CircRNA Information

General Information
circRNA Basic Information
CircID chr17:28880199|28880426
Strand -
CircType exon
Host Gene ENSG00000132589.14;
Algorism CIRI2;
Sequence CAGGATTCTGAGGAGCAGCAGGGCCACCCCCCACAGAGAGTGATTGTAATAAACATCTTCAGCTTAATCTACATGATGTGCATGGGGGAAAGAAAAAGACAGACAAAGGAAAAGACACGCAGGGAGATGAGACACAAACCTGATGAAAGTGGCAGTGAAAGTGGGGTAAAGGAGAGGAAGAGGAGGAGGTGGACAGACAGGAGAGACAGGAAGACAGCCAGAGATGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:28880199|28880426 hsa-miR-187-5p 0 0 1
chr17:28880199|28880426 hsa-miR-187-3p 0 0 1
chr17:28880199|28880426 hsa-miR-149-5p 0 0 1
chr17:28880199|28880426 hsa-miR-149-3p 0 0 1
chr17:28880199|28880426 hsa-miR-34b-5p 0 0 1
chr17:28880199|28880426 hsa-miR-34b-3p 0 0 1
chr17:28880199|28880426 hsa-miR-370-5p 0 0 1
chr17:28880199|28880426 hsa-miR-370-3p 0 0 1
chr17:28880199|28880426 hsa-miR-328-5p 0 0 1
chr17:28880199|28880426 hsa-miR-328-3p 0 0 1
chr17:28880199|28880426 hsa-miR-326 1 0 1
chr17:28880199|28880426 hsa-miR-511-5p 0 0 1
chr17:28880199|28880426 hsa-miR-511-3p 0 0 1
chr17:28880199|28880426 hsa-miR-592 0 0 1
chr17:28880199|28880426 hsa-miR-593-5p 0 0 1
chr17:28880199|28880426 hsa-miR-593-3p 0 0 1
chr17:28880199|28880426 hsa-miR-599 0 0 1
chr17:28880199|28880426 hsa-miR-608 1 0 1
chr17:28880199|28880426 hsa-miR-626 0 0 1
chr17:28880199|28880426 hsa-miR-632 0 0 1
chr17:28880199|28880426 hsa-miR-1231 0 0 1
chr17:28880199|28880426 hsa-miR-1236-5p 0 0 1
chr17:28880199|28880426 hsa-miR-1236-3p 0 0 1
chr17:28880199|28880426 hsa-miR-663b 1 0 1
chr17:28880199|28880426 hsa-miR-1291 1 0 1
chr17:28880199|28880426 hsa-miR-491-5p 0 0 1
chr17:28880199|28880426 hsa-miR-361-3p 0 0 1
chr17:28880199|28880426 hsa-miR-330-5p 0 0 1
chr17:28880199|28880426 hsa-miR-556-3p 0 0 1
chr17:28880199|28880426 hsa-miR-346 1 0 0
chr17:28880199|28880426 hsa-miR-1260a 1 0 0
chr17:28880199|28880426 hsa-miR-1281 1 0 0
chr17:28880199|28880426 hsa-miR-1539 1 0 0
chr17:28880199|28880426 hsa-miR-1976 1 0 0
chr17:28880199|28880426 hsa-miR-3183 1 0 0
chr17:28880199|28880426 hsa-miR-4297 1 0 0
chr17:28880199|28880426 hsa-miR-4326 1 0 0
chr17:28880199|28880426 hsa-miR-4268 1 0 0
chr17:28880199|28880426 hsa-miR-4279 1 0 0
chr17:28880199|28880426 hsa-miR-4286 1 0 0
chr17:28880199|28880426 hsa-miR-4421 1 0 0
chr17:28880199|28880426 hsa-miR-5193 1 0 0
chr17:28880199|28880426 hsa-miR-7974 1 0 0
chr17:28880199|28880426 hsa-miR-103a-2-5p 1 0 0
chr17:28880199|28880426 hsa-miR-197-3p 1 0 0
chr17:28880199|28880426 hsa-miR-6749-3p 1 0 0
chr17:28880199|28880426 hsa-miR-214-5p 1 0 0
chr17:28880199|28880426 hsa-miR-3194-3p 1 0 0
chr17:28880199|28880426 hsa-miR-6892-3p 1 0 0
chr17:28880199|28880426 hsa-miR-6881-3p 1 0 0
chr17:28880199|28880426 hsa-miR-874-5p 1 0 0
chr17:28880199|28880426 hsa-miR-6875-3p 1 0 0
chr17:28880199|28880426 hsa-miR-6842-3p 1 0 0
chr17:28880199|28880426 hsa-miR-4677-5p 1 0 0
chr17:28880199|28880426 hsa-miR-6873-3p 1 0 0
chr17:28880199|28880426 hsa-miR-7110-3p 1 0 0
chr17:28880199|28880426 hsa-miR-1915-5p 1 0 0
chr17:28880199|28880426 hsa-miR-6845-3p 1 0 0
chr17:28880199|28880426 hsa-miR-6742-5p 1 0 0
chr17:28880199|28880426 hsa-miR-877-3p 1 0 0
chr17:28880199|28880426 hsa-miR-6868-3p 1 0 0
chr17:28880199|28880426 hsa-miR-6732-5p 1 0 0
chr17:28880199|28880426 hsa-miR-6788-3p 1 0 0
chr17:28880199|28880426 hsa-miR-6740-3p 1 0 0
chr17:28880199|28880426 hsa-miR-4713-5p 1 0 0
chr17:28880199|28880426 hsa-miR-4436b-5p 1 0 0
chr17:28880199|28880426 hsa-miR-6884-3p 1 0 0
chr17:28880199|28880426 hsa-miR-6772-3p 1 0 0
chr17:28880199|28880426 hsa-miR-7109-5p 1 0 0
chr17:28880199|28880426 hsa-miR-3944-3p 1 0 0
chr17:28880199|28880426 hsa-miR-5010-3p 1 0 0
chr17:28880199|28880426 hsa-miR-5001-3p 1 0 0
chr17:28880199|28880426 hsa-miR-7113-3p 1 0 0
chr17:28880199|28880426 hsa-miR-3667-3p 1 0 0
chr17:28880199|28880426 hsa-miR-3191-5p 1 0 0
chr17:28880199|28880426 hsa-miR-4743-3p 1 0 0
chr17:28880199|28880426 hsa-miR-6818-3p 1 0 0
chr17:28880199|28880426 hsa-miR-6809-3p 1 0 0
chr17:28880199|28880426 hsa-miR-7111-3p 1 0 0
chr17:28880199|28880426 hsa-miR-6780a-3p 1 0 0
chr17:28880199|28880426 hsa-miR-6830-3p 1 0 0
chr17:28880199|28880426 hsa-miR-4787-5p 1 0 0
chr17:28880199|28880426 hsa-miR-1266-3p 1 0 0
chr17:28880199|28880426 hsa-miR-4667-3p 1 0 0
chr17:28880199|28880426 hsa-miR-4446-5p 1 0 0
chr17:28880199|28880426 hsa-miR-378a-5p 1 0 0
chr17:28880199|28880426 hsa-miR-6736-3p 1 0 0
chr17:28880199|28880426 hsa-miR-146b-3p 1 0 0
chr17:28880199|28880426 hsa-miR-1306-5p 1 0 0
chr17:28880199|28880426 hsa-miR-4646-3p 1 0 0
chr17:28880199|28880426 hsa-miR-1237-3p 1 0 0
chr17:28880199|28880426 hsa-miR-6743-3p 1 0 0
chr17:28880199|28880426 hsa-miR-3120-5p 1 0 0
chr17:28880199|28880426 hsa-miR-7106-3p 1 0 0
chr17:28880199|28880426 hsa-miR-4758-3p 1 0 0
chr17:28880199|28880426 hsa-miR-4778-3p 1 0 0
chr17:28880199|28880426 hsa-miR-1238-3p 1 0 0
chr17:28880199|28880426 hsa-miR-6867-3p 1 0 0
chr17:28880199|28880426 hsa-miR-4664-3p 1 0 0
chr17:28880199|28880426 hsa-miR-1224-3p 1 0 0
chr17:28880199|28880426 hsa-miR-6782-3p 1 0 0
chr17:28880199|28880426 hsa-miR-6895-3p 1 0 0
chr17:28880199|28880426 hsa-miR-7151-5p 1 0 0
chr17:28880199|28880426 hsa-miR-6758-3p 1 0 0
chr17:28880199|28880426 hsa-miR-6865-3p 1 0 0
chr17:28880199|28880426 hsa-miR-6826-3p 1 0 0
chr17:28880199|28880426 hsa-miR-1914-5p 1 0 0
chr17:28880199|28880426 hsa-miR-6886-3p 1 0 0
chr17:28880199|28880426 hsa-miR-5088-3p 1 0 0
chr17:28880199|28880426 hsa-miR-6773-3p 1 0 0
chr17:28880199|28880426 hsa-miR-6738-3p 1 0 0
chr17:28880199|28880426 hsa-miR-875-5p 1 0 0
chr17:28880199|28880426 hsa-miR-6880-3p 1 0 0
chr17:28880199|28880426 hsa-miR-204-5p 1 0 0
chr17:28880199|28880426 hsa-miR-130b-5p 1 0 0
chr17:28880199|28880426 hsa-miR-6748-3p 1 0 0
chr17:28880199|28880426 hsa-miR-7152-5p 1 0 0
chr17:28880199|28880426 hsa-miR-1255b-2-3p 1 0 0
chr17:28880199|28880426 hsa-miR-6851-3p 1 0 0
chr17:28880199|28880426 hsa-miR-3173-5p 1 0 0
chr17:28880199|28880426 hsa-miR-6734-3p 1 0 0
chr17:28880199|28880426 hsa-miR-6515-3p 1 0 0
chr17:28880199|28880426 hsa-miR-6780b-3p 1 0 0
chr17:28880199|28880426 hsa-miR-6800-3p 1 0 0
chr17:28880199|28880426 hsa-miR-6890-3p 1 0 0
chr17:28880199|28880426 hsa-miR-6888-3p 1 0 0
chr17:28880199|28880426 hsa-miR-5587-5p 1 0 0
chr17:28880199|28880426 hsa-miR-4520-5p 1 0 0
chr17:28880199|28880426 hsa-miR-320a-5p 1 0 0
chr17:28880199|28880426 hsa-miR-4755-5p 1 0 0
chr17:28880199|28880426 hsa-miR-6754-3p 1 0 0
chr17:28880199|28880426 hsa-miR-4745-3p 1 0 0
chr17:28880199|28880426 hsa-miR-6791-3p 1 0 0
chr17:28880199|28880426 hsa-miR-324-3p 1 0 0
chr17:28880199|28880426 hsa-miR-2682-3p 1 0 0
chr17:28880199|28880426 hsa-miR-6753-3p 1 0 0
chr17:28880199|28880426 hsa-miR-6893-3p 1 0 0
chr17:28880199|28880426 hsa-miR-6756-3p 1 0 0
chr17:28880199|28880426 hsa-miR-6792-3p 1 0 0
chr17:28880199|28880426 hsa-miR-6810-3p 1 0 0
chr17:28880199|28880426 hsa-miR-6829-3p 1 0 0
chr17:28880199|28880426 hsa-miR-6775-3p 1 0 0
chr17:28880199|28880426 hsa-miR-11181-5p 1 0 0
chr17:28880199|28880426 hsa-miR-3059-5p 1 0 0
chr17:28880199|28880426 hsa-miR-4723-3p 1 0 0
chr17:28880199|28880426 hsa-miR-6769b-3p 1 0 0
chr17:28880199|28880426 hsa-miR-6891-3p 1 0 0
chr17:28880199|28880426 hsa-miR-4701-5p 1 0 0
chr17:28880199|28880426 hsa-miR-4691-5p 1 0 0
chr17:28880199|28880426 hsa-miR-4768-5p 1 0 0
chr17:28880199|28880426 hsa-miR-6876-3p 1 0 0
chr17:28880199|28880426 hsa-miR-6827-3p 1 0 0
chr17:28880199|28880426 hsa-miR-103a-1-5p 1 0 0
chr17:28880199|28880426 hsa-miR-6833-3p 1 0 0
chr17:28880199|28880426 hsa-miR-6824-3p 1 0 0
chr17:28880199|28880426 hsa-miR-494-5p 1 0 0
chr17:28880199|28880426 hsa-miR-5699-3p 1 0 0
chr17:28880199|28880426 hsa-miR-412-3p 1 0 0
chr17:28880199|28880426 hsa-miR-4676-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:28880199|28880426
ORF Type ORF1
Protein Length 52
Nucleotide Length 156
Protein Sequence MMCMGERKRQTKEKTRREMRHKPDESGSESGVKERKRRRWTDRRDRKTARDG
Nucleotide Sequence ATGATGTGCATGGGGGAAAGAAAAAGACAGACAAAGGAAAAGACACGCAGGGAGATGAGACACAAACCTGATGAAAGTGGCAGTGAAAGTGGGGTAAAGGAGAGGAAGAGGAGGAGGTGGACAGACAGGAGAGACAGGAAGACAGCCAGAGATGGC
CircID chr17:28880199|28880426
ORF Type ORF2
Protein Length 50
Nucleotide Length 153
Protein Sequence MAVFLSLLSVHLLLFLSFTPLSLPLSSGLCLISLRVFSFVCLFLSPMHIM
Nucleotide Sequence CTGGCTGTCTTCCTGTCTCTCCTGTCTGTCCACCTCCTCCTCTTCCTCTCCTTTACCCCACTTTCACTGCCACTTTCATCAGGTTTGTGTCTCATCTCCCTGCGTGTCTTTTCCTTTGTCTGTCTTTTTCTTTCCCCCATGCACATCATGTAG
CircID chr17:28880199|28880426
ORF Type ORF3
Protein Length 52
Nucleotide Length 159
Protein Sequence MSSCLSCLSTSSSSSPLPHFHCHFHQVCVSSPCVSFPLSVFFFPPCTSCRLS
Nucleotide Sequence CTGTCTTCCTGTCTCTCCTGTCTGTCCACCTCCTCCTCTTCCTCTCCTTTACCCCACTTTCACTGCCACTTTCATCAGGTTTGTGTCTCATCTCCCTGCGTGTCTTTTCCTTTGTCTGTCTTTTTCTTTCCCCCATGCACATCATGTAGATTAAGCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab