 1 0 0
chr17:28616401|28616673 hsa-miR-6799-5p 1 0 0
chr17:28616401|28616673 hsa-miR-3692-5p 1 0 0
chr17:28616401|28616673 hsa-miR-6804-5p 1 0 0
chr17:28616401|28616673 hsa-miR-6833-5p 0 1 0
chr17:28616401|28616673 hsa-miR-3622a-5p 1 0 0
chr17:28616401|28616673 hsa-miR-6515-5p 1 0 0
chr17:28616401|28616673 hsa-miR-3192-5p 1 0 0
chr17:28616401|28616673 hsa-miR-6880-5p 1 1 0
chr17:28616401|28616673 hsa-miR-7847-3p 1 0 0
chr17:28616401|28616673 hsa-miR-6744-5p 1 1 0
chr17:28616401|28616673 hsa-miR-4709-3p 1 1 0
chr17:28616401|28616673 hsa-miR-6730-5p 1 0 0
chr17:28616401|28616673 hsa-miR-1301-3p 1 0 0
chr17:28616401|28616673 hsa-miR-3605-5p 1 1 0
chr17:28616401|28616673 hsa-miR-6716-5p 1 0 0
chr17:28616401|28616673 hsa-miR-3151-5p 1 0 0
chr17:28616401|28616673 hsa-miR-6732-5p 1 0 0
chr17:28616401|28616673 hsa-miR-3190-3p 1 1 0
chr17:28616401|28616673 hsa-miR-6782-5p 1 0 0
chr17:28616401|28616673 hsa-miR-7855-5p 1 1 0
chr17:28616401|28616673 hsa-miR-6786-5p 1 0 0
chr17:28616401|28616673 hsa-miR-204-3p 1 1 0
chr17:28616401|28616673 hsa-miR-1229-5p 1 0 0
chr17:28616401|28616673 hsa-miR-3691-5p 1 0 0
chr17:28616401|28616673 hsa-miR-885-3p 1 0 0
chr17:28616401|28616673 hsa-miR-6771-5p 1 0 0
chr17:28616401|28616673 hsa-miR-6823-5p 0 1 0
chr17:28616401|28616673 hsa-miR-92b-5p 1 0 0
chr17:28616401|28616673 hsa-miR-149-3p 1 0 0
chr17:28616401|28616673 hsa-miR-6507-5p 0 1 0
chr17:28616401|28616673 hsa-miR-3925-5p 1 0 0
chr17:28616401|28616673 hsa-miR-891a-3p 1 1 0
chr17:28616401|28616673 hsa-miR-6755-5p 0 1 0
chr17:28616401|28616673 hsa-miR-10400-5p 1 0 0
chr17:28616401|28616673 hsa-miR-1233-5p 1 0 0
chr17:28616401|28616673 hsa-miR-4763-3p 1 0 0
chr17:28616401|28616673 hsa-miR-6769b-5p 1 0 0
chr17:28616401|28616673 hsa-miR-6778-5p 1 0 0
chr17:28616401|28616673 hsa-miR-6870-5p 1 0 0
chr17:28616401|28616673 hsa-miR-6737-5p 1 0 0
chr17:28616401|28616673 hsa-miR-6756-5p 1 0 0
chr17:28616401|28616673 hsa-miR-6769a-5p 1 0 0
chr17:28616401|28616673 hsa-miR-10401-5p 1 0 0
chr17:28616401|28616673 hsa-miR-6722-3p 1 0 0
chr17:28616401|28616673 hsa-miR-6751-5p 1 0 0
chr17:28616401|28616673 hsa-miR-6763-5p 1 0 0
chr17:28616401|28616673 hsa-miR-6779-5p 1 0 0
chr17:28616401|28616673 hsa-miR-6788-5p 1 0 0
chr17:28616401|28616673 hsa-miR-6797-5p 1 0 0
chr17:28616401|28616673 hsa-miR-4728-5p 1 1 0
chr17:28616401|28616673 hsa-miR-5196-5p 1 1 0
chr17:28616401|28616673 hsa-miR-6780b-5p 1 1 0
chr17:28616401|28616673 hsa-miR-4701-3p 1 0 0
chr17:28616401|28616673 hsa-miR-6738-5p 1 0 0
chr17:28616401|28616673 hsa-miR-6848-5p 1 0 0
chr17:28616401|28616673 hsa-miR-6858-5p 1 0 0
chr17:28616401|28616673 hsa-miR-6883-5p 1 1 0
chr17:28616401|28616673 hsa-miR-3187-5p 1 0 0
chr17:28616401|28616673 hsa-miR-365b-5p 1 0 0
chr17:28616401|28616673 hsa-miR-3198 0 1 0
chr17:28616401|28616673 hsa-miR-1914-3p 1 0 0
chr17:28616401|28616673 hsa-miR-6736-5p 1 0 0
chr17:28616401|28616673 hsa-miR-4646-5p 1 1 0
chr17:28616401|28616673 hsa-miR-6785-5p 1 0 0
chr17:28616401|28616673 hsa-miR-6724-5p 1 1 0
chr17:28616401|28616673 hsa-miR-6791-5p 1 1 0
chr17:28616401|28616673 hsa-miR-6884-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:28616401|28616673
ORF Type ORF1
Protein Length 67
Nucleotide Length 204
Protein Sequence MTPELRVKPCATPFPGPSGTASSVAISCRGFTTGIPMKKQVYQLSSILVLKSQLSLGLLPYSSGAPP
Nucleotide Sequence CTGACCCCAGAACTCCGAGTCAAACCCTGTGCCACACCCTTCCCAGGGCCCAGTGGTACTGCATCATCTGTTGCAATCAGCTGCCGAGGCTTCACCACTGGTATTCCTATGAAAAAGCAAGTGTACCAGCTGTCATCCATCCTCGTTCTGAAGTCTCAGCTGTCTTTGGGGTTGCTACCCTATTCTTCTGGGGCTCCACCATAA
CircID chr17:28616401|28616673
ORF Type ORF2
Protein Length 81
Nucleotide Length 243
Protein Sequence MCHTLPRAQWYCIICCNQLPRLHHWYSYEKASVPAVIHPRSEVSAVFGVATLFFWGSTIKVLTSSHQFGLILFITNFIIFH
Nucleotide Sequence CTGTGCCACACCCTTCCCAGGGCCCAGTGGTACTGCATCATCTGTTGCAATCAGCTGCCGAGGCTTCACCACTGGTATTCCTATGAAAAAGCAAGTGTACCAGCTGTCATCCATCCTCGTTCTGAAGTCTCAGCTGTCTTTGGGGTTGCTACCCTATTCTTCTGGGGCTCCACCATAAAAGTTCTCACCAGTAGTCACCAGTTTGGACTTATCCTCTTCATCACCAACTTCATCATCTTCCAC
CircID chr17:28616401|28616673
ORF Type ORF3
Protein Length 47
Nucleotide Length 141
Protein Sequence MDDSWYTCFFIGIPVVKPRQLIATDDAVPLGPGKGVAQGLTRSSGVR
Nucleotide Sequence ATGGATGACAGCTGGTACACTTGCTTTTTCATAGGAATACCAGTGGTGAAGCCTCGGCAGCTGATTGCAACAGATGATGCAGTACCACTGGGCCCTGGGAAGGGTGTGGCACAGGGTTTGACTCGGAGTTCTGGGGTCAGA
CircID chr17:28616401|28616673
ORF Type ORF4
Protein Length 36
Nucleotide Length 111
Protein Sequence MVRTFMVEPQKNRVATPKTAETSERGWMTAGTLAFS
Nucleotide Sequence CTGGTGAGAACTTTTATGGTGGAGCCCCAGAAGAATAGGGTAGCAACCCCAAAGACAGCTGAGACTTCAGAACGAGGATGGATGACAGCTGGTACACTTGCTTTTTCATAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab