CircRNA Information

General Information
circRNA Basic Information
CircID chr17:28655287|28655431
Strand -
CircType exon
Host Gene ENSG00000132581.8;
Algorism CIRI2;
Sequence CTGGTTTCCAGAAAGAGGTGAAGTGAAGTGGTGACTATGGAGGTTTCGGCCAGTGTTGACATGTGTCAGCCGGATGGGCTGGCCACACTTGATGGGGGTTCCCCTCTCACACACTGTGGCACTCTTCCCCCGTATCCTCCAGTAA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:28655287|28655431 hsa-miR-197-5p 0 0 1
chr17:28655287|28655431 hsa-miR-197-3p 0 0 1
chr17:28655287|28655431 hsa-miR-141-5p 0 0 1
chr17:28655287|28655431 hsa-miR-141-3p 0 0 1
chr17:28655287|28655431 hsa-miR-200a-5p 0 0 1
chr17:28655287|28655431 hsa-miR-200a-3p 0 0 1
chr17:28655287|28655431 hsa-miR-412-5p 0 0 1
chr17:28655287|28655431 hsa-miR-412-3p 0 0 1
chr17:28655287|28655431 hsa-miR-193b-5p 0 0 1
chr17:28655287|28655431 hsa-miR-193b-3p 0 0 1
chr17:28655287|28655431 hsa-miR-505-5p 0 0 1
chr17:28655287|28655431 hsa-miR-505-3p 0 0 1
chr17:28655287|28655431 hsa-miR-595 1 1 1
chr17:28655287|28655431 hsa-miR-625-5p 0 0 1
chr17:28655287|28655431 hsa-miR-625-3p 0 0 1
chr17:28655287|28655431 hsa-miR-765 1 0 1
chr17:28655287|28655431 hsa-miR-1227-5p 0 0 1
chr17:28655287|28655431 hsa-miR-1227-3p 0 0 1
chr17:28655287|28655431 hsa-miR-663b 0 0 1
chr17:28655287|28655431 hsa-miR-1299 0 0 1
chr17:28655287|28655431 hsa-miR-1243 0 0 1
chr17:28655287|28655431 hsa-miR-875-3p 0 0 1
chr17:28655287|28655431 hsa-miR-193a-3p 0 1 1
chr17:28655287|28655431 hsa-miR-220b 0 0 1
chr17:28655287|28655431 hsa-miR-128 0 0 1
chr17:28655287|28655431 hsa-miR-644 0 0 1
chr17:28655287|28655431 hsa-miR-516b 0 0 1
chr17:28655287|28655431 hsa-miR-1185 0 0 1
chr17:28655287|28655431 hsa-miR-637 1 0 0
chr17:28655287|28655431 hsa-miR-935 1 0 0
chr17:28655287|28655431 hsa-miR-1183 1 0 0
chr17:28655287|28655431 hsa-miR-3175 1 0 0
chr17:28655287|28655431 hsa-miR-3652 1 0 0
chr17:28655287|28655431 hsa-miR-4430 1 0 0
chr17:28655287|28655431 hsa-miR-3135b 1 0 0
chr17:28655287|28655431 hsa-miR-2392 1 0 0
chr17:28655287|28655431 hsa-miR-4534 1 0 0
chr17:28655287|28655431 hsa-miR-4739 1 0 0
chr17:28655287|28655431 hsa-miR-5685 0 1 0
chr17:28655287|28655431 hsa-miR-6894-5p 1 1 0
chr17:28655287|28655431 hsa-miR-6515-5p 1 0 0
chr17:28655287|28655431 hsa-miR-6880-5p 1 0 0
chr17:28655287|28655431 hsa-miR-7847-3p 1 0 0
chr17:28655287|28655431 hsa-miR-6867-5p 0 1 0
chr17:28655287|28655431 hsa-miR-4722-5p 1 0 0
chr17:28655287|28655431 hsa-miR-4474-3p 0 1 0
chr17:28655287|28655431 hsa-miR-7108-5p 0 1 0
chr17:28655287|28655431 hsa-miR-6798-5p 1 0 0
chr17:28655287|28655431 hsa-miR-3194-5p 0 1 0
chr17:28655287|28655431 hsa-miR-1909-5p 1 0 0
chr17:28655287|28655431 hsa-miR-6757-3p 0 1 0
chr17:28655287|28655431 hsa-miR-1225-5p 1 0 0
chr17:28655287|28655431 hsa-miR-6513-3p 0 1 0
chr17:28655287|28655431 hsa-miR-6837-3p 0 1 0
chr17:28655287|28655431 hsa-miR-5589-3p 0 1 0
chr17:28655287|28655431 hsa-miR-6787-5p 1 0 0
chr17:28655287|28655431 hsa-miR-6870-5p 1 0 0
chr17:28655287|28655431 hsa-miR-6769a-5p 1 0 0
chr17:28655287|28655431 hsa-miR-6797-5p 1 0 0
chr17:28655287|28655431 hsa-miR-6754-3p 0 1 0
chr17:28655287|28655431 hsa-miR-6780b-5p 0 1 0
chr17:28655287|28655431 hsa-miR-4725-3p 0 1 0
chr17:28655287|28655431 hsa-miR-6883-5p 1 0 0
chr17:28655287|28655431 hsa-miR-3085-5p 1 0 0
chr17:28655287|28655431 hsa-miR-4665-5p 1 0 0
chr17:28655287|28655431 hsa-miR-3679-5p 1 1 0
chr17:28655287|28655431 hsa-miR-33b-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:28655287|28655431
ORF Type ORF1
Protein Length 36
Nucleotide Length 108
Protein Sequence MEVSASVDMCQPDGLATLDGGSPLTHCGTLPPYPPV
Nucleotide Sequence ATGGAGGTTTCGGCCAGTGTTGACATGTGTCAGCCGGATGGGCTGGCCACACTTGATGGGGGTTCCCCTCTCACACACTGTGGCACTCTTCCCCCGTATCCTCCAGTA
CircID chr17:28655287|28655431
ORF Type ORF2
Protein Length 29
Nucleotide Length 90
Protein Sequence MTCVSRMGWPHLMGVPLSHTVALFPRILQ
Nucleotide Sequence TTGACATGTGTCAGCCGGATGGGCTGGCCACACTTGATGGGGGTTCCCCTCTCACACACTGTGGCACTCTTCCCCCGTATCCTCCAGTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab