CircRNA Information

General Information
circRNA Basic Information
CircID chr17:28682777|28683040
Strand -
CircType exon
Host Gene ENSG00000109111.13;
Algorism CIRI2;
Sequence CTGCGGGATAGCTACCAGCGGCACGAGACAGAGCAGTTTCCCGCGGAGCCCTTGGAGCTGGCCAAGGATTACGTTTGCAGGTAGGCATGCAGCAGGTGGCTGACAGGAGGAGGGGCCTGAGGACCACAACACCCTGGTCCTGTAGCTGCACCATTTTCCCCACAGCCAGTTCCCTACTCCAGAAGCTGTGCTAGAAGGCGCCCGCTACATGGTAGCCCTGCAGATTGCCCGTGAGCCCCTTGTCCGGCAGGTGCTGAGGCAAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:28682777|28683040 hsa-miR-370-5p 0 0 1
chr17:28682777|28683040 hsa-miR-370-3p 0 0 1
chr17:28682777|28683040 hsa-miR-522-5p 0 0 1
chr17:28682777|28683040 hsa-miR-522-3p 0 0 1
chr17:28682777|28683040 hsa-miR-588 0 0 1
chr17:28682777|28683040 hsa-miR-609 0 0 1
chr17:28682777|28683040 hsa-miR-1301-5p 0 0 1
chr17:28682777|28683040 hsa-miR-1301-3p 0 0 1
chr17:28682777|28683040 hsa-miR-892b 0 0 1
chr17:28682777|28683040 hsa-miR-1205 0 1 1
chr17:28682777|28683040 hsa-miR-1299 0 0 1
chr17:28682777|28683040 hsa-miR-491-5p 0 0 1
chr17:28682777|28683040 hsa-miR-1184 0 0 1
chr17:28682777|28683040 hsa-miR-566 0 0 1
chr17:28682777|28683040 hsa-miR-362-5p 0 1 1
chr17:28682777|28683040 hsa-miR-500 0 0 1
chr17:28682777|28683040 hsa-miR-516b 0 0 1
chr17:28682777|28683040 hsa-miR-596 1 0 0
chr17:28682777|28683040 hsa-miR-602 1 0 0
chr17:28682777|28683040 hsa-miR-637 1 0 0
chr17:28682777|28683040 hsa-miR-638 1 0 0
chr17:28682777|28683040 hsa-miR-663a 1 0 0
chr17:28682777|28683040 hsa-miR-1183 1 0 0
chr17:28682777|28683040 hsa-miR-2110 0 1 0
chr17:28682777|28683040 hsa-miR-3936 1 0 0
chr17:28682777|28683040 hsa-miR-4437 0 1 0
chr17:28682777|28683040 hsa-miR-4442 0 1 0
chr17:28682777|28683040 hsa-miR-4498 1 0 0
chr17:28682777|28683040 hsa-miR-4516 1 0 0
chr17:28682777|28683040 hsa-miR-3972 1 0 0
chr17:28682777|28683040 hsa-miR-4721 0 1 0
chr17:28682777|28683040 hsa-miR-4734 1 0 0
chr17:28682777|28683040 hsa-miR-4767 1 1 0
chr17:28682777|28683040 hsa-miR-5047 0 1 0
chr17:28682777|28683040 hsa-miR-5682 1 1 0
chr17:28682777|28683040 hsa-miR-6085 0 1 0
chr17:28682777|28683040 hsa-miR-4433b-3p 1 0 0
chr17:28682777|28683040 hsa-miR-3157-5p 0 1 0
chr17:28682777|28683040 hsa-miR-3064-5p 0 1 0
chr17:28682777|28683040 hsa-miR-593-5p 1 0 0
chr17:28682777|28683040 hsa-miR-296-5p 1 0 0
chr17:28682777|28683040 hsa-miR-3187-3p 1 0 0
chr17:28682777|28683040 hsa-miR-197-5p 1 0 0
chr17:28682777|28683040 hsa-miR-5589-5p 1 0 0
chr17:28682777|28683040 hsa-miR-432-5p 1 0 0
chr17:28682777|28683040 hsa-miR-6796-5p 1 0 0
chr17:28682777|28683040 hsa-miR-4697-3p 1 0 0
chr17:28682777|28683040 hsa-miR-6805-5p 1 0 0
chr17:28682777|28683040 hsa-miR-6798-5p 1 0 0
chr17:28682777|28683040 hsa-miR-4633-5p 1 0 0
chr17:28682777|28683040 hsa-miR-6835-5p 1 0 0
chr17:28682777|28683040 hsa-miR-5088-5p 1 0 0
chr17:28682777|28683040 hsa-miR-1229-5p 1 0 0
chr17:28682777|28683040 hsa-miR-4640-5p 1 0 0
chr17:28682777|28683040 hsa-miR-3648 1 0 0
chr17:28682777|28683040 hsa-miR-4667-3p 1 1 0
chr17:28682777|28683040 hsa-miR-149-3p 1 0 0
chr17:28682777|28683040 hsa-miR-6824-5p 1 0 0
chr17:28682777|28683040 hsa-miR-3162-5p 1 0 0
chr17:28682777|28683040 hsa-miR-4776-5p 1 0 0
chr17:28682777|28683040 hsa-miR-3065-3p 0 1 0
chr17:28682777|28683040 hsa-miR-3120-5p 1 0 0
chr17:28682777|28683040 hsa-miR-6499-5p 0 1 0
chr17:28682777|28683040 hsa-miR-6804-3p 0 1 0
chr17:28682777|28683040 hsa-miR-6887-3p 0 1 0
chr17:28682777|28683040 hsa-miR-500a-5p 0 1 0
chr17:28682777|28683040 hsa-miR-744-5p 1 0 0
chr17:28682777|28683040 hsa-miR-3160-5p 0 1 0
chr17:28682777|28683040 hsa-miR-6886-3p 1 0 0
chr17:28682777|28683040 hsa-miR-4749-3p 0 1 0
chr17:28682777|28683040 hsa-miR-2277-5p 1 0 0
chr17:28682777|28683040 hsa-miR-937-3p 1 0 0
chr17:28682777|28683040 hsa-miR-224-3p 0 1 0
chr17:28682777|28683040 hsa-miR-6888-3p 0 1 0
chr17:28682777|28683040 hsa-miR-1207-5p 1 0 0
chr17:28682777|28683040 hsa-miR-6787-5p 1 0 0
chr17:28682777|28683040 hsa-miR-6726-5p 1 0 0
chr17:28682777|28683040 hsa-miR-6743-5p 1 0 0
chr17:28682777|28683040 hsa-miR-6797-5p 1 0 0
chr17:28682777|28683040 hsa-miR-3127-3p 1 0 0
chr17:28682777|28683040 hsa-miR-5196-5p 1 0 0
chr17:28682777|28683040 hsa-miR-6780b-5p 1 0 0
chr17:28682777|28683040 hsa-miR-6836-5p 1 1 0
chr17:28682777|28683040 hsa-miR-4632-5p 1 0 0
chr17:28682777|28683040 hsa-miR-6848-5p 1 0 0
chr17:28682777|28683040 hsa-miR-3199 0 1 0
chr17:28682777|28683040 hsa-miR-4758-5p 1 0 0
chr17:28682777|28683040 hsa-miR-6750-5p 1 1 0
chr17:28682777|28683040 hsa-miR-6753-3p 1 0 0
chr17:28682777|28683040 hsa-miR-6822-5p 0 1 0
chr17:28682777|28683040 hsa-miR-6893-3p 1 1 0
chr17:28682777|28683040 hsa-miR-6792-3p 1 0 0
chr17:28682777|28683040 hsa-miR-6805-3p 1 1 0
chr17:28682777|28683040 hsa-miR-6744-3p 1 0 0
chr17:28682777|28683040 hsa-miR-4691-5p 1 0 0
chr17:28682777|28683040 hsa-miR-6504-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:28682777|28683040
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence LRDSYQRHETEQFPAEPLELAKDYVCR
Nucleotide Sequence CTGCGGGATAGCTACCAGCGGCACGAGACAGAGCAGTTTCCCGCGGAGCCCTTGGAGCTGGCCAAGGATTACGTTTGCAGGTAG
CircID chr17:28682777|28683040
ORF Type ORF2
Protein Length 39
Nucleotide Length 117
Protein Sequence MHHFPHSQFPTPEAVLEGARYMVALQIAREPLVRQVLRQ
Nucleotide Sequence CTGCACCATTTTCCCCACAGCCAGTTCCCTACTCCAGAAGCTGTGCTAGAAGGCGCCCGCTACATGGTAGCCCTGCAGATTGCCCGTGAGCCCCTTGTCCGGCAGGTGCTGAGGCAA
CircID chr17:28682777|28683040
ORF Type ORF3
Protein Length 39
Nucleotide Length 120
Protein Sequence MQVGMQQVADRRRGLRTTTPWSCSCTIFPTASSLLQKLC
Nucleotide Sequence TTGCAGGTAGGCATGCAGCAGGTGGCTGACAGGAGGAGGGGCCTGAGGACCACAACACCCTGGTCCTGTAGCTGCACCATTTTCCCCACAGCCAGTTCCCTACTCCAGAAGCTGTGCTAG
CircID chr17:28682777|28683040
ORF Type ORF4
Protein Length 55
Nucleotide Length 165
Protein Sequence MWGKWCSYRTRVLWSSGPSSCQPPAACLPANVILGQLQGLRGKLLCLVPLVAIPQ
Nucleotide Sequence CTGTGGGGAAAATGGTGCAGCTACAGGACCAGGGTGTTGTGGTCCTCAGGCCCCTCCTCCTGTCAGCCACCTGCTGCATGCCTACCTGCAAACGTAATCCTTGGCCAGCTCCAAGGGCTCCGCGGGAAACTGCTCTGTCTCGTGCCGCTGGTAGCTATCCCGCAG
CircID chr17:28682777|28683040
ORF Type ORF5
Protein Length 56
Nucleotide Length 168
Protein Sequence MAVGKMVQLQDQGVVVLRPLLLSATCCMPTCKRNPWPAPRAPRETALSRAAGSYPA
Nucleotide Sequence CTGGCTGTGGGGAAAATGGTGCAGCTACAGGACCAGGGTGTTGTGGTCCTCAGGCCCCTCCTCCTGTCAGCCACCTGCTGCATGCCTACCTGCAAACGTAATCCTTGGCCAGCTCCAAGGGCTCCGCGGGAAACTGCTCTGTCTCGTGCCGCTGGTAGCTATCCCGCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab