CircRNA Information

General Information
circRNA Basic Information
CircID chr17:28703606|28703959
Strand -
CircType exon
Host Gene ENSG00000167525.12;
Algorism CIRI2;
Sequence CTTCCTGGCTTGTGAGGGCTTTGCCCCTGTCTTTTTGGCCTGGACTGTGTTCTCTCTCTTCCTGGGCGATGATGATTCCACAATATCCTCGCTGGACAGTTCTCCCTGCCCCCGGCCATTGTAACTGTCCTCGCTCTCCAGCTCTTCCCGGCTTTCTGGGCTGGACTCGGACATCCTGGCCAGCTGTCTTGCGCTTAATGATCGGCTCACGTCTGGCGGGGAAGGCTCCAATTTAACCGGGCTTTTCTTCTTAGTCAACTGGCCTTTCTTGGCTTTTTTCTTCAGCTTTGCCTTCTCATCCATCTCCTCCTTGTCTTTCTCTTTTTCCTTTTTCTTCTTTACCTTCTTGATCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:28703606|28703959 hsa-miR-198 0 0 1
chr17:28703606|28703959 hsa-miR-146a-5p 0 0 1
chr17:28703606|28703959 hsa-miR-146a-3p 0 0 1
chr17:28703606|28703959 hsa-miR-185-5p 0 0 1
chr17:28703606|28703959 hsa-miR-185-3p 0 0 1
chr17:28703606|28703959 hsa-miR-186-5p 0 0 1
chr17:28703606|28703959 hsa-miR-186-3p 0 0 1
chr17:28703606|28703959 hsa-miR-320a-5p 0 0 1
chr17:28703606|28703959 hsa-miR-320a-3p 0 0 1
chr17:28703606|28703959 hsa-miR-518e-5p 0 0 1
chr17:28703606|28703959 hsa-miR-518e-3p 0 0 1
chr17:28703606|28703959 hsa-miR-611 0 0 1
chr17:28703606|28703959 hsa-miR-765 1 1 1
chr17:28703606|28703959 hsa-miR-935 0 0 1
chr17:28703606|28703959 hsa-miR-1253 0 0 1
chr17:28703606|28703959 hsa-miR-1255a 0 0 1
chr17:28703606|28703959 hsa-miR-1265 0 0 1
chr17:28703606|28703959 hsa-miR-513b-5p 0 0 1
chr17:28703606|28703959 hsa-miR-513b-3p 0 0 1
chr17:28703606|28703959 hsa-miR-486-3p 0 0 1
chr17:28703606|28703959 hsa-miR-1207-3p 0 1 1
chr17:28703606|28703959 hsa-miR-1207-5p 1 1 1
chr17:28703606|28703959 hsa-miR-320b 1 1 1
chr17:28703606|28703959 hsa-miR-320c 0 0 1
chr17:28703606|28703959 hsa-miR-320d 0 0 1
chr17:28703606|28703959 hsa-miR-455-3p 0 1 1
chr17:28703606|28703959 hsa-miR-146b-5p 0 0 1
chr17:28703606|28703959 hsa-miR-1255b 0 0 1
chr17:28703606|28703959 hsa-miR-1300 0 0 1
chr17:28703606|28703959 hsa-miR-1185 0 0 1
chr17:28703606|28703959 hsa-miR-762 1 0 0
chr17:28703606|28703959 hsa-miR-1275 1 0 0
chr17:28703606|28703959 hsa-miR-3125 1 0 0
chr17:28703606|28703959 hsa-miR-3131 1 1 0
chr17:28703606|28703959 hsa-miR-3132 1 0 0
chr17:28703606|28703959 hsa-miR-3153 1 0 0
chr17:28703606|28703959 hsa-miR-3197 1 0 0
chr17:28703606|28703959 hsa-miR-4270 1 1 0
chr17:28703606|28703959 hsa-miR-3652 1 0 0
chr17:28703606|28703959 hsa-miR-3916 0 1 0
chr17:28703606|28703959 hsa-miR-1268b 1 0 0
chr17:28703606|28703959 hsa-miR-4428 1 0 0
chr17:28703606|28703959 hsa-miR-4429 1 1 0
chr17:28703606|28703959 hsa-miR-4441 1 1 0
chr17:28703606|28703959 hsa-miR-3135b 1 1 0
chr17:28703606|28703959 hsa-miR-4462 1 0 0
chr17:28703606|28703959 hsa-miR-4478 1 0 0
chr17:28703606|28703959 hsa-miR-4487 1 0 0
chr17:28703606|28703959 hsa-miR-4488 1 0 0
chr17:28703606|28703959 hsa-miR-4498 1 0 0
chr17:28703606|28703959 hsa-miR-2392 1 0 0
chr17:28703606|28703959 hsa-miR-1587 1 0 0
chr17:28703606|28703959 hsa-miR-4537 1 1 0
chr17:28703606|28703959 hsa-miR-4644 1 1 0
chr17:28703606|28703959 hsa-miR-4688 0 1 0
chr17:28703606|28703959 hsa-miR-4689 1 0 0
chr17:28703606|28703959 hsa-miR-4706 1 0 0
chr17:28703606|28703959 hsa-miR-4739 1 1 0
chr17:28703606|28703959 hsa-miR-4784 1 1 0
chr17:28703606|28703959 hsa-miR-5093 1 0 0
chr17:28703606|28703959 hsa-miR-5194 1 0 0
chr17:28703606|28703959 hsa-miR-5787 1 1 0
chr17:28703606|28703959 hsa-miR-6077 0 1 0
chr17:28703606|28703959 hsa-miR-6088 1 0 0
chr17:28703606|28703959 hsa-miR-6090 1 0 0
chr17:28703606|28703959 hsa-miR-6124 1 0 0
chr17:28703606|28703959 hsa-miR-6125 1 0 0
chr17:28703606|28703959 hsa-miR-6133 1 0 0
chr17:28703606|28703959 hsa-miR-6165 1 0 0
chr17:28703606|28703959 hsa-miR-6863 0 1 0
chr17:28703606|28703959 hsa-miR-8078 1 0 0
chr17:28703606|28703959 hsa-miR-8085 1 1 0
chr17:28703606|28703959 hsa-miR-8089 1 0 0
chr17:28703606|28703959 hsa-miR-12114 1 0 0
chr17:28703606|28703959 hsa-miR-12118 1 1 0
chr17:28703606|28703959 hsa-miR-4433b-3p 1 0 0
chr17:28703606|28703959 hsa-miR-4747-3p 1 0 0
chr17:28703606|28703959 hsa-miR-6734-5p 1 0 0
chr17:28703606|28703959 hsa-miR-6809-5p 1 1 0
chr17:28703606|28703959 hsa-miR-6765-5p 1 0 0
chr17:28703606|28703959 hsa-miR-671-5p 1 1 0
chr17:28703606|28703959 hsa-miR-136-3p 0 1 0
chr17:28703606|28703959 hsa-miR-7106-5p 1 0 0
chr17:28703606|28703959 hsa-miR-6894-5p 1 0 0
chr17:28703606|28703959 hsa-miR-1972 0 1 0
chr17:28703606|28703959 hsa-miR-6720-5p 0 1 0
chr17:28703606|28703959 hsa-miR-6799-5p 1 0 0
chr17:28703606|28703959 hsa-miR-6510-5p 1 0 0
chr17:28703606|28703959 hsa-miR-6728-5p 1 0 0
chr17:28703606|28703959 hsa-miR-766-5p 1 0 0
chr17:28703606|28703959 hsa-miR-1236-5p 1 0 0
chr17:28703606|28703959 hsa-miR-3926 1 1 0
chr17:28703606|28703959 hsa-miR-5187-5p 1 0 0
chr17:28703606|28703959 hsa-miR-4786-5p 1 0 0
chr17:28703606|28703959 hsa-miR-6089 1 0 0
chr17:28703606|28703959 hsa-miR-6757-5p 1 0 0
chr17:28703606|28703959 hsa-miR-6873-5p 1 1 0
chr17:28703606|28703959 hsa-miR-6880-5p 1 0 0
chr17:28703606|28703959 hsa-miR-7847-3p 1 0 0
chr17:28703606|28703959 hsa-miR-4695-5p 1 0 0
chr17:28703606|28703959 hsa-miR-6744-5p 1 0 0
chr17:28703606|28703959 hsa-miR-4753-5p 0 1 0
chr17:28703606|28703959 hsa-miR-6721-5p 0 1 0
chr17:28703606|28703959 hsa-miR-8069 1 0 0
chr17:28703606|28703959 hsa-miR-7845-5p 1 0 0
chr17:28703606|28703959 hsa-miR-7108-5p 1 0 0
chr17:28703606|28703959 hsa-miR-3605-5p 1 0 0
chr17:28703606|28703959 hsa-miR-6770-5p 1 1 0
chr17:28703606|28703959 hsa-miR-6760-5p 1 1 0
chr17:28703606|28703959 hsa-miR-3150b-3p 1 1 0
chr17:28703606|28703959 hsa-miR-3934-3p 1 0 0
chr17:28703606|28703959 hsa-miR-1226-5p 1 0 0
chr17:28703606|28703959 hsa-miR-204-3p 1 0 0
chr17:28703606|28703959 hsa-miR-1229-5p 1 0 0
chr17:28703606|28703959 hsa-miR-4640-5p 1 0 0
chr17:28703606|28703959 hsa-miR-1228-5p 1 0 0
chr17:28703606|28703959 hsa-miR-3677-3p 1 0 0
chr17:28703606|28703959 hsa-miR-3160-3p 0 1 0
chr17:28703606|28703959 hsa-miR-6830-5p 0 1 0
chr17:28703606|28703959 hsa-miR-5584-5p 0 1 0
chr17:28703606|28703959 hsa-miR-3190-5p 0 1 0
chr17:28703606|28703959 hsa-miR-3922-5p 1 0 0
chr17:28703606|28703959 hsa-miR-6832-5p 1 1 0
chr17:28703606|28703959 hsa-miR-1295b-3p 1 0 0
chr17:28703606|28703959 hsa-miR-2277-5p 1 0 0
chr17:28703606|28703959 hsa-miR-4763-3p 1 1 0
chr17:28703606|28703959 hsa-miR-6816-5p 1 0 0
chr17:28703606|28703959 hsa-miR-6870-5p 1 0 0
chr17:28703606|28703959 hsa-miR-1343-5p 1 0 0
chr17:28703606|28703959 hsa-miR-5001-5p 1 0 0
chr17:28703606|28703959 hsa-miR-6743-5p 1 1 0
chr17:28703606|28703959 hsa-miR-6754-5p 1 1 0
chr17:28703606|28703959 hsa-miR-6851-5p 1 0 0
chr17:28703606|28703959 hsa-miR-11181-3p 1 1 0
chr17:28703606|28703959 hsa-miR-6722-3p 1 0 0
chr17:28703606|28703959 hsa-miR-6763-5p 1 0 0
chr17:28703606|28703959 hsa-miR-6797-5p 1 0 0
chr17:28703606|28703959 hsa-miR-7111-5p 1 0 0
chr17:28703606|28703959 hsa-miR-3620-5p 1 0 0
chr17:28703606|28703959 hsa-miR-4728-5p 1 0 0
chr17:28703606|28703959 hsa-miR-5196-5p 1 0 0
chr17:28703606|28703959 hsa-miR-6780b-5p 1 0 0
chr17:28703606|28703959 hsa-miR-10526-3p 1 0 0
chr17:28703606|28703959 hsa-miR-1909-3p 1 1 0
chr17:28703606|28703959 hsa-miR-328-5p 1 1 0
chr17:28703606|28703959 hsa-miR-4725-3p 1 0 0
chr17:28703606|28703959 hsa-miR-4726-5p 1 0 0
chr17:28703606|28703959 hsa-miR-4749-5p 1 0 0
chr17:28703606|28703959 hsa-miR-6729-5p 1 0 0
chr17:28703606|28703959 hsa-miR-6794-5p 1 0 0
chr17:28703606|28703959 hsa-miR-6858-5p 1 0 0
chr17:28703606|28703959 hsa-miR-4723-5p 1 0 0
chr17:28703606|28703959 hsa-miR-6831-5p 1 1 0
chr17:28703606|28703959 hsa-miR-939-5p 1 0 0
chr17:28703606|28703959 hsa-miR-4758-5p 1 0 0
chr17:28703606|28703959 hsa-miR-6731-5p 1 0 0
chr17:28703606|28703959 hsa-miR-6739-5p 0 1 0
chr17:28703606|28703959 hsa-miR-6758-5p 1 0 0
chr17:28703606|28703959 hsa-miR-6736-5p 1 0 0
chr17:28703606|28703959 hsa-miR-4700-5p 1 1 0
chr17:28703606|28703959 hsa-miR-3173-3p 1 0 0
chr17:28703606|28703959 hsa-miR-3679-5p 1 1 0
chr17:28703606|28703959 hsa-miR-4646-5p 1 0 0
chr17:28703606|28703959 hsa-miR-4747-5p 1 0 0
chr17:28703606|28703959 hsa-miR-6876-5p 1 0 0
chr17:28703606|28703959 hsa-miR-6891-5p 1 1 0
chr17:28703606|28703959 hsa-miR-6785-5p 1 0 0
chr17:28703606|28703959 hsa-miR-4667-5p 1 0 0
chr17:28703606|28703959 hsa-miR-6822-5p 1 0 0
chr17:28703606|28703959 hsa-miR-4690-3p 0 1 0
chr17:28703606|28703959 hsa-miR-6733-5p 1 0 0
chr17:28703606|28703959 hsa-miR-9902 0 1 0
chr17:28703606|28703959 hsa-miR-7161-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr17:28703606|28703959
ORF Type ORF1
Protein Length 30
Nucleotide Length 93
Protein Sequence MPPAIVTVLALQLFPAFWAGLGHPGQLSCA
Nucleotide Sequence CTGCCCCCGGCCATTGTAACTGTCCTCGCTCTCCAGCTCTTCCCGGCTTTCTGGGCTGGACTCGGACATCCTGGCCAGCTGTCTTGCGCTTAA
CircID chr17:28703606|28703959
ORF Type ORF2
Protein Length 32
Nucleotide Length 96
Protein Sequence MAFLGFFLQLCLLIHLLLVFLFFLFLLYLLDH
Nucleotide Sequence CTGGCCTTTCTTGGCTTTTTTCTTCAGCTTTGCCTTCTCATCCATCTCCTCCTTGTCTTTCTCTTTTTCCTTTTTCTTCTTTACCTTCTTGATCAC
CircID chr17:28703606|28703959
ORF Type ORF3
Protein Length 39
Nucleotide Length 120
Protein Sequence MACEGFAPVFLAWTVFSLFLGDDDSTISSLDSSPCPRPL
Nucleotide Sequence CTGGCTTGTGAGGGCTTTGCCCCTGTCTTTTTGGCCTGGACTGTGTTCTCTCTCTTCCTGGGCGATGATGATTCCACAATATCCTCGCTGGACAGTTCTCCCTGCCCCCGGCCATTGTAA
CircID chr17:28703606|28703959
ORF Type ORF4
Protein Length 76
Nucleotide Length 228
Protein Sequence MSSLSSSSRLSGLDSDILASCLALNDRLTSGGEGSNLTGLFFLVNWPFLAFFFSFAFSSISSLSFSFSFFFFTFLI
Nucleotide Sequence CTGTCCTCGCTCTCCAGCTCTTCCCGGCTTTCTGGGCTGGACTCGGACATCCTGGCCAGCTGTCTTGCGCTTAATGATCGGCTCACGTCTGGCGGGGAAGGCTCCAATTTAACCGGGCTTTTCTTCTTAGTCAACTGGCCTTTCTTGGCTTTTTTCTTCAGCTTTGCCTTCTCATCCATCTCCTCCTTGTCTTTCTCTTTTTCCTTTTTCTTCTTTACCTTCTTGATC
CircID chr17:28703606|28703959
ORF Type ORF5
Protein Length 71
Nucleotide Length 216
Protein Sequence MPLSFWPGLCSLSSWAMMIPQYPRWTVLPAPGHCNCPRSPALPGFLGWTRTSWPAVLRLMIGSRLAGKAPI
Nucleotide Sequence TTGCCCCTGTCTTTTTGGCCTGGACTGTGTTCTCTCTCTTCCTGGGCGATGATGATTCCACAATATCCTCGCTGGACAGTTCTCCCTGCCCCCGGCCATTGTAACTGTCCTCGCTCTCCAGCTCTTCCCGGCTTTCTGGGCTGGACTCGGACATCCTGGCCAGCTGTCTTGCGCTTAATGATCGGCTCACGTCTGGCGGGGAAGGCTCCAATTTAA
CircID chr17:28703606|28703959
ORF Type ORF6
Protein Length 101
Nucleotide Length 303
Protein Sequence MDEKAKLKKKAKKGQLTKKKSPVKLEPSPPDVSRSLSARQLARMSESSPESREELESEDSYNGRGQGELSSEDIVESSSPRKRENTVQAKKTGAKPSQARK
Nucleotide Sequence ATGGATGAGAAGGCAAAGCTGAAGAAAAAAGCCAAGAAAGGCCAGTTGACTAAGAAGAAAAGCCCGGTTAAATTGGAGCCTTCCCCGCCAGACGTGAGCCGATCATTAAGCGCAAGACAGCTGGCCAGGATGTCCGAGTCCAGCCCAGAAAGCCGGGAAGAGCTGGAGAGCGAGGACAGTTACAATGGCCGGGGGCAGGGAGAACTGTCCAGCGAGGATATTGTGGAATCATCATCGCCCAGGAAGAGAGAGAACACAGTCCAGGCCAAAAAGACAGGGGCAAAGCCCTCACAAGCCAGGAAG
CircID chr17:28703606|28703959
ORF Type ORF7
Protein Length 39
Nucleotide Length 117
Protein Sequence MAGGRENCPARILWNHHRPGRERTQSRPKRQGQSPHKPG
Nucleotide Sequence ATGGCCGGGGGCAGGGAGAACTGTCCAGCGAGGATATTGTGGAATCATCATCGCCCAGGAAGAGAGAGAACACAGTCCAGGCCAAAAAGACAGGGGCAAAGCCCTCACAAGCCAGGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab