CircRNA Information

General Information
circRNA Basic Information
CircID chr17:28697710|28698020
Strand +
CircType exon
Host Gene ENSG00000109111.13;
Algorism CIRI2;
Sequence CCCGGGGCTGGTATCCCAGTAGGAACTTGCCGGGCAGTTCCTTGCAGGCACAGATGAAATAAGGGATGAAGGTGGGCTTCTCCTTCTTAGTTTTGATGAGCAGCTCCTCTAATTTCTGGGGGTAGAATGAGGGGGAGAGGTTGGGATAGCAGCATGCTTGGTACACAACGTCTGGTGCACACATGATGTACACTTCCTTCACCGCCTGAGTGTCCCCTATACTGAAGGGAAAGCGTACATCCTTAAGTGATTGGCAAGTGTCATTCCTCAGAGGGCCCTGGGCTTACCTTGCGGTCCCCACCGCTGCAGTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:28697710|28698020 hsa-miR-204-5p 0 0 1
chr17:28697710|28698020 hsa-miR-204-3p 0 0 1
chr17:28697710|28698020 hsa-miR-205-5p 0 0 1
chr17:28697710|28698020 hsa-miR-205-3p 0 0 1
chr17:28697710|28698020 hsa-miR-211-5p 0 0 1
chr17:28697710|28698020 hsa-miR-211-3p 0 0 1
chr17:28697710|28698020 hsa-miR-34b-5p 0 0 1
chr17:28697710|28698020 hsa-miR-34b-3p 0 0 1
chr17:28697710|28698020 hsa-miR-425-5p 0 0 1
chr17:28697710|28698020 hsa-miR-425-3p 0 0 1
chr17:28697710|28698020 hsa-miR-510-5p 0 0 1
chr17:28697710|28698020 hsa-miR-510-3p 0 0 1
chr17:28697710|28698020 hsa-miR-558 0 0 1
chr17:28697710|28698020 hsa-miR-623 1 0 1
chr17:28697710|28698020 hsa-miR-634 0 0 1
chr17:28697710|28698020 hsa-miR-1323 0 1 1
chr17:28697710|28698020 hsa-miR-708-5p 0 0 1
chr17:28697710|28698020 hsa-miR-708-3p 0 0 1
chr17:28697710|28698020 hsa-miR-877-5p 0 0 1
chr17:28697710|28698020 hsa-miR-877-3p 0 0 1
chr17:28697710|28698020 hsa-miR-1265 0 0 1
chr17:28697710|28698020 hsa-miR-548o-3p 0 0 1
chr17:28697710|28698020 hsa-miR-1252-5p 0 0 1
chr17:28697710|28698020 hsa-miR-1252-3p 0 0 1
chr17:28697710|28698020 hsa-miR-548o 0 0 1
chr17:28697710|28698020 hsa-miR-491-5p 0 0 1
chr17:28697710|28698020 hsa-miR-767-5p 1 0 1
chr17:28697710|28698020 hsa-miR-1184 0 0 1
chr17:28697710|28698020 hsa-miR-361-3p 0 0 1
chr17:28697710|28698020 hsa-miR-1224-3p 0 1 1
chr17:28697710|28698020 hsa-miR-28-5p 0 0 1
chr17:28697710|28698020 hsa-miR-188-5p 0 0 1
chr17:28697710|28698020 hsa-miR-767-3p 0 0 1
chr17:28697710|28698020 hsa-miR-509-3-5p 0 1 1
chr17:28697710|28698020 hsa-miR-509-5p 0 1 1
chr17:28697710|28698020 hsa-miR-550 0 0 1
chr17:28697710|28698020 hsa-miR-499-3p 0 0 1
chr17:28697710|28698020 hsa-miR-638 1 0 0
chr17:28697710|28698020 hsa-miR-3921 0 1 0
chr17:28697710|28698020 hsa-miR-3937 0 1 0
chr17:28697710|28698020 hsa-miR-4705 0 1 0
chr17:28697710|28698020 hsa-miR-4741 1 0 0
chr17:28697710|28698020 hsa-miR-8072 1 0 0
chr17:28697710|28698020 hsa-miR-8089 1 0 0
chr17:28697710|28698020 hsa-miR-12120 0 1 0
chr17:28697710|28698020 hsa-miR-370-3p 1 0 0
chr17:28697710|28698020 hsa-miR-4726-3p 1 0 0
chr17:28697710|28698020 hsa-miR-6880-5p 1 1 0
chr17:28697710|28698020 hsa-miR-593-5p 1 0 0
chr17:28697710|28698020 hsa-miR-6786-5p 1 1 0
chr17:28697710|28698020 hsa-miR-4667-3p 0 1 0
chr17:28697710|28698020 hsa-miR-6824-5p 0 1 0
chr17:28697710|28698020 hsa-miR-550b-2-5p 0 1 0
chr17:28697710|28698020 hsa-miR-1236-3p 0 1 0
chr17:28697710|28698020 hsa-miR-1911-3p 0 1 0
chr17:28697710|28698020 hsa-miR-6758-3p 0 1 0
chr17:28697710|28698020 hsa-miR-6795-3p 1 1 0
chr17:28697710|28698020 hsa-miR-3177-5p 0 1 0
chr17:28697710|28698020 hsa-miR-6731-3p 0 1 0
chr17:28697710|28698020 hsa-miR-6756-5p 1 0 0
chr17:28697710|28698020 hsa-miR-6722-3p 1 0 0
chr17:28697710|28698020 hsa-miR-4755-5p 0 1 0
chr17:28697710|28698020 hsa-miR-6866-3p 0 1 0
chr17:28697710|28698020 hsa-miR-6836-5p 1 0 0
chr17:28697710|28698020 hsa-miR-4685-5p 1 1 0
chr17:28697710|28698020 hsa-miR-4749-5p 1 0 0
chr17:28697710|28698020 hsa-miR-10396a-3p 1 0 0
chr17:28697710|28698020 hsa-miR-10396b-3p 1 0 0
chr17:28697710|28698020 hsa-miR-1271-3p 1 1 0
chr17:28697710|28698020 hsa-miR-4665-5p 1 0 0
chr17:28697710|28698020 hsa-miR-10398-3p 1 0 0
chr17:28697710|28698020 hsa-miR-6750-5p 0 1 0
chr17:28697710|28698020 hsa-miR-550a-3-5p 0 1 0
chr17:28697710|28698020 hsa-miR-550a-5p 0 1 0
chr17:28697710|28698020 hsa-miR-6837-5p 1 1 0
chr17:28697710|28698020 hsa-miR-619-5p 0 1 0
chr17:28697710|28698020 hsa-miR-6764-5p 0 1 0
chr17:28697710|28698020 hsa-miR-6506-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:28697710|28698020
ORF Type ORF1
Protein Length 30
Nucleotide Length 93
Protein Sequence MVHNVWCTHDVHFLHRLSVPYTEGKAYILK
Nucleotide Sequence TTGGTACACAACGTCTGGTGCACACATGATGTACACTTCCTTCACCGCCTGAGTGTCCCCTATACTGAAGGGAAAGCGTACATCCTTAAGTGA
CircID chr17:28697710|28698020
ORF Type ORF2
Protein Length 30
Nucleotide Length 90
Protein Sequence MKGKRTSLSDWQVSFLRGPWAYLAVPTAAV
Nucleotide Sequence CTGAAGGGAAAGCGTACATCCTTAAGTGATTGGCAAGTGTCATTCCTCAGAGGGCCCTGGGCTTACCTTGCGGTCCCCACCGCTGCAGTC
CircID chr17:28697710|28698020
ORF Type ORF3
Protein Length 90
Nucleotide Length 270
Protein Sequence MRNDTCQSLKDVRFPFSIGDTQAVKEVYIMCAPDVVYQACCYPNLSPSFYPQKLEELLIKTKKEKPTFIPYFICACKELPGKFLLGYQPR
Nucleotide Sequence CTGAGGAATGACACTTGCCAATCACTTAAGGATGTACGCTTTCCCTTCAGTATAGGGGACACTCAGGCGGTGAAGGAAGTGTACATCATGTGTGCACCAGACGTTGTGTACCAAGCATGCTGCTATCCCAACCTCTCCCCCTCATTCTACCCCCAGAAATTAGAGGAGCTGCTCATCAAAACTAAGAAGGAGAAGCCCACCTTCATCCCTTATTTCATCTGTGCCTGCAAGGAACTGCCCGGCAAGTTCCTACTGGGATACCAGCCCCGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab