CircRNA Information

General Information
circRNA Basic Information
CircID chr17:28879480|28879732
Strand -
CircType exon
Host Gene ENSG00000132589.14;
Algorism CIRI2;
Sequence CACTGGACATTCACAGCACCCCTGCCAAGACGCTTGGGTCCTGGGCTCTTCTGCCTCCATTGGAGCAAGGAGACAGAGGATTGGGTTGCTTCCCCATGGCTGGAACCCCATCACTCTGGCCAGGAAGAAAGATGGCACAAGGGCTCTGGGGTCTGGCCAGGCTACAGCACTCGATTCTGTACAGGGTTGGCACAGCCTTGTCCACCAGAAGGGCCCAACACCCAGGACAGTGCAGCCCTAGCAGGAAGAAGGT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:28879480|28879732 hsa-miR-198 0 0 1
chr17:28879480|28879732 hsa-miR-10a-5p 0 0 1
chr17:28879480|28879732 hsa-miR-10a-3p 0 0 1
chr17:28879480|28879732 hsa-miR-10b-5p 0 0 1
chr17:28879480|28879732 hsa-miR-10b-3p 0 0 1
chr17:28879480|28879732 hsa-miR-370-5p 0 0 1
chr17:28879480|28879732 hsa-miR-370-3p 0 0 1
chr17:28879480|28879732 hsa-miR-596 0 0 1
chr17:28879480|28879732 hsa-miR-609 0 0 1
chr17:28879480|28879732 hsa-miR-650 0 1 1
chr17:28879480|28879732 hsa-miR-298 0 0 1
chr17:28879480|28879732 hsa-miR-1227-5p 0 0 1
chr17:28879480|28879732 hsa-miR-1227-3p 0 0 1
chr17:28879480|28879732 hsa-miR-1237-5p 0 0 1
chr17:28879480|28879732 hsa-miR-1237-3p 0 0 1
chr17:28879480|28879732 hsa-miR-1248 0 1 1
chr17:28879480|28879732 hsa-miR-1257 0 0 1
chr17:28879480|28879732 hsa-miR-1825 0 0 1
chr17:28879480|28879732 hsa-miR-1827 0 0 1
chr17:28879480|28879732 hsa-miR-486-5p 0 1 1
chr17:28879480|28879732 hsa-miR-296-5p 0 0 1
chr17:28879480|28879732 hsa-miR-512-3p 0 0 1
chr17:28879480|28879732 hsa-miR-199a-5p 0 0 1
chr17:28879480|28879732 hsa-miR-502-5p 0 1 1
chr17:28879480|28879732 hsa-miR-199b-5p 0 0 1
chr17:28879480|28879732 hsa-miR-1207-5p 1 1 1
chr17:28879480|28879732 hsa-miR-342-5p 0 1 1
chr17:28879480|28879732 hsa-miR-1233 0 0 1
chr17:28879480|28879732 hsa-miR-129-3p 0 0 1
chr17:28879480|28879732 hsa-miR-611 1 0 0
chr17:28879480|28879732 hsa-miR-631 1 0 0
chr17:28879480|28879732 hsa-miR-1182 1 0 0
chr17:28879480|28879732 hsa-miR-663b 1 0 0
chr17:28879480|28879732 hsa-miR-1261 0 1 0
chr17:28879480|28879732 hsa-miR-2110 0 1 0
chr17:28879480|28879732 hsa-miR-3137 0 1 0
chr17:28879480|28879732 hsa-miR-3147 1 0 0
chr17:28879480|28879732 hsa-miR-3170 0 1 0
chr17:28879480|28879732 hsa-miR-4651 1 0 0
chr17:28879480|28879732 hsa-miR-4675 0 1 0
chr17:28879480|28879732 hsa-miR-4765 0 1 0
chr17:28879480|28879732 hsa-miR-6069 1 0 0
chr17:28879480|28879732 hsa-miR-6860 1 1 0
chr17:28879480|28879732 hsa-miR-7150 0 1 0
chr17:28879480|28879732 hsa-miR-4435 0 1 0
chr17:28879480|28879732 hsa-miR-6840-3p 1 1 0
chr17:28879480|28879732 hsa-miR-6720-5p 0 1 0
chr17:28879480|28879732 hsa-miR-8071 0 1 0
chr17:28879480|28879732 hsa-miR-6089 1 0 0
chr17:28879480|28879732 hsa-miR-6875-3p 0 1 0
chr17:28879480|28879732 hsa-miR-23b-5p 0 1 0
chr17:28879480|28879732 hsa-miR-23a-5p 0 1 0
chr17:28879480|28879732 hsa-miR-6782-5p 0 1 0
chr17:28879480|28879732 hsa-miR-4793-3p 0 1 0
chr17:28879480|28879732 hsa-miR-6780a-3p 0 1 0
chr17:28879480|28879732 hsa-miR-4446-3p 0 1 0
chr17:28879480|28879732 hsa-miR-6742-3p 0 1 0
chr17:28879480|28879732 hsa-miR-6828-5p 0 1 0
chr17:28879480|28879732 hsa-miR-3190-5p 0 1 0
chr17:28879480|28879732 hsa-miR-4778-3p 0 1 0
chr17:28879480|28879732 hsa-miR-2355-3p 0 1 0
chr17:28879480|28879732 hsa-miR-2276-5p 0 1 0
chr17:28879480|28879732 hsa-miR-3074-5p 0 1 0
chr17:28879480|28879732 hsa-miR-5088-3p 0 1 0
chr17:28879480|28879732 hsa-miR-5189-3p 1 1 0
chr17:28879480|28879732 hsa-miR-6780b-3p 0 1 0
chr17:28879480|28879732 hsa-miR-4802-5p 0 1 0
chr17:28879480|28879732 hsa-miR-6888-3p 0 1 0
chr17:28879480|28879732 hsa-miR-4763-3p 1 1 0
chr17:28879480|28879732 hsa-miR-6787-5p 1 0 0
chr17:28879480|28879732 hsa-miR-6722-3p 1 1 0
chr17:28879480|28879732 hsa-miR-3620-5p 0 1 0
chr17:28879480|28879732 hsa-miR-6836-5p 1 0 0
chr17:28879480|28879732 hsa-miR-328-5p 1 0 0
chr17:28879480|28879732 hsa-miR-4632-5p 1 0 0
chr17:28879480|28879732 hsa-miR-4685-5p 1 0 0
chr17:28879480|28879732 hsa-miR-6848-5p 1 0 0
chr17:28879480|28879732 hsa-miR-1910-3p 0 1 0
chr17:28879480|28879732 hsa-miR-6511a-5p 0 1 0
chr17:28879480|28879732 hsa-miR-3085-5p 1 0 0
chr17:28879480|28879732 hsa-miR-6724-5p 1 1 0
chr17:28879480|28879732 hsa-miR-10400-3p 1 0 0
chr17:28879480|28879732 hsa-miR-6837-5p 1 0 0
chr17:28879480|28879732 hsa-miR-6529-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:28879480|28879732
ORF Type ORF1
Protein Length 77
Nucleotide Length 231
Protein Sequence MPRRLGPGLFCLHWSKETEDWVASPWLEPHHSGQEERWHKGSGVWPGYSTRFCTGLAQPCPPEGPNTQDSAALAGRR
Nucleotide Sequence CTGCCAAGACGCTTGGGTCCTGGGCTCTTCTGCCTCCATTGGAGCAAGGAGACAGAGGATTGGGTTGCTTCCCCATGGCTGGAACCCCATCACTCTGGCCAGGAAGAAAGATGGCACAAGGGCTCTGGGGTCTGGCCAGGCTACAGCACTCGATTCTGTACAGGGTTGGCACAGCCTTGTCCACCAGAAGGGCCCAACACCCAGGACAGTGCAGCCCTAGCAGGAAGAAGG
CircID chr17:28879480|28879732
ORF Type ORF2
Protein Length 66
Nucleotide Length 201
Protein Sequence MGSSASIGARRQRIGLLPHGWNPITLARKKDGTRALGSGQATALDSVQGWHSLVHQKGPTPRTVQP
Nucleotide Sequence CTGGGCTCTTCTGCCTCCATTGGAGCAAGGAGACAGAGGATTGGGTTGCTTCCCCATGGCTGGAACCCCATCACTCTGGCCAGGAAGAAAGATGGCACAAGGGCTCTGGGGTCTGGCCAGGCTACAGCACTCGATTCTGTACAGGGTTGGCACAGCCTTGTCCACCAGAAGGGCCCAACACCCAGGACAGTGCAGCCCTAG
CircID chr17:28879480|28879732
ORF Type ORF3
Protein Length 83
Nucleotide Length 249
Protein Sequence LDIHSTPAKTLGSWALLPPLEQGDRGLGCFPMAGTPSLWPGRKMAQGLWGLARLQHSILYRVGTALSTRRAQHPGQCSPSRKK
Nucleotide Sequence CTGGACATTCACAGCACCCCTGCCAAGACGCTTGGGTCCTGGGCTCTTCTGCCTCCATTGGAGCAAGGAGACAGAGGATTGGGTTGCTTCCCCATGGCTGGAACCCCATCACTCTGGCCAGGAAGAAAGATGGCACAAGGGCTCTGGGGTCTGGCCAGGCTACAGCACTCGATTCTGTACAGGGTTGGCACAGCCTTGTCCACCAGAAGGGCCCAACACCCAGGACAGTGCAGCCCTAGCAGGAAGAAG
CircID chr17:28879480|28879732
ORF Type ORF4
Protein Length 77
Nucleotide Length 234
Protein Sequence MLGLHCPGCWALLVDKAVPTLYRIECCSLARPQSPCAIFLPGQSDGVPAMGKQPNPLSPCSNGGRRAQDPSVLAGVL
Nucleotide Sequence CTGCTAGGGCTGCACTGTCCTGGGTGTTGGGCCCTTCTGGTGGACAAGGCTGTGCCAACCCTGTACAGAATCGAGTGCTGTAGCCTGGCCAGACCCCAGAGCCCTTGTGCCATCTTTCTTCCTGGCCAGAGTGATGGGGTTCCAGCCATGGGGAAGCAACCCAATCCTCTGTCTCCTTGCTCCAATGGAGGCAGAAGAGCCCAGGACCCAAGCGTCTTGGCAGGGGTGCTGTGA
CircID chr17:28879480|28879732
ORF Type ORF5
Protein Length 75
Nucleotide Length 225
Protein Sequence MGVGPFWWTRLCQPCTESSAVAWPDPRALVPSFFLARVMGFQPWGSNPILCLLAPMEAEEPRTQASWQGCCECPV
Nucleotide Sequence CTGGGTGTTGGGCCCTTCTGGTGGACAAGGCTGTGCCAACCCTGTACAGAATCGAGTGCTGTAGCCTGGCCAGACCCCAGAGCCCTTGTGCCATCTTTCTTCCTGGCCAGAGTGATGGGGTTCCAGCCATGGGGAAGCAACCCAATCCTCTGTCTCCTTGCTCCAATGGAGGCAGAAGAGCCCAGGACCCAAGCGTCTTGGCAGGGGTGCTGTGAATGTCCAGTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab