CircRNA Information

General Information
circRNA Basic Information
CircID chr17:28749491|28749742
Strand -
CircType exon
Host Gene ENSG00000076604.13;
Algorism CIRI2;
Sequence CAGGACATTCGAAAGCGAAACTATGTGCGGGATGATGCAGTCTTCATCCGTGCTGCTGTTGAACTGCCCCGGAAGATCCTCAGCTGAGTGCAGGTGGGGTTCGAGGGGAAAGGACGATGGGGCATGACCTCAGTCAGGCACTGGCTGAACTTGGAGAGGGGGCCGGACCCCCGTCAGCTGCTTCTGCTGCCTAGGTTCTGTTACCCCATCCTCCCTCCCCCAGCCACCACCCTCAGGTGCCTCCAATTGGTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:28749491|28749742 hsa-miR-15a-5p 0 0 1
chr17:28749491|28749742 hsa-miR-15a-3p 0 0 1
chr17:28749491|28749742 hsa-miR-217-5p 0 0 1
chr17:28749491|28749742 hsa-miR-217-3p 0 0 1
chr17:28749491|28749742 hsa-miR-15b-5p 0 0 1
chr17:28749491|28749742 hsa-miR-15b-3p 0 0 1
chr17:28749491|28749742 hsa-miR-195-5p 0 0 1
chr17:28749491|28749742 hsa-miR-195-3p 0 0 1
chr17:28749491|28749742 hsa-miR-424-5p 0 0 1
chr17:28749491|28749742 hsa-miR-424-3p 0 0 1
chr17:28749491|28749742 hsa-miR-497-5p 0 0 1
chr17:28749491|28749742 hsa-miR-497-3p 0 0 1
chr17:28749491|28749742 hsa-miR-519e-5p 0 0 1
chr17:28749491|28749742 hsa-miR-519e-3p 0 0 1
chr17:28749491|28749742 hsa-miR-575 0 0 1
chr17:28749491|28749742 hsa-miR-625-5p 0 0 1
chr17:28749491|28749742 hsa-miR-625-3p 0 0 1
chr17:28749491|28749742 hsa-miR-637 0 0 1
chr17:28749491|28749742 hsa-miR-646 0 0 1
chr17:28749491|28749742 hsa-miR-650 0 0 1
chr17:28749491|28749742 hsa-miR-421 0 0 1
chr17:28749491|28749742 hsa-miR-298 1 1 1
chr17:28749491|28749742 hsa-miR-922 0 0 1
chr17:28749491|28749742 hsa-miR-940 1 0 1
chr17:28749491|28749742 hsa-miR-1293 0 0 1
chr17:28749491|28749742 hsa-miR-1275 0 1 1
chr17:28749491|28749742 hsa-miR-1321 0 0 1
chr17:28749491|28749742 hsa-miR-1825 0 0 1
chr17:28749491|28749742 hsa-miR-512-5p 0 1 1
chr17:28749491|28749742 hsa-miR-486-3p 0 1 1
chr17:28749491|28749742 hsa-miR-615-5p 0 0 1
chr17:28749491|28749742 hsa-miR-1224-3p 0 1 1
chr17:28749491|28749742 hsa-miR-1207-3p 0 0 1
chr17:28749491|28749742 hsa-miR-515-3p 0 0 1
chr17:28749491|28749742 hsa-miR-515-5p 0 0 1
chr17:28749491|28749742 hsa-miR-550 0 0 1
chr17:28749491|28749742 hsa-miR-16 0 0 1
chr17:28749491|28749742 hsa-miR-768-5p 0 0 1
chr17:28749491|28749742 hsa-miR-1201 0 0 1
chr17:28749491|28749742 hsa-miR-194 0 0 1
chr17:28749491|28749742 hsa-miR-1185 0 0 1
chr17:28749491|28749742 hsa-miR-608 1 1 0
chr17:28749491|28749742 hsa-miR-762 1 0 0
chr17:28749491|28749742 hsa-miR-1268a 1 0 0
chr17:28749491|28749742 hsa-miR-544b 0 1 0
chr17:28749491|28749742 hsa-miR-3612 1 1 0
chr17:28749491|28749742 hsa-miR-3652 1 0 0
chr17:28749491|28749742 hsa-miR-3937 1 0 0
chr17:28749491|28749742 hsa-miR-1268b 1 0 0
chr17:28749491|28749742 hsa-miR-4505 1 0 0
chr17:28749491|28749742 hsa-miR-2392 0 1 0
chr17:28749491|28749742 hsa-miR-4510 0 1 0
chr17:28749491|28749742 hsa-miR-4651 1 0 0
chr17:28749491|28749742 hsa-miR-4706 1 0 0
chr17:28749491|28749742 hsa-miR-4739 1 1 0
chr17:28749491|28749742 hsa-miR-5090 0 1 0
chr17:28749491|28749742 hsa-miR-5698 0 1 0
chr17:28749491|28749742 hsa-miR-5787 1 1 0
chr17:28749491|28749742 hsa-miR-6090 1 0 0
chr17:28749491|28749742 hsa-miR-6127 1 1 0
chr17:28749491|28749742 hsa-miR-6129 0 1 0
chr17:28749491|28749742 hsa-miR-6133 1 1 0
chr17:28749491|28749742 hsa-miR-7150 1 0 0
chr17:28749491|28749742 hsa-miR-8089 1 0 0
chr17:28749491|28749742 hsa-miR-12119 1 0 0
chr17:28749491|28749742 hsa-miR-3157-5p 0 1 0
chr17:28749491|28749742 hsa-miR-7106-5p 1 1 0
chr17:28749491|28749742 hsa-miR-6825-5p 1 0 0
chr17:28749491|28749742 hsa-miR-6894-5p 1 1 0
chr17:28749491|28749742 hsa-miR-766-3p 1 0 0
chr17:28749491|28749742 hsa-miR-486-5p 0 1 0
chr17:28749491|28749742 hsa-miR-6799-5p 1 0 0
chr17:28749491|28749742 hsa-miR-6728-5p 1 0 0
chr17:28749491|28749742 hsa-miR-6804-5p 1 1 0
chr17:28749491|28749742 hsa-miR-6880-5p 1 0 0
chr17:28749491|28749742 hsa-miR-4695-5p 1 0 0
chr17:28749491|28749742 hsa-miR-7160-5p 0 1 0
chr17:28749491|28749742 hsa-miR-6890-5p 0 1 0
chr17:28749491|28749742 hsa-miR-6727-5p 1 0 0
chr17:28749491|28749742 hsa-miR-8069 1 0 0
chr17:28749491|28749742 hsa-miR-3189-5p 0 1 0
chr17:28749491|28749742 hsa-miR-6787-3p 0 1 0
chr17:28749491|28749742 hsa-miR-3605-5p 1 1 0
chr17:28749491|28749742 hsa-miR-6716-5p 1 0 0
chr17:28749491|28749742 hsa-miR-6732-5p 1 0 0
chr17:28749491|28749742 hsa-miR-6798-5p 1 0 0
chr17:28749491|28749742 hsa-miR-6782-5p 1 0 0
chr17:28749491|28749742 hsa-miR-615-3p 1 0 0
chr17:28749491|28749742 hsa-miR-7109-5p 1 0 0
chr17:28749491|28749742 hsa-miR-1226-5p 1 0 0
chr17:28749491|28749742 hsa-miR-4787-5p 0 1 0
chr17:28749491|28749742 hsa-miR-149-3p 1 1 0
chr17:28749491|28749742 hsa-miR-6824-5p 1 0 0
chr17:28749491|28749742 hsa-miR-5010-5p 1 0 0
chr17:28749491|28749742 hsa-miR-5000-5p 0 1 0
chr17:28749491|28749742 hsa-miR-6826-3p 0 1 0
chr17:28749491|28749742 hsa-miR-6795-3p 0 1 0
chr17:28749491|28749742 hsa-miR-6857-3p 0 1 0
chr17:28749491|28749742 hsa-miR-16-5p 0 1 0
chr17:28749491|28749742 hsa-miR-1207-5p 1 0 0
chr17:28749491|28749742 hsa-miR-1233-5p 1 0 0
chr17:28749491|28749742 hsa-miR-4763-3p 1 0 0
chr17:28749491|28749742 hsa-miR-6769b-5p 1 0 0
chr17:28749491|28749742 hsa-miR-6778-5p 1 0 0
chr17:28749491|28749742 hsa-miR-6787-5p 1 0 0
chr17:28749491|28749742 hsa-miR-6812-5p 1 0 0
chr17:28749491|28749742 hsa-miR-6870-5p 1 1 0
chr17:28749491|28749742 hsa-miR-1343-5p 1 0 0
chr17:28749491|28749742 hsa-miR-6752-5p 1 0 0
chr17:28749491|28749742 hsa-miR-6756-5p 1 0 0
chr17:28749491|28749742 hsa-miR-6803-5p 1 1 0
chr17:28749491|28749742 hsa-miR-6819-5p 1 1 0
chr17:28749491|28749742 hsa-miR-6842-5p 1 0 0
chr17:28749491|28749742 hsa-miR-7110-5p 1 0 0
chr17:28749491|28749742 hsa-miR-1249-5p 1 1 0
chr17:28749491|28749742 hsa-miR-6751-5p 1 0 0
chr17:28749491|28749742 hsa-miR-6779-5p 1 0 0
chr17:28749491|28749742 hsa-miR-6780a-5p 1 0 0
chr17:28749491|28749742 hsa-miR-6797-5p 1 1 0
chr17:28749491|28749742 hsa-miR-7111-5p 1 1 0
chr17:28749491|28749742 hsa-miR-4728-5p 1 1 0
chr17:28749491|28749742 hsa-miR-6780b-5p 1 0 0
chr17:28749491|28749742 hsa-miR-1237-5p 1 0 0
chr17:28749491|28749742 hsa-miR-328-5p 1 0 0
chr17:28749491|28749742 hsa-miR-4649-5p 1 0 0
chr17:28749491|28749742 hsa-miR-6729-5p 1 0 0
chr17:28749491|28749742 hsa-miR-6795-5p 1 0 0
chr17:28749491|28749742 hsa-miR-6846-5p 1 0 0
chr17:28749491|28749742 hsa-miR-6848-5p 1 0 0
chr17:28749491|28749742 hsa-miR-6883-5p 1 1 0
chr17:28749491|28749742 hsa-miR-6887-5p 1 0 0
chr17:28749491|28749742 hsa-miR-3187-5p 1 1 0
chr17:28749491|28749742 hsa-miR-4723-5p 0 1 0
chr17:28749491|28749742 hsa-miR-939-5p 1 0 0
chr17:28749491|28749742 hsa-miR-34b-5p 0 1 0
chr17:28749491|28749742 hsa-miR-6511b-5p 1 0 0
chr17:28749491|28749742 hsa-miR-6856-5p 1 0 0
chr17:28749491|28749742 hsa-miR-3679-5p 1 0 0
chr17:28749491|28749742 hsa-miR-6766-5p 0 1 0
chr17:28749491|28749742 hsa-miR-6785-5p 1 1 0
chr17:28749491|28749742 hsa-miR-4667-5p 1 0 0
chr17:28749491|28749742 hsa-miR-6791-5p 1 0 0
chr17:28749491|28749742 hsa-miR-550a-3-5p 0 1 0
chr17:28749491|28749742 hsa-miR-550a-5p 0 1 0
chr17:28749491|28749742 hsa-miR-10392-3p 0 1 0
chr17:28749491|28749742 hsa-miR-6838-5p 0 1 0
chr17:28749491|28749742 hsa-miR-6807-3p 0 1 0
chr17:28749491|28749742 hsa-miR-6855-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr17:28749491|28749742
ORF Type ORF1
Protein Length 43
Nucleotide Length 129
Protein Sequence MTSVRHWLNLERGPDPRQLLLLPRFCYPILPPPATTLRCLQLV
Nucleotide Sequence ATGACCTCAGTCAGGCACTGGCTGAACTTGGAGAGGGGGCCGGACCCCCGTCAGCTGCTTCTGCTGCCTAGGTTCTGTTACCCCATCCTCCCTCCCCCAGCCACCACCCTCAGGTGCCTCCAATTGGTG
CircID chr17:28749491|28749742
ORF Type ORF2
Protein Length 34
Nucleotide Length 105
Protein Sequence MCGMMQSSSVLLLNCPGRSSAECRWGSRGKDDGA
Nucleotide Sequence ATGTGCGGGATGATGCAGTCTTCATCCGTGCTGCTGTTGAACTGCCCCGGAAGATCCTCAGCTGAGTGCAGGTGGGGTTCGAGGGGAAAGGACGATGGGGCATGA
CircID chr17:28749491|28749742
ORF Type ORF3
Protein Length 36
Nucleotide Length 111
Protein Sequence MSAGGVRGERTMGHDLSQALAELGEGAGPPSAASAA
Nucleotide Sequence CTGAGTGCAGGTGGGGTTCGAGGGGAAAGGACGATGGGGCATGACCTCAGTCAGGCACTGGCTGAACTTGGAGAGGGGGCCGGACCCCCGTCAGCTGCTTCTGCTGCCTAG
CircID chr17:28749491|28749742
ORF Type ORF4
Protein Length 38
Nucleotide Length 117
Protein Sequence MEAPEGGGWGREDGVTEPRQQKQLTGVRPPLQVQPVPD
Nucleotide Sequence TTGGAGGCACCTGAGGGTGGTGGCTGGGGGAGGGAGGATGGGGTAACAGAACCTAGGCAGCAGAAGCAGCTGACGGGGGTCCGGCCCCCTCTCCAAGTTCAGCCAGTGCCTGACTGA
CircID chr17:28749491|28749742
ORF Type ORF5
Protein Length 31
Nucleotide Length 93
Protein Sequence MHSAEDLPGQFNSSTDEDCIIPHIVSLSNVL
Nucleotide Sequence CTGCACTCAGCTGAGGATCTTCCGGGGCAGTTCAACAGCAGCACGGATGAAGACTGCATCATCCCGCACATAGTTTCGCTTTCGAATGTCCTG
CircID chr17:28749491|28749742
ORF Type ORF6
Protein Length 38
Nucleotide Length 117
Protein Sequence MTEVMPHRPFPSNPTCTQLRIFRGSSTAARMKTASSRT
Nucleotide Sequence CTGACTGAGGTCATGCCCCATCGTCCTTTCCCCTCGAACCCCACCTGCACTCAGCTGAGGATCTTCCGGGGCAGTTCAACAGCAGCACGGATGAAGACTGCATCATCCCGCACATAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab