CircRNA Information

General Information
circRNA Basic Information
CircID chr17:28616441|28616753
Strand -
CircType exon
Host Gene ENSG00000227543.4;
Algorism CIRI2;
Sequence CCTTCCCAGGGCCCAGTGGTACTGCATCATCTGTTGCAATCAGCTGCCGAGGCTTCACCACTGGTATTCCTATGAAAAAGCAAGTGTACCAGCTGTCATCCATCCTCGTTCTGAAGTCTCAGCTGTCTTTGGGGTTGCTACCCTATTCTTCTGGGGCTCCACCATAAAAGTTCTCACCAGTAGTCACCAGTTTGGACTTATCCTCTTCATCACCAACTTCATCATCTTCCACACTTCGGCCAGGAAAGAAAAAGCCCATCATTCTGTGGAAGAACTGGTGTGTCAGCTGGATGGTGAGAGGCACCACATTTAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:28616441|28616753 hsa-miR-146a-5p 0 0 1
chr17:28616441|28616753 hsa-miR-146a-3p 0 0 1
chr17:28616441|28616753 hsa-miR-376b-5p 0 0 1
chr17:28616441|28616753 hsa-miR-376b-3p 0 0 1
chr17:28616441|28616753 hsa-miR-584-5p 0 0 1
chr17:28616441|28616753 hsa-miR-584-3p 0 0 1
chr17:28616441|28616753 hsa-miR-589-5p 0 0 1
chr17:28616441|28616753 hsa-miR-589-3p 0 0 1
chr17:28616441|28616753 hsa-miR-595 0 0 1
chr17:28616441|28616753 hsa-miR-1229-5p 0 0 1
chr17:28616441|28616753 hsa-miR-1229-3p 0 0 1
chr17:28616441|28616753 hsa-miR-1291 0 0 1
chr17:28616441|28616753 hsa-miR-1255a 0 0 1
chr17:28616441|28616753 hsa-miR-1272 0 0 1
chr17:28616441|28616753 hsa-miR-1322 0 0 1
chr17:28616441|28616753 hsa-miR-1225-3p 0 0 1
chr17:28616441|28616753 hsa-miR-296-5p 0 0 1
chr17:28616441|28616753 hsa-miR-1207-3p 0 0 1
chr17:28616441|28616753 hsa-miR-146b-5p 0 0 1
chr17:28616441|28616753 hsa-miR-582-3p 0 0 1
chr17:28616441|28616753 hsa-miR-362-3p 0 0 1
chr17:28616441|28616753 hsa-miR-1255b 0 0 1
chr17:28616441|28616753 hsa-miR-7 0 0 1
chr17:28616441|28616753 hsa-miR-329 0 0 1
chr17:28616441|28616753 hsa-miR-376a 0 0 1
chr17:28616441|28616753 hsa-miR-1185 0 0 1
chr17:28616441|28616753 hsa-miR-3131 1 0 0
chr17:28616441|28616753 hsa-miR-4277 0 1 0
chr17:28616441|28616753 hsa-miR-3911 0 1 0
chr17:28616441|28616753 hsa-miR-3135b 1 0 0
chr17:28616441|28616753 hsa-miR-4463 1 0 0
chr17:28616441|28616753 hsa-miR-4494 1 0 0
chr17:28616441|28616753 hsa-miR-4502 0 1 0
chr17:28616441|28616753 hsa-miR-2392 0 1 0
chr17:28616441|28616753 hsa-miR-1587 1 0 0
chr17:28616441|28616753 hsa-miR-4689 1 0 0
chr17:28616441|28616753 hsa-miR-4710 1 0 0
chr17:28616441|28616753 hsa-miR-4737 1 0 0
chr17:28616441|28616753 hsa-miR-5683 0 1 0
chr17:28616441|28616753 hsa-miR-6127 1 0 0
chr17:28616441|28616753 hsa-miR-6745 1 0 0
chr17:28616441|28616753 hsa-miR-8089 1 0 0
chr17:28616441|28616753 hsa-miR-12115 1 0 0
chr17:28616441|28616753 hsa-miR-12132 0 1 0
chr17:28616441|28616753 hsa-miR-134-5p 1 0 0
chr17:28616441|28616753 hsa-miR-370-3p 1 0 0
chr17:28616441|28616753 hsa-miR-6894-5p 1 1 0
chr17:28616441|28616753 hsa-miR-125a-3p 1 0 0
chr17:28616441|28616753 hsa-miR-3692-5p 1 0 0
chr17:28616441|28616753 hsa-miR-6833-5p 1 1 0
chr17:28616441|28616753 hsa-miR-6757-5p 1 0 0
chr17:28616441|28616753 hsa-miR-6880-5p 1 1 0
chr17:28616441|28616753 hsa-miR-7847-3p 1 0 0
chr17:28616441|28616753 hsa-miR-6744-5p 1 1 0
chr17:28616441|28616753 hsa-miR-4709-3p 1 1 0
chr17:28616441|28616753 hsa-miR-145-5p 0 1 0
chr17:28616441|28616753 hsa-miR-3605-5p 1 1 0
chr17:28616441|28616753 hsa-miR-3190-3p 0 1 0
chr17:28616441|28616753 hsa-miR-7855-5p 1 1 0
chr17:28616441|28616753 hsa-miR-6786-5p 1 0 0
chr17:28616441|28616753 hsa-miR-204-3p 0 1 0
chr17:28616441|28616753 hsa-miR-885-3p 1 0 0
chr17:28616441|28616753 hsa-miR-3677-3p 1 0 0
chr17:28616441|28616753 hsa-miR-6507-5p 0 1 0
chr17:28616441|28616753 hsa-miR-3925-5p 1 0 0
chr17:28616441|28616753 hsa-miR-6877-5p 1 1 0
chr17:28616441|28616753 hsa-miR-6730-3p 0 1 0
chr17:28616441|28616753 hsa-miR-6755-5p 0 1 0
chr17:28616441|28616753 hsa-miR-5586-5p 0 1 0
chr17:28616441|28616753 hsa-miR-10400-5p 1 0 0
chr17:28616441|28616753 hsa-miR-6769b-5p 1 0 0
chr17:28616441|28616753 hsa-miR-6737-5p 1 0 0
chr17:28616441|28616753 hsa-miR-6756-5p 1 0 0
chr17:28616441|28616753 hsa-miR-6769a-5p 1 0 0
chr17:28616441|28616753 hsa-miR-6751-5p 1 0 0
chr17:28616441|28616753 hsa-miR-6788-5p 1 0 0
chr17:28616441|28616753 hsa-miR-6797-5p 1 0 0
chr17:28616441|28616753 hsa-miR-3620-5p 1 0 0
chr17:28616441|28616753 hsa-miR-6848-5p 1 0 0
chr17:28616441|28616753 hsa-miR-6858-5p 1 0 0
chr17:28616441|28616753 hsa-miR-365b-5p 1 0 0
chr17:28616441|28616753 hsa-miR-3198 0 1 0
chr17:28616441|28616753 hsa-miR-6736-5p 1 0 0
chr17:28616441|28616753 hsa-miR-6724-5p 0 1 0
chr17:28616441|28616753 hsa-miR-6511a-3p 0 1 0
chr17:28616441|28616753 hsa-miR-10400-3p 1 0 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:28616441|28616753
ORF Type ORF1
Protein Length 90
Nucleotide Length 270
Protein Sequence MPRLHHWYSYEKASVPAVIHPRSEVSAVFGVATLFFWGSTIKVLTSSHQFGLILFITNFIIFHTSARKEKAHHSVEELVCQLDGERHHIY
Nucleotide Sequence CTGCCGAGGCTTCACCACTGGTATTCCTATGAAAAAGCAAGTGTACCAGCTGTCATCCATCCTCGTTCTGAAGTCTCAGCTGTCTTTGGGGTTGCTACCCTATTCTTCTGGGGCTCCACCATAAAAGTTCTCACCAGTAGTCACCAGTTTGGACTTATCCTCTTCATCACCAACTTCATCATCTTCCACACTTCGGCCAGGAAAGAAAAAGCCCATCATTCTGTGGAAGAACTGGTGTGTCAGCTGGATGGTGAGAGGCACCACATTTAC
CircID chr17:28616441|28616753
ORF Type ORF2
Protein Length 31
Nucleotide Length 96
Protein Sequence MKKQVYQLSSILVLKSQLSLGLLPYSSGAPP
Nucleotide Sequence ATGAAAAAGCAAGTGTACCAGCTGTCATCCATCCTCGTTCTGAAGTCTCAGCTGTCTTTGGGGTTGCTACCCTATTCTTCTGGGGCTCCACCATAA
CircID chr17:28616441|28616753
ORF Type ORF3
Protein Length 40
Nucleotide Length 120
Protein Sequence MDLSSSSPTSSSSTLRPGKKKPIILWKNWCVSWMVRGTTF
Nucleotide Sequence TTGGACTTATCCTCTTCATCACCAACTTCATCATCTTCCACACTTCGGCCAGGAAAGAAAAAGCCCATCATTCTGTGGAAGAACTGGTGTGTCAGCTGGATGGTGAGAGGCACCACATTT
CircID chr17:28616441|28616753
ORF Type ORF4
Protein Length 47
Nucleotide Length 144
Protein Sequence MTHQFFHRMMGFFFPGRSVEDDEVGDEEDKSKLVTTGENFYGGAPEE
Nucleotide Sequence CTGACACACCAGTTCTTCCACAGAATGATGGGCTTTTTCTTTCCTGGCCGAAGTGTGGAAGATGATGAAGTTGGTGATGAAGAGGATAAGTCCAAACTGGTGACTACTGGTGAGAACTTTTATGGTGGAGCCCCAGAAGAATAG
CircID chr17:28616441|28616753
ORF Type ORF5
Protein Length 34
Nucleotide Length 102
Protein Sequence MDDSWYTCFFIGIPVVKPRQLIATDDAVPLGPGK
Nucleotide Sequence ATGGATGACAGCTGGTACACTTGCTTTTTCATAGGAATACCAGTGGTGAAGCCTCGGCAGCTGATTGCAACAGATGATGCAGTACCACTGGGCCCTGGGAAG
CircID chr17:28616441|28616753
ORF Type ORF6
Protein Length 36
Nucleotide Length 111
Protein Sequence MVRTFMVEPQKNRVATPKTAETSERGWMTAGTLAFS
Nucleotide Sequence CTGGTGAGAACTTTTATGGTGGAGCCCCAGAAGAATAGGGTAGCAACCCCAAAGACAGCTGAGACTTCAGAACGAGGATGGATGACAGCTGGTACACTTGCTTTTTCATAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab