CircRNA Information

General Information
circRNA Basic Information
CircID chr17:28759056|28759166
Strand +
CircType exon
Host Gene ENSG00000173065.12;
Algorism CIRI2;
Sequence CTGAGTAGCATCGTGCACCAGATCAACCAGTTTTGCCAGACGAGGGCAGGCATCAGCACTACCTCAGTGTGTGAGGGCCAGATCGCCAACCCCAGCCCCATTAGTCGCAGT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:28759056|28759166 hsa-let-7b-5p 0 0 1
chr17:28759056|28759166 hsa-let-7b-3p 0 0 1
chr17:28759056|28759166 hsa-let-7c-5p 0 0 1
chr17:28759056|28759166 hsa-let-7c-3p 0 0 1
chr17:28759056|28759166 hsa-let-7d-5p 0 0 1
chr17:28759056|28759166 hsa-let-7d-3p 0 0 1
chr17:28759056|28759166 hsa-let-7e-5p 0 0 1
chr17:28759056|28759166 hsa-let-7e-3p 0 0 1
chr17:28759056|28759166 hsa-miR-98-5p 0 0 1
chr17:28759056|28759166 hsa-miR-98-3p 0 0 1
chr17:28759056|28759166 hsa-let-7g-5p 0 0 1
chr17:28759056|28759166 hsa-let-7g-3p 0 0 1
chr17:28759056|28759166 hsa-let-7i-5p 0 0 1
chr17:28759056|28759166 hsa-let-7i-3p 0 0 1
chr17:28759056|28759166 hsa-miR-377-5p 0 0 1
chr17:28759056|28759166 hsa-miR-377-3p 0 0 1
chr17:28759056|28759166 hsa-miR-328-5p 0 0 1
chr17:28759056|28759166 hsa-miR-328-3p 0 0 1
chr17:28759056|28759166 hsa-miR-196b-5p 0 0 1
chr17:28759056|28759166 hsa-miR-196b-3p 0 0 1
chr17:28759056|28759166 hsa-miR-202-5p 0 0 1
chr17:28759056|28759166 hsa-miR-202-3p 0 0 1
chr17:28759056|28759166 hsa-miR-520f-5p 0 0 1
chr17:28759056|28759166 hsa-miR-520f-3p 0 0 1
chr17:28759056|28759166 hsa-miR-510-5p 0 0 1
chr17:28759056|28759166 hsa-miR-510-3p 0 0 1
chr17:28759056|28759166 hsa-miR-563 0 0 1
chr17:28759056|28759166 hsa-miR-603 0 0 1
chr17:28759056|28759166 hsa-miR-1323 0 0 1
chr17:28759056|28759166 hsa-miR-548e-5p 0 0 1
chr17:28759056|28759166 hsa-miR-548e-3p 0 0 1
chr17:28759056|28759166 hsa-miR-1291 0 0 1
chr17:28759056|28759166 hsa-miR-548o-3p 0 0 1
chr17:28759056|28759166 hsa-miR-548o 0 0 1
chr17:28759056|28759166 hsa-miR-512-5p 0 0 1
chr17:28759056|28759166 hsa-miR-512-3p 0 0 1
chr17:28759056|28759166 hsa-miR-582-3p 0 1 1
chr17:28759056|28759166 hsa-miR-342-3p 0 0 1
chr17:28759056|28759166 hsa-miR-548a-3p 0 0 1
chr17:28759056|28759166 hsa-miR-548f 0 0 1
chr17:28759056|28759166 hsa-let-7a 0 0 1
chr17:28759056|28759166 hsa-let-7f 0 0 1
chr17:28759056|28759166 hsa-miR-196a 0 0 1
chr17:28759056|28759166 hsa-miR-762 1 1 0
chr17:28759056|28759166 hsa-miR-2861 1 0 0
chr17:28759056|28759166 hsa-miR-4498 1 0 0
chr17:28759056|28759166 hsa-miR-4505 0 1 0
chr17:28759056|28759166 hsa-miR-4508 1 0 0
chr17:28759056|28759166 hsa-miR-4513 1 0 0
chr17:28759056|28759166 hsa-miR-1587 1 0 0
chr17:28759056|28759166 hsa-miR-4656 1 0 0
chr17:28759056|28759166 hsa-miR-5190 1 0 0
chr17:28759056|28759166 hsa-miR-5787 1 0 0
chr17:28759056|28759166 hsa-miR-6085 1 0 0
chr17:28759056|28759166 hsa-miR-8074 1 0 0
chr17:28759056|28759166 hsa-miR-8075 0 1 0
chr17:28759056|28759166 hsa-miR-12115 1 0 0
chr17:28759056|28759166 hsa-miR-6747-3p 0 1 0
chr17:28759056|28759166 hsa-miR-3151-5p 1 0 0
chr17:28759056|28759166 hsa-miR-185-3p 1 1 0
chr17:28759056|28759166 hsa-miR-4655-3p 0 1 0
chr17:28759056|28759166 hsa-miR-6894-3p 0 1 0
chr17:28759056|28759166 hsa-miR-296-3p 1 0 0
chr17:28759056|28759166 hsa-miR-194-3p 1 0 0
chr17:28759056|28759166 hsa-miR-3126-3p 0 1 0
chr17:28759056|28759166 hsa-miR-3675-5p 0 1 0
chr17:28759056|28759166 hsa-miR-4763-3p 1 0 0
chr17:28759056|28759166 hsa-miR-6787-5p 1 0 0
chr17:28759056|28759166 hsa-miR-6816-5p 1 0 0
chr17:28759056|28759166 hsa-miR-6756-5p 1 0 0
chr17:28759056|28759166 hsa-miR-6803-5p 1 0 0
chr17:28759056|28759166 hsa-miR-6813-5p 1 1 0
chr17:28759056|28759166 hsa-miR-6751-5p 1 1 0
chr17:28759056|28759166 hsa-miR-3620-5p 1 0 0
chr17:28759056|28759166 hsa-miR-4745-5p 1 0 0
chr17:28759056|28759166 hsa-miR-6846-5p 1 0 0
chr17:28759056|28759166 hsa-miR-6848-5p 1 1 0
chr17:28759056|28759166 hsa-miR-3940-5p 1 0 0
chr17:28759056|28759166 hsa-miR-6855-5p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr17:28759056|28759166
ORF Type ORF1
Protein Length 37
Nucleotide Length 111
Protein Sequence LSSIVHQINQFCQTRAGISTTSVCEGQIANPSPISRS
Nucleotide Sequence CTGAGTAGCATCGTGCACCAGATCAACCAGTTTTGCCAGACGAGGGCAGGCATCAGCACTACCTCAGTGTGTGAGGGCCAGATCGCCAACCCCAGCCCCATTAGTCGCAGT
CircID chr17:28759056|28759166
ORF Type ORF2
Protein Length 36
Nucleotide Length 108
Protein Sequence LRLMGLGLAIWPSHTEVVLMPALVWQNWLIWCTMLL
Nucleotide Sequence CTGCGACTAATGGGGCTGGGGTTGGCGATCTGGCCCTCACACACTGAGGTAGTGCTGATGCCTGCCCTCGTCTGGCAAAACTGGTTGATCTGGTGCACGATGCTACTC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab