CircRNA Information

General Information
circRNA Basic Information
CircID chr17:28638268|28638559
Strand +
CircType exon
Host Gene ENSG00000007202.13;
Algorism CIRI2;
Sequence CACCTTTTGCCTTGGGATTCAATTCTATCTCTCTGGGTAAGGCTCTCAGATGGAATAGGAACAAGAATCTGTCCGTTAGTGGAGCTAGGCCCAATTGATGGCCACAGTGGCTCCATGCAATCCCTCTTTCTCACCTTTGTTCAGATTACCAGCACCTCAGGCCACAAAGCATCCATCAGCGGGGCGTCCTAACTGTGGACCACCTCTGCTGGCGTGTGGGCAGTGACTCCCACATTCAGCGGGCGCCACACCCACCCAATATGCATGTTTGGGGTGAGGCACTTGTTCTGGA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:28638268|28638559 hsa-miR-191-5p 0 0 1
chr17:28638268|28638559 hsa-miR-191-3p 0 0 1
chr17:28638268|28638559 hsa-miR-448 0 0 1
chr17:28638268|28638559 hsa-miR-519e-5p 0 0 1
chr17:28638268|28638559 hsa-miR-519e-3p 0 0 1
chr17:28638268|28638559 hsa-miR-539-5p 0 0 1
chr17:28638268|28638559 hsa-miR-539-3p 0 0 1
chr17:28638268|28638559 hsa-miR-578 0 0 1
chr17:28638268|28638559 hsa-miR-583 0 0 1
chr17:28638268|28638559 hsa-miR-609 0 0 1
chr17:28638268|28638559 hsa-miR-922 0 1 1
chr17:28638268|28638559 hsa-miR-663b 0 0 1
chr17:28638268|28638559 hsa-miR-1293 0 0 1
chr17:28638268|28638559 hsa-miR-1258 0 0 1
chr17:28638268|28638559 hsa-miR-1262 0 0 1
chr17:28638268|28638559 hsa-miR-1279 0 0 1
chr17:28638268|28638559 hsa-miR-299-3p 0 0 1
chr17:28638268|28638559 hsa-miR-566 0 0 1
chr17:28638268|28638559 hsa-miR-337-3p 0 0 1
chr17:28638268|28638559 hsa-miR-515-3p 0 0 1
chr17:28638268|28638559 hsa-miR-323-5p 0 0 1
chr17:28638268|28638559 hsa-miR-644 0 0 1
chr17:28638268|28638559 hsa-miR-138 0 0 1
chr17:28638268|28638559 hsa-miR-608 1 1 0
chr17:28638268|28638559 hsa-miR-638 1 0 0
chr17:28638268|28638559 hsa-miR-1538 1 0 0
chr17:28638268|28638559 hsa-miR-544b 0 1 0
chr17:28638268|28638559 hsa-miR-3165 1 1 0
chr17:28638268|28638559 hsa-miR-4257 1 1 0
chr17:28638268|28638559 hsa-miR-4252 0 1 0
chr17:28638268|28638559 hsa-miR-3652 1 0 0
chr17:28638268|28638559 hsa-miR-4539 1 0 0
chr17:28638268|28638559 hsa-miR-4656 1 0 0
chr17:28638268|28638559 hsa-miR-5698 1 0 0
chr17:28638268|28638559 hsa-miR-8075 1 1 0
chr17:28638268|28638559 hsa-miR-9899 1 0 0
chr17:28638268|28638559 hsa-miR-12119 0 1 0
chr17:28638268|28638559 hsa-miR-138-5p 1 1 0
chr17:28638268|28638559 hsa-miR-135a-3p 1 0 0
chr17:28638268|28638559 hsa-miR-323a-5p 0 1 0
chr17:28638268|28638559 hsa-miR-6836-3p 1 0 0
chr17:28638268|28638559 hsa-miR-671-5p 1 0 0
chr17:28638268|28638559 hsa-miR-133a-5p 1 0 0
chr17:28638268|28638559 hsa-miR-125a-3p 1 0 0
chr17:28638268|28638559 hsa-miR-6873-5p 0 1 0
chr17:28638268|28638559 hsa-miR-6730-5p 1 0 0
chr17:28638268|28638559 hsa-miR-6741-5p 1 0 0
chr17:28638268|28638559 hsa-miR-7108-5p 0 1 0
chr17:28638268|28638559 hsa-miR-6798-5p 1 0 0
chr17:28638268|28638559 hsa-miR-4733-5p 0 1 0
chr17:28638268|28638559 hsa-miR-4707-3p 1 0 0
chr17:28638268|28638559 hsa-miR-4638-3p 1 0 0
chr17:28638268|28638559 hsa-miR-6786-3p 0 1 0
chr17:28638268|28638559 hsa-miR-525-5p 0 1 0
chr17:28638268|28638559 hsa-miR-6890-3p 0 1 0
chr17:28638268|28638559 hsa-miR-589-3p 0 1 0
chr17:28638268|28638559 hsa-miR-1233-5p 0 1 0
chr17:28638268|28638559 hsa-miR-6769b-5p 0 1 0
chr17:28638268|28638559 hsa-miR-6812-5p 1 0 0
chr17:28638268|28638559 hsa-miR-6870-5p 1 0 0
chr17:28638268|28638559 hsa-miR-6726-5p 1 0 0
chr17:28638268|28638559 hsa-miR-6756-5p 1 1 0
chr17:28638268|28638559 hsa-miR-6769a-5p 1 1 0
chr17:28638268|28638559 hsa-miR-6819-5p 1 0 0
chr17:28638268|28638559 hsa-miR-1249-5p 1 0 0
chr17:28638268|28638559 hsa-miR-675-5p 1 0 0
chr17:28638268|28638559 hsa-miR-6848-5p 1 0 0
chr17:28638268|28638559 hsa-miR-939-5p 1 0 0
chr17:28638268|28638559 hsa-miR-3198 1 0 0
chr17:28638268|28638559 hsa-miR-6856-5p 1 0 0
chr17:28638268|28638559 hsa-miR-6736-5p 1 0 0
chr17:28638268|28638559 hsa-miR-6766-5p 0 1 0
chr17:28638268|28638559 hsa-miR-6791-5p 1 0 0
chr17:28638268|28638559 hsa-miR-342-5p 1 0 0
chr17:28638268|28638559 hsa-miR-6784-3p 0 1 0
chr17:28638268|28638559 hsa-miR-383-5p 1 0 0
chr17:28638268|28638559 hsa-miR-1912-3p 0 1 0
chr17:28638268|28638559 hsa-miR-520a-3p 0 1 0
chr17:28638268|28638559 hsa-miR-519d-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


circRNA Open Reading Frame (ORF)
CircID chr17:28638268|28638559
ORF Type ORF1
Protein Length 61
Nucleotide Length 186
Protein Sequence MPWDSILSLWVRLSDGIGTRICPLVELGPIDGHSGSMQSLFLTFVQITSTSGHKASISGAS
Nucleotide Sequence TTGCCTTGGGATTCAATTCTATCTCTCTGGGTAAGGCTCTCAGATGGAATAGGAACAAGAATCTGTCCGTTAGTGGAGCTAGGCCCAATTGATGGCCACAGTGGCTCCATGCAATCCCTCTTTCTCACCTTTGTTCAGATTACCAGCACCTCAGGCCACAAAGCATCCATCAGCGGGGCGTCCTAA

CircID chr17:28638268|28638559
ORF Type ORF2
Protein Length 33
Nucleotide Length 99
Protein Sequence MWTTSAGVWAVTPTFSGRHTHPICMFGVRHLFW
Nucleotide Sequence CTGTGGACCACCTCTGCTGGCGTGTGGGCAGTGACTCCCACATTCAGCGGGCGCCACACCCACCCAATATGCATGTTTGGGGTGAGGCACTTGTTCTGG

CircID chr17:28638268|28638559
ORF Type ORF3
Protein Length 43
Nucleotide Length 132
Protein Sequence MMATVAPCNPSFSPLFRLPAPQATKHPSAGRPNCGPPLLACGQ
Nucleotide Sequence TTGATGGCCACAGTGGCTCCATGCAATCCCTCTTTCTCACCTTTGTTCAGATTACCAGCACCTCAGGCCACAAAGCATCCATCAGCGGGGCGTCCTAACTGTGGACCACCTCTGCTGGCGTGTGGGCAGTGA

CircID chr17:28638268|28638559
ORF Type ORF4
Protein Length 28
Nucleotide Length 87
Protein Sequence MGFNSISLGKALRWNRNKNLSVSGARPN
Nucleotide Sequence TTGGGATTCAATTCTATCTCTCTGGGTAAGGCTCTCAGATGGAATAGGAACAAGAATCTGTCCGTTAGTGGAGCTAGGCCCAATTGA

CircID chr17:28638268|28638559
ORF Type ORF5
Protein Length 31
Nucleotide Length 93
Protein Sequence MGLAPLTDRFLFLFHLRALPREIELNPKAKG
Nucleotide Sequence TTGGGCCTAGCTCCACTAACGGACAGATTCTTGTTCCTATTCCATCTGAGAGCCTTACCCAGAGAGATAGAATTGAATCCCAAGGCAAAAGGT

CircID chr17:28638268|28638559
ORF Type ORF6
Protein Length 25
Nucleotide Length 78
Protein Sequence MHIGWVWRPLNVGVTAHTPAEVVHS
Nucleotide Sequence ATGCATATTGGGTGGGTGTGGCGCCCGCTGAATGTGGGAGTCACTGCCCACACGCCAGCAGAGGTGGTCCACAGTTAG

CircID chr17:28638268|28638559
ORF Type ORF7
Protein Length 38
Nucleotide Length 114
Protein Sequence MEPLWPSIGPSSTNGQILVPIPSESLTQRDRIESQGKR
Nucleotide Sequence ATGGAGCCACTGTGGCCATCAATTGGGCCTAGCTCCACTAACGGACAGATTCTTGTTCCTATTCCATCTGAGAGCCTTACCCAGAGAGATAGAATTGAATCCCAAGGCAAAAGG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites