CircRNA Information

General Information
circRNA Basic Information
CircID chr17:28748289|28748666
Strand +
CircType exon
Host Gene ENSG00000076604.13;
Algorism CIRI2;
Sequence CCTGTGCTTGCAGCCGGAGTCTTTGAATGGGCAGAGCACCAGGGCGGTGTTACAGCTGTCCTTCAGATGGCCTGGCAGGTCCTCCCGAGCCACAGTGCCCACACCACATTGGTTGGGGCAGGCAACAGGCAGCCTTGGGCACTGGTACTGGTGGCTCTGGGGCCACAGAAGTAGAGAGGCAGGAGTCAATATCCTGACTACCTGTCACCTACCCTGCAACCCACAGTTCAGGGAAGGCCTCACCTGGATGGTGTCAAAGACGAACTCCTTAGTGCAGTAGGTGCAGGGCTGAGTGCGCTTGGGGCACTCAGAGGTGGCATGCTGGGCCAGCAGCCGCCGCATCATGCGGGCACCACACTTATTCTCACAGTAGACACT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:28748289|28748666 hsa-miR-217-5p 0 0 1
chr17:28748289|28748666 hsa-miR-217-3p 0 0 1
chr17:28748289|28748666 hsa-miR-196b-5p 0 0 1
chr17:28748289|28748666 hsa-miR-196b-3p 0 0 1
chr17:28748289|28748666 hsa-miR-492 0 1 1
chr17:28748289|28748666 hsa-miR-580-5p 0 0 1
chr17:28748289|28748666 hsa-miR-580-3p 0 0 1
chr17:28748289|28748666 hsa-miR-595 0 0 1
chr17:28748289|28748666 hsa-miR-892a 0 0 1
chr17:28748289|28748666 hsa-miR-934 0 0 1
chr17:28748289|28748666 hsa-miR-663b 1 1 1
chr17:28748289|28748666 hsa-miR-1252-5p 0 0 1
chr17:28748289|28748666 hsa-miR-1252-3p 0 0 1
chr17:28748289|28748666 hsa-miR-1322 0 1 1
chr17:28748289|28748666 hsa-miR-1825 0 1 1
chr17:28748289|28748666 hsa-miR-512-5p 0 1 1
chr17:28748289|28748666 hsa-miR-125a-3p 0 1 1
chr17:28748289|28748666 hsa-miR-770-5p 1 1 1
chr17:28748289|28748666 hsa-miR-338-3p 0 0 1
chr17:28748289|28748666 hsa-miR-324-3p 1 0 1
chr17:28748289|28748666 hsa-miR-125a-5p 0 0 1
chr17:28748289|28748666 hsa-miR-509-3-5p 0 0 1
chr17:28748289|28748666 hsa-miR-509-5p 0 0 1
chr17:28748289|28748666 hsa-miR-542-3p 0 0 1
chr17:28748289|28748666 hsa-miR-1274a 0 0 1
chr17:28748289|28748666 hsa-miR-125b 0 0 1
chr17:28748289|28748666 hsa-miR-514 0 0 1
chr17:28748289|28748666 hsa-miR-196a 0 0 1
chr17:28748289|28748666 hsa-miR-194 0 0 1
chr17:28748289|28748666 hsa-miR-596 1 0 0
chr17:28748289|28748666 hsa-miR-1913 0 1 0
chr17:28748289|28748666 hsa-miR-1976 0 1 0
chr17:28748289|28748666 hsa-miR-3142 0 1 0
chr17:28748289|28748666 hsa-miR-4322 0 1 0
chr17:28748289|28748666 hsa-miR-3907 0 1 0
chr17:28748289|28748666 hsa-miR-3921 0 1 0
chr17:28748289|28748666 hsa-miR-4507 0 1 0
chr17:28748289|28748666 hsa-miR-4519 1 0 0
chr17:28748289|28748666 hsa-miR-4522 0 1 0
chr17:28748289|28748666 hsa-miR-4539 0 1 0
chr17:28748289|28748666 hsa-miR-3960 0 1 0
chr17:28748289|28748666 hsa-miR-4658 0 1 0
chr17:28748289|28748666 hsa-miR-4686 1 0 0
chr17:28748289|28748666 hsa-miR-4751 0 1 0
chr17:28748289|28748666 hsa-miR-7974 1 0 0
chr17:28748289|28748666 hsa-miR-8080 0 1 0
chr17:28748289|28748666 hsa-miR-12113 0 1 0
chr17:28748289|28748666 hsa-miR-12132 1 0 0
chr17:28748289|28748666 hsa-miR-3194-3p 0 1 0
chr17:28748289|28748666 hsa-miR-6747-3p 0 1 0
chr17:28748289|28748666 hsa-miR-3692-5p 0 1 0
chr17:28748289|28748666 hsa-miR-6089 1 0 0
chr17:28748289|28748666 hsa-miR-7154-3p 0 1 0
chr17:28748289|28748666 hsa-miR-4755-3p 0 1 0
chr17:28748289|28748666 hsa-miR-874-5p 0 1 0
chr17:28748289|28748666 hsa-miR-191-3p 1 1 0
chr17:28748289|28748666 hsa-miR-6793-5p 0 1 0
chr17:28748289|28748666 hsa-miR-4793-3p 0 1 0
chr17:28748289|28748666 hsa-miR-5006-5p 0 1 0
chr17:28748289|28748666 hsa-miR-6882-3p 0 1 0
chr17:28748289|28748666 hsa-miR-345-3p 0 1 0
chr17:28748289|28748666 hsa-miR-4763-5p 0 1 0
chr17:28748289|28748666 hsa-miR-1909-5p 1 1 0
chr17:28748289|28748666 hsa-miR-4707-3p 1 0 0
chr17:28748289|28748666 hsa-miR-6894-3p 0 1 0
chr17:28748289|28748666 hsa-miR-4715-3p 0 1 0
chr17:28748289|28748666 hsa-miR-6514-3p 0 1 0
chr17:28748289|28748666 hsa-miR-6771-5p 1 1 0
chr17:28748289|28748666 hsa-miR-6800-5p 0 1 0
chr17:28748289|28748666 hsa-miR-199a-5p 0 1 0
chr17:28748289|28748666 hsa-miR-3120-5p 0 1 0
chr17:28748289|28748666 hsa-miR-6811-3p 1 0 0
chr17:28748289|28748666 hsa-miR-1910-5p 0 1 0
chr17:28748289|28748666 hsa-miR-6814-5p 0 1 0
chr17:28748289|28748666 hsa-miR-6738-3p 0 1 0
chr17:28748289|28748666 hsa-miR-624-5p 0 1 0
chr17:28748289|28748666 hsa-miR-6779-3p 0 1 0
chr17:28748289|28748666 hsa-miR-670-5p 0 1 0
chr17:28748289|28748666 hsa-miR-371b-3p 0 1 0
chr17:28748289|28748666 hsa-miR-6838-3p 0 1 0
chr17:28748289|28748666 hsa-miR-500a-3p 0 1 0
chr17:28748289|28748666 hsa-miR-196a-5p 0 1 0
chr17:28748289|28748666 hsa-miR-199b-5p 0 1 0
chr17:28748289|28748666 hsa-miR-514a-3p 0 1 0
chr17:28748289|28748666 hsa-miR-744-3p 0 1 0
chr17:28748289|28748666 hsa-miR-4749-5p 1 0 0
chr17:28748289|28748666 hsa-miR-3940-5p 0 1 0
chr17:28748289|28748666 hsa-miR-5008-3p 1 0 0
chr17:28748289|28748666 hsa-miR-4722-3p 0 1 0
chr17:28748289|28748666 hsa-miR-6893-3p 0 1 0
chr17:28748289|28748666 hsa-miR-6805-3p 0 1 0
chr17:28748289|28748666 hsa-miR-6775-3p 0 1 0
chr17:28748289|28748666 hsa-miR-4723-3p 0 1 0
chr17:28748289|28748666 hsa-miR-5581-5p 0 1 0
chr17:28748289|28748666 hsa-miR-514b-3p 0 1 0
chr17:28748289|28748666 hsa-miR-4712-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:28748289|28748666
ORF Type ORF1
Protein Length 35
Nucleotide Length 108
Protein Sequence MAWQVLPSHSAHTTLVGAGNRQPWALVLVALGPQK
Nucleotide Sequence ATGGCCTGGCAGGTCCTCCCGAGCCACAGTGCCCACACCACATTGGTTGGGGCAGGCAACAGGCAGCCTTGGGCACTGGTACTGGTGGCTCTGGGGCCACAGAAGTAG
CircID chr17:28748289|28748666
ORF Type ORF2
Protein Length 59
Nucleotide Length 177
Protein Sequence MSPTLQPTVQGRPHLDGVKDELLSAVGAGLSALGALRGGMLGQQPPHHAGTTLILTVDT
Nucleotide Sequence CTGTCACCTACCCTGCAACCCACAGTTCAGGGAAGGCCTCACCTGGATGGTGTCAAAGACGAACTCCTTAGTGCAGTAGGTGCAGGGCTGAGTGCGCTTGGGGCACTCAGAGGTGGCATGCTGGGCCAGCAGCCGCCGCATCATGCGGGCACCACACTTATTCTCACAGTAGACACT
CircID chr17:28748289|28748666
ORF Type ORF3
Protein Length 92
Nucleotide Length 279
Protein Sequence LCLQPESLNGQSTRAVLQLSFRWPGRSSRATVPTPHWLGQATGSLGHWYWWLWGHRSREAGVNILTTCHLPCNPQFREGLTWMVSKTNSLVQ
Nucleotide Sequence CTGTGCTTGCAGCCGGAGTCTTTGAATGGGCAGAGCACCAGGGCGGTGTTACAGCTGTCCTTCAGATGGCCTGGCAGGTCCTCCCGAGCCACAGTGCCCACACCACATTGGTTGGGGCAGGCAACAGGCAGCCTTGGGCACTGGTACTGGTGGCTCTGGGGCCACAGAAGTAGAGAGGCAGGAGTCAATATCCTGACTACCTGTCACCTACCCTGCAACCCACAGTTCAGGGAAGGCCTCACCTGGATGGTGTCAAAGACGAACTCCTTAGTGCAGTAG
CircID chr17:28748289|28748666
ORF Type ORF4
Protein Length 56
Nucleotide Length 171
Protein Sequence MGRAPGRCYSCPSDGLAGPPEPQCPHHIGWGRQQAALGTGTGGSGATEVERQESIS
Nucleotide Sequence ATGGGCAGAGCACCAGGGCGGTGTTACAGCTGTCCTTCAGATGGCCTGGCAGGTCCTCCCGAGCCACAGTGCCCACACCACATTGGTTGGGGCAGGCAACAGGCAGCCTTGGGCACTGGTACTGGTGGCTCTGGGGCCACAGAAGTAGAGAGGCAGGAGTCAATATCCTGA
CircID chr17:28748289|28748666
ORF Type ORF5
Protein Length 46
Nucleotide Length 141
Protein Sequence MMRRLLAQHATSECPKRTQPCTYCTKEFVFDTIQVRPSLNCGLQGR
Nucleotide Sequence ATGATGCGGCGGCTGCTGGCCCAGCATGCCACCTCTGAGTGCCCCAAGCGCACTCAGCCCTGCACCTACTGCACTAAGGAGTTCGTCTTTGACACCATCCAGGTGAGGCCTTCCCTGAACTGTGGGTTGCAGGGTAGGTGA
CircID chr17:28748289|28748666
ORF Type ORF6
Protein Length 63
Nucleotide Length 189
Protein Sequence MTPASLLLWPQSHQYQCPRLPVACPNQCGVGTVAREDLPGHLKDSCNTALVLCPFKDSGCKHR
Nucleotide Sequence TTGACTCCTGCCTCTCTACTTCTGTGGCCCCAGAGCCACCAGTACCAGTGCCCAAGGCTGCCTGTTGCCTGCCCCAACCAATGTGGTGTGGGCACTGTGGCTCGGGAGGACCTGCCAGGCCATCTGAAGGACAGCTGTAACACCGCCCTGGTGCTCTGCCCATTCAAAGACTCCGGCTGCAAGCACAGG
CircID chr17:28748289|28748666
ORF Type ORF7
Protein Length 26
Nucleotide Length 81
Protein Sequence MPPLSAPSALSPAPTALRSSSLTPSR
Nucleotide Sequence ATGCCACCTCTGAGTGCCCCAAGCGCACTCAGCCCTGCACCTACTGCACTAAGGAGTTCGTCTTTGACACCATCCAGGTGA
CircID chr17:28748289|28748666
ORF Type ORF8
Protein Length 39
Nucleotide Length 120
Protein Sequence MPLYFCGPRATSTSAQGCLLPAPTNVVWALWLGRTCQAI
Nucleotide Sequence CTGCCTCTCTACTTCTGTGGCCCCAGAGCCACCAGTACCAGTGCCCAAGGCTGCCTGTTGCCTGCCCCAACCAATGTGGTGTGGGCACTGTGGCTCGGGAGGACCTGCCAGGCCATCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab