CircRNA Information

General Information
circRNA Basic Information
CircID chr17:28675088|28675485
Strand +
CircType exon
Host Gene ENSG00000109111.13;
Algorism CIRI2;
Sequence GCGTCTGTGTATCCAGGAAGCTTTTTCCGCCACTTAGGTTTTTTCAGAGGCTGTCCATCATCATCCACAATGAAGTCGTCAATATCTGGGTAGGAAAAGGATGGGTTGGGGCTCAGAGTCAGGGGCTGAGCCAGGACTAAATTGCTTTGGTTCCTACTATGTGAGTGGCCAGTGAGCAACAGAGAAGGGAAGCTCCTGAAAAGGAACTTCTTTGTGTCAAATGCTGGGGGATGTAGCTAAAGAATGGTTTCCATCCTGTTCCCATGGGCCAGGAAATCCCAATACCCATCCAAACACTGGCTTCCCTGCCCAATATAACATACCTGACTCCTCATCATCTTCTTCCTCCTCCTCTGGAGGAGCCATGGGGGCCTCCATGGCCTCCTGCCCTTCTTCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:28675088|28675485 hsa-miR-204-5p 0 0 1
chr17:28675088|28675485 hsa-miR-204-3p 0 0 1
chr17:28675088|28675485 hsa-miR-211-5p 0 0 1
chr17:28675088|28675485 hsa-miR-211-3p 0 0 1
chr17:28675088|28675485 hsa-miR-221-5p 0 0 1
chr17:28675088|28675485 hsa-miR-221-3p 0 0 1
chr17:28675088|28675485 hsa-miR-222-5p 0 0 1
chr17:28675088|28675485 hsa-miR-222-3p 0 0 1
chr17:28675088|28675485 hsa-miR-149-5p 0 0 1
chr17:28675088|28675485 hsa-miR-149-3p 0 0 1
chr17:28675088|28675485 hsa-miR-345-5p 0 0 1
chr17:28675088|28675485 hsa-miR-345-3p 0 0 1
chr17:28675088|28675485 hsa-miR-384 -7 0 1
chr17:28675088|28675485 hsa-miR-193b-5p 0 0 1
chr17:28675088|28675485 hsa-miR-193b-3p 0 0 1
chr17:28675088|28675485 hsa-miR-567 -6 0 1
chr17:28675088|28675485 hsa-miR-575 -14 0 1
chr17:28675088|28675485 hsa-miR-588 -4 0 1
chr17:28675088|28675485 hsa-miR-623 -1 0 1
chr17:28675088|28675485 hsa-miR-650 -10 0 1
chr17:28675088|28675485 hsa-miR-765 -24 1 1
chr17:28675088|28675485 hsa-miR-708-5p 0 0 1
chr17:28675088|28675485 hsa-miR-708-3p 0 0 1
chr17:28675088|28675485 hsa-miR-942-5p 0 0 1
chr17:28675088|28675485 hsa-miR-942-3p 0 0 1
chr17:28675088|28675485 hsa-miR-1178-5p 0 0 1
chr17:28675088|28675485 hsa-miR-1178-3p 0 0 1
chr17:28675088|28675485 hsa-miR-1255a -3 0 1
chr17:28675088|28675485 hsa-miR-1267 0 0 1
chr17:28675088|28675485 hsa-miR-1272 -19 1 1
chr17:28675088|28675485 hsa-miR-1292-5p 0 0 1
chr17:28675088|28675485 hsa-miR-1292-3p 0 0 1
chr17:28675088|28675485 hsa-miR-671-5p -17 0 1
chr17:28675088|28675485 hsa-miR-1225-3p -13 0 1
chr17:28675088|28675485 hsa-miR-199a-5p -11 0 1
chr17:28675088|28675485 hsa-miR-525-5p -5 0 1
chr17:28675088|28675485 hsa-miR-330-3p -1 0 1
chr17:28675088|28675485 hsa-miR-361-3p -3 1 1
chr17:28675088|28675485 hsa-miR-501-5p -10 1 1
chr17:28675088|28675485 hsa-miR-28-5p -1 1 1
chr17:28675088|28675485 hsa-miR-199b-5p -11 0 1
chr17:28675088|28675485 hsa-miR-338-3p 0 0 1
chr17:28675088|28675485 hsa-miR-1207-5p -24 1 1
chr17:28675088|28675485 hsa-miR-520a-5p -5 1 1
chr17:28675088|28675485 hsa-miR-769-3p -13 0 1
chr17:28675088|28675485 hsa-miR-450b-3p -4 0 1
chr17:28675088|28675485 hsa-miR-876-5p 0 0 1
chr17:28675088|28675485 hsa-miR-193a-3p -4 1 1
chr17:28675088|28675485 hsa-miR-516a-3p -2 0 1
chr17:28675088|28675485 hsa-miR-548d-3p -1 0 1
chr17:28675088|28675485 hsa-miR-1233 0 0 1
chr17:28675088|28675485 hsa-miR-1255b 0 0 1
chr17:28675088|28675485 hsa-miR-514 0 0 1
chr17:28675088|28675485 hsa-miR-24 0 0 1
chr17:28675088|28675485 hsa-miR-554 -16 1 0
chr17:28675088|28675485 hsa-miR-3147 -21 1 0
chr17:28675088|28675485 hsa-miR-3154 -17 1 0
chr17:28675088|28675485 hsa-miR-3185 -15 1 0
chr17:28675088|28675485 hsa-miR-3685 -15 1 0
chr17:28675088|28675485 hsa-miR-3921 -7 1 0
chr17:28675088|28675485 hsa-miR-4540 -4 1 0
chr17:28675088|28675485 hsa-miR-4689 -23 1 0
chr17:28675088|28675485 hsa-miR-4739 -22 1 0
chr17:28675088|28675485 hsa-miR-4780 -10 1 0
chr17:28675088|28675485 hsa-miR-8065 -9 1 0
chr17:28675088|28675485 hsa-miR-9500 -11 1 0
chr17:28675088|28675485 hsa-miR-1843 2 1 0
chr17:28675088|28675485 hsa-miR-7106-5p -17 1 0
chr17:28675088|28675485 hsa-miR-4695-5p -18 1 0
chr17:28675088|28675485 hsa-miR-4722-5p -14 1 0
chr17:28675088|28675485 hsa-miR-6721-5p -18 1 0
chr17:28675088|28675485 hsa-miR-5008-5p -6 1 0
chr17:28675088|28675485 hsa-miR-6772-3p -20 1 0
chr17:28675088|28675485 hsa-miR-4786-3p -18 1 0
chr17:28675088|28675485 hsa-miR-3691-5p -19 1 0
chr17:28675088|28675485 hsa-miR-488-5p -12 1 0
chr17:28675088|28675485 hsa-miR-6847-5p -13 1 0
chr17:28675088|28675485 hsa-miR-6769a-3p -11 1 0
chr17:28675088|28675485 hsa-miR-3190-5p -17 1 0
chr17:28675088|28675485 hsa-miR-4798-3p -10 1 0
chr17:28675088|28675485 hsa-miR-6793-3p -10 1 0
chr17:28675088|28675485 hsa-miR-6513-5p -9 1 0
chr17:28675088|28675485 hsa-miR-503-3p -12 1 0
chr17:28675088|28675485 hsa-miR-7113-5p 14 1 0
chr17:28675088|28675485 hsa-miR-5089-5p -6 1 0
chr17:28675088|28675485 hsa-miR-6838-3p -3 1 0
chr17:28675088|28675485 hsa-miR-6789-3p 0 1 0
chr17:28675088|28675485 hsa-miR-4802-5p 6 1 0
chr17:28675088|28675485 hsa-miR-4714-5p -5 1 0
chr17:28675088|28675485 hsa-miR-367-5p -11 1 0
chr17:28675088|28675485 hsa-miR-4763-3p -25 1 0
chr17:28675088|28675485 hsa-miR-6754-5p -24 1 0
chr17:28675088|28675485 hsa-miR-11181-3p -22 1 0
chr17:28675088|28675485 hsa-miR-1249-5p -22 1 0
chr17:28675088|28675485 hsa-miR-6774-5p -17 1 0
chr17:28675088|28675485 hsa-miR-6879-5p -23 1 0
chr17:28675088|28675485 hsa-miR-7111-5p -20 1 0
chr17:28675088|28675485 hsa-miR-4632-5p -19 1 0
chr17:28675088|28675485 hsa-miR-6735-5p -12 1 0
chr17:28675088|28675485 hsa-miR-4436b-3p -17 1 0
chr17:28675088|28675485 hsa-miR-1199-5p -11 1 0
chr17:28675088|28675485 hsa-miR-6877-3p -13 1 0
chr17:28675088|28675485 hsa-miR-6762-5p -13 1 0
chr17:28675088|28675485 hsa-miR-10392-3p -15 1 0
chr17:28675088|28675485 hsa-miR-6751-3p -10 1 0
chr17:28675088|28675485 hsa-miR-4701-5p -6 1 0
chr17:28675088|28675485 hsa-miR-1295b-5p -15 1 0
chr17:28675088|28675485 hsa-miR-4691-5p -7 1 0
chr17:28675088|28675485 hsa-miR-4676-5p -12 1 0
chr17:28675088|28675485 hsa-miR-10395-5p -11 1 0
chr17:28675088|28675485 hsa-miR-6874-3p -8 1 0
chr17:28675088|28675485 hsa-miR-7162-5p -6 1 0
chr17:28675088|28675485 hsa-miR-548b-5p -5 1 0
chr17:28675088|28675485 hsa-miR-4653-5p -7 1 0
chr17:28675088|28675485 hsa-miR-7157-5p -7 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:28675088|28675485
ORF Type ORF1
Protein Length 32
Nucleotide Length 99
Protein Sequence MLWFLLCEWPVSNREGKLLKRNFFVSNAGGCS
Nucleotide Sequence TTGCTTTGGTTCCTACTATGTGAGTGGCCAGTGAGCAACAGAGAAGGGAAGCTCCTGAAAAGGAACTTCTTTGTGTCAAATGCTGGGGGATGTAGCTAA
CircID chr17:28675088|28675485
ORF Type ORF2
Protein Length 29
Nucleotide Length 90
Protein Sequence MGRKRMGWGSESGAEPGLNCFGSYYVSGQ
Nucleotide Sequence CTGGGTAGGAAAAGGATGGGTTGGGGCTCAGAGTCAGGGGCTGAGCCAGGACTAAATTGCTTTGGTTCCTACTATGTGAGTGGCCAGTGA
CircID chr17:28675088|28675485
ORF Type ORF3
Protein Length 62
Nucleotide Length 186
Protein Sequence MCQMLGDVAKEWFPSCSHGPGNPNTHPNTGFPAQYNIPDSSSSSSSSSGGAMGASMASCPSS
Nucleotide Sequence TTGTGTCAAATGCTGGGGGATGTAGCTAAAGAATGGTTTCCATCCTGTTCCCATGGGCCAGGAAATCCCAATACCCATCCAAACACTGGCTTCCCTGCCCAATATAACATACCTGACTCCTCATCATCTTCTTCCTCCTCCTCTGGAGGAGCCATGGGGGCCTCCATGGCCTCCTGCCCTTCTTCC
CircID chr17:28675088|28675485
ORF Type ORF4
Protein Length 29
Nucleotide Length 90
Protein Sequence MSIIIHNEVVNIWVGKGWVGAQSQGLSQD
Nucleotide Sequence CTGTCCATCATCATCCACAATGAAGTCGTCAATATCTGGGTAGGAAAAGGATGGGTTGGGGCTCAGAGTCAGGGGCTGAGCCAGGACTAA
CircID chr17:28675088|28675485
ORF Type ORF5
Protein Length 45
Nucleotide Length 135
Protein Sequence MGQEIPIPIQTLASLPNITYLTPHHLLPPPLEEPWGPPWPPALLP
Nucleotide Sequence ATGGGCCAGGAAATCCCAATACCCATCCAAACACTGGCTTCCCTGCCCAATATAACATACCTGACTCCTCATCATCTTCTTCCTCCTCCTCTGGAGGAGCCATGGGGGCCTCCATGGCCTCCTGCCCTTCTTCCC
CircID chr17:28675088|28675485
ORF Type ORF6
Protein Length 33
Nucleotide Length 102
Protein Sequence MMRSQVCYIGQGSQCLDGYWDFLAHGNRMETIL
Nucleotide Sequence ATGATGAGGAGTCAGGTATGTTATATTGGGCAGGGAAGCCAGTGTTTGGATGGGTATTGGGATTTCCTGGCCCATGGGAACAGGATGGAAACCATTCTTTAG
CircID chr17:28675088|28675485
ORF Type ORF7
Protein Length 60
Nucleotide Length 180
Protein Sequence MLLTGHSHSRNQSNLVLAQPLTLSPNPSFSYPDIDDFIVDDDGQPLKKPKWRKKLPGYTD
Nucleotide Sequence CTGTTGCTCACTGGCCACTCACATAGTAGGAACCAAAGCAATTTAGTCCTGGCTCAGCCCCTGACTCTGAGCCCCAACCCATCCTTTTCCTACCCAGATATTGACGACTTCATTGTGGATGATGATGGACAGCCTCTGAAAAAACCTAAGTGGCGGAAAAAGCTTCCTGGATACACAGAC
CircID chr17:28675088|28675485
ORF Type ORF8
Protein Length 58
Nucleotide Length 177
Protein Sequence MGREASVWMGIGISWPMGTGWKPFFSYIPQHLTQRSSFSGASLLCCSLATHIVGTKAI
Nucleotide Sequence TTGGGCAGGGAAGCCAGTGTTTGGATGGGTATTGGGATTTCCTGGCCCATGGGAACAGGATGGAAACCATTCTTTAGCTACATCCCCCAGCATTTGACACAAAGAAGTTCCTTTTCAGGAGCTTCCCTTCTCTGTTGCTCACTGGCCACTCACATAGTAGGAACCAAAGCAATTTAG
CircID chr17:28675088|28675485
ORF Type ORF9
Protein Length 53
Nucleotide Length 162
Protein Sequence MEAPMAPPEEEEEDDEESGMLYWAGKPVFGWVLGFPGPWEQDGNHSLATSPSI
Nucleotide Sequence ATGGAGGCCCCCATGGCTCCTCCAGAGGAGGAGGAAGAAGATGATGAGGAGTCAGGTATGTTATATTGGGCAGGGAAGCCAGTGTTTGGATGGGTATTGGGATTTCCTGGCCCATGGGAACAGGATGGAAACCATTCTTTAGCTACATCCCCCAGCATTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab