CircRNA Information

General Information
circRNA Basic Information
CircID chr17:28912905|28913111
Strand +
CircType exon
Host Gene ENSG00000109118.12;
Algorism CIRI2;
Sequence CTACACCTTCCCACTACCCCTTGTCCTGCCCCTCAGGGATTAGCACCCAGAATTCCCTGAGCTGCTCTCCACCCCACCAGTCCCCAGCCCTAGAGGACATCGGCTGCAGTTCTTGTGCGGAAAAATCCAAGAAAACCCCTTGTGGGACTGCCAATGGGCCAGTGAACACAGAGGTGAAAGCTAATGGCCCACACCTCTACAGCAGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:28912905|28913111 hsa-miR-34a-5p 0 0 1
chr17:28912905|28913111 hsa-miR-34a-3p 0 0 1
chr17:28912905|28913111 hsa-miR-185-5p 0 0 1
chr17:28912905|28913111 hsa-miR-185-3p 0 0 1
chr17:28912905|28913111 hsa-miR-449a 0 0 1
chr17:28912905|28913111 hsa-miR-432-5p 0 0 1
chr17:28912905|28913111 hsa-miR-432-3p 0 0 1
chr17:28912905|28913111 hsa-miR-193b-5p 0 0 1
chr17:28912905|28913111 hsa-miR-193b-3p 0 0 1
chr17:28912905|28913111 hsa-miR-578 0 0 1
chr17:28912905|28913111 hsa-miR-608 1 1 1
chr17:28912905|28913111 hsa-miR-646 1 0 1
chr17:28912905|28913111 hsa-miR-449b-5p 0 0 1
chr17:28912905|28913111 hsa-miR-449b-3p 0 0 1
chr17:28912905|28913111 hsa-miR-541-5p 0 0 1
chr17:28912905|28913111 hsa-miR-541-3p 0 0 1
chr17:28912905|28913111 hsa-miR-1286 0 0 1
chr17:28912905|28913111 hsa-miR-1290 0 0 1
chr17:28912905|28913111 hsa-miR-1266-5p 0 0 1
chr17:28912905|28913111 hsa-miR-1266-3p 0 0 1
chr17:28912905|28913111 hsa-miR-486-3p 0 0 1
chr17:28912905|28913111 hsa-miR-1184 0 1 1
chr17:28912905|28913111 hsa-miR-423-5p 1 1 1
chr17:28912905|28913111 hsa-miR-654-5p 0 0 1
chr17:28912905|28913111 hsa-miR-188-3p 0 1 1
chr17:28912905|28913111 hsa-miR-342-5p 0 0 1
chr17:28912905|28913111 hsa-miR-125a-5p 0 0 1
chr17:28912905|28913111 hsa-miR-34c-5p 0 0 1
chr17:28912905|28913111 hsa-miR-509-3-5p 0 1 1
chr17:28912905|28913111 hsa-miR-509-5p 0 0 1
chr17:28912905|28913111 hsa-miR-876-5p 0 0 1
chr17:28912905|28913111 hsa-miR-193a-3p 1 1 1
chr17:28912905|28913111 hsa-miR-125b 0 0 1
chr17:28912905|28913111 hsa-miR-637 1 0 0
chr17:28912905|28913111 hsa-miR-762 1 1 0
chr17:28912905|28913111 hsa-miR-920 1 0 0
chr17:28912905|28913111 hsa-miR-1183 1 0 0
chr17:28912905|28913111 hsa-miR-2861 1 0 0
chr17:28912905|28913111 hsa-miR-3132 1 0 0
chr17:28912905|28913111 hsa-miR-3137 1 0 0
chr17:28912905|28913111 hsa-miR-3141 1 0 0
chr17:28912905|28913111 hsa-miR-3147 1 0 0
chr17:28912905|28913111 hsa-miR-3154 1 0 0
chr17:28912905|28913111 hsa-miR-3196 1 0 0
chr17:28912905|28913111 hsa-miR-4270 1 0 0
chr17:28912905|28913111 hsa-miR-3909 1 1 0
chr17:28912905|28913111 hsa-miR-3936 1 1 0
chr17:28912905|28913111 hsa-miR-4430 1 0 0
chr17:28912905|28913111 hsa-miR-4436a 1 1 0
chr17:28912905|28913111 hsa-miR-4450 1 0 0
chr17:28912905|28913111 hsa-miR-4492 1 0 0
chr17:28912905|28913111 hsa-miR-4498 1 1 0
chr17:28912905|28913111 hsa-miR-4505 1 0 0
chr17:28912905|28913111 hsa-miR-4507 1 0 0
chr17:28912905|28913111 hsa-miR-4508 1 0 0
chr17:28912905|28913111 hsa-miR-4511 0 1 0
chr17:28912905|28913111 hsa-miR-4516 1 0 0
chr17:28912905|28913111 hsa-miR-4518 0 1 0
chr17:28912905|28913111 hsa-miR-1587 1 0 0
chr17:28912905|28913111 hsa-miR-4651 1 1 0
chr17:28912905|28913111 hsa-miR-4656 1 0 0
chr17:28912905|28913111 hsa-miR-4660 0 1 0
chr17:28912905|28913111 hsa-miR-4688 1 1 0
chr17:28912905|28913111 hsa-miR-4734 1 0 0
chr17:28912905|28913111 hsa-miR-4741 1 0 0
chr17:28912905|28913111 hsa-miR-4748 1 0 0
chr17:28912905|28913111 hsa-miR-5090 1 0 0
chr17:28912905|28913111 hsa-miR-5194 1 0 0
chr17:28912905|28913111 hsa-miR-5787 1 1 0
chr17:28912905|28913111 hsa-miR-6085 1 0 0
chr17:28912905|28913111 hsa-miR-6124 1 0 0
chr17:28912905|28913111 hsa-miR-6132 1 1 0
chr17:28912905|28913111 hsa-miR-6745 0 1 0
chr17:28912905|28913111 hsa-miR-8052 1 0 0
chr17:28912905|28913111 hsa-miR-8089 1 1 0
chr17:28912905|28913111 hsa-miR-12119 1 0 0
chr17:28912905|28913111 hsa-miR-6734-5p 1 1 0
chr17:28912905|28913111 hsa-miR-4731-5p 1 0 0
chr17:28912905|28913111 hsa-miR-504-3p 1 0 0
chr17:28912905|28913111 hsa-miR-124-5p 0 1 0
chr17:28912905|28913111 hsa-miR-6825-5p 1 0 0
chr17:28912905|28913111 hsa-miR-6857-5p 1 0 0
chr17:28912905|28913111 hsa-miR-6757-5p 1 0 0
chr17:28912905|28913111 hsa-miR-6880-5p 1 0 0
chr17:28912905|28913111 hsa-miR-6746-5p 1 0 0
chr17:28912905|28913111 hsa-miR-4722-5p 1 0 0
chr17:28912905|28913111 hsa-miR-7154-3p 1 0 0
chr17:28912905|28913111 hsa-miR-7160-5p 1 0 0
chr17:28912905|28913111 hsa-miR-6890-5p 1 0 0
chr17:28912905|28913111 hsa-miR-6741-5p 1 1 0
chr17:28912905|28913111 hsa-miR-3622b-5p 1 0 0
chr17:28912905|28913111 hsa-miR-6721-5p 1 0 0
chr17:28912905|28913111 hsa-miR-197-5p 1 0 0
chr17:28912905|28913111 hsa-miR-6776-5p 1 0 0
chr17:28912905|28913111 hsa-miR-7845-5p 1 0 0
chr17:28912905|28913111 hsa-miR-6742-5p 1 1 0
chr17:28912905|28913111 hsa-miR-6716-5p 1 0 0
chr17:28912905|28913111 hsa-miR-6796-5p 1 1 0
chr17:28912905|28913111 hsa-miR-6829-5p 1 0 0
chr17:28912905|28913111 hsa-miR-6732-5p 1 0 0
chr17:28912905|28913111 hsa-miR-6798-5p 1 0 0
chr17:28912905|28913111 hsa-miR-6782-5p 1 1 0
chr17:28912905|28913111 hsa-miR-6810-5p 1 0 0
chr17:28912905|28913111 hsa-miR-345-3p 1 0 0
chr17:28912905|28913111 hsa-miR-6786-5p 1 0 0
chr17:28912905|28913111 hsa-miR-5088-5p 1 0 0
chr17:28912905|28913111 hsa-miR-1226-5p 1 0 0
chr17:28912905|28913111 hsa-miR-3944-3p 1 0 0
chr17:28912905|28913111 hsa-miR-1229-5p 1 0 0
chr17:28912905|28913111 hsa-miR-6784-5p 1 0 0
chr17:28912905|28913111 hsa-miR-4640-5p 1 0 0
chr17:28912905|28913111 hsa-miR-5004-3p 0 1 0
chr17:28912905|28913111 hsa-miR-6757-3p 1 0 0
chr17:28912905|28913111 hsa-miR-3127-5p 1 0 0
chr17:28912905|28913111 hsa-miR-1228-5p 1 0 0
chr17:28912905|28913111 hsa-miR-296-3p 1 0 0
chr17:28912905|28913111 hsa-miR-6823-5p 1 0 0
chr17:28912905|28913111 hsa-miR-92b-5p 1 0 0
chr17:28912905|28913111 hsa-miR-4446-3p 1 0 0
chr17:28912905|28913111 hsa-miR-149-3p 1 0 0
chr17:28912905|28913111 hsa-miR-7156-3p 1 0 0
chr17:28912905|28913111 hsa-miR-6781-5p 1 0 0
chr17:28912905|28913111 hsa-miR-4652-5p 1 1 0
chr17:28912905|28913111 hsa-miR-4727-3p 0 1 0
chr17:28912905|28913111 hsa-miR-1207-5p 1 0 0
chr17:28912905|28913111 hsa-miR-4763-3p 1 0 0
chr17:28912905|28913111 hsa-miR-6769b-5p 1 0 0
chr17:28912905|28913111 hsa-miR-6787-5p 1 0 0
chr17:28912905|28913111 hsa-miR-6812-5p 1 1 0
chr17:28912905|28913111 hsa-miR-6816-5p 1 0 0
chr17:28912905|28913111 hsa-miR-1343-5p 1 0 0
chr17:28912905|28913111 hsa-miR-5001-5p 1 1 0
chr17:28912905|28913111 hsa-miR-6726-5p 1 0 0
chr17:28912905|28913111 hsa-miR-6737-5p 0 1 0
chr17:28912905|28913111 hsa-miR-6743-5p 1 1 0
chr17:28912905|28913111 hsa-miR-6756-5p 1 0 0
chr17:28912905|28913111 hsa-miR-6803-5p 1 0 0
chr17:28912905|28913111 hsa-miR-6813-5p 1 0 0
chr17:28912905|28913111 hsa-miR-6819-5p 1 1 0
chr17:28912905|28913111 hsa-miR-6722-3p 1 0 0
chr17:28912905|28913111 hsa-miR-6751-5p 1 0 0
chr17:28912905|28913111 hsa-miR-6763-5p 1 0 0
chr17:28912905|28913111 hsa-miR-6879-5p 1 0 0
chr17:28912905|28913111 hsa-miR-3620-5p 1 0 0
chr17:28912905|28913111 hsa-miR-5189-5p 1 0 0
chr17:28912905|28913111 hsa-miR-5196-5p 1 0 0
chr17:28912905|28913111 hsa-miR-6780b-5p 1 0 0
chr17:28912905|28913111 hsa-miR-10526-3p 1 0 0
chr17:28912905|28913111 hsa-miR-328-5p 1 1 0
chr17:28912905|28913111 hsa-miR-4632-5p 1 0 0
chr17:28912905|28913111 hsa-miR-4685-5p 1 0 0
chr17:28912905|28913111 hsa-miR-4725-3p 1 0 0
chr17:28912905|28913111 hsa-miR-6738-5p 1 0 0
chr17:28912905|28913111 hsa-miR-6795-5p 1 0 0
chr17:28912905|28913111 hsa-miR-6846-5p 1 1 0
chr17:28912905|28913111 hsa-miR-6848-5p 1 0 0
chr17:28912905|28913111 hsa-miR-6887-5p 1 0 0
chr17:28912905|28913111 hsa-miR-4436b-3p 1 0 0
chr17:28912905|28913111 hsa-miR-939-5p 1 0 0
chr17:28912905|28913111 hsa-miR-365a-5p 1 0 0
chr17:28912905|28913111 hsa-miR-365b-5p 1 0 0
chr17:28912905|28913111 hsa-miR-3085-5p 0 1 0
chr17:28912905|28913111 hsa-miR-3940-5p 1 0 0
chr17:28912905|28913111 hsa-miR-6731-5p 1 0 0
chr17:28912905|28913111 hsa-miR-1914-3p 1 0 0
chr17:28912905|28913111 hsa-miR-6855-5p 1 0 0
chr17:28912905|28913111 hsa-miR-4700-5p 1 0 0
chr17:28912905|28913111 hsa-miR-6766-5p 1 0 0
chr17:28912905|28913111 hsa-miR-4667-5p 1 0 0
chr17:28912905|28913111 hsa-miR-6791-5p 1 0 0
chr17:28912905|28913111 hsa-miR-3059-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:28912905|28913111
ORF Type ORF1
Protein Length 40
Nucleotide Length 123
Protein Sequence MLSTPPVPSPRGHRLQFLCGKIQENPLWDCQWASEHRGES
Nucleotide Sequence CTGCTCTCCACCCCACCAGTCCCCAGCCCTAGAGGACATCGGCTGCAGTTCTTGTGCGGAAAAATCCAAGAAAACCCCTTGTGGGACTGCCAATGGGCCAGTGAACACAGAGGTGAAAGCTAA
CircID chr17:28912905|28913111
ORF Type ORF2
Protein Length 62
Nucleotide Length 186
Protein Sequence MSCPSGISTQNSLSCSPPHQSPALEDIGCSSCAEKSKKTPCGTANGPVNTEVKANGPHLYSS
Nucleotide Sequence TTGTCCTGCCCCTCAGGGATTAGCACCCAGAATTCCCTGAGCTGCTCTCCACCCCACCAGTCCCCAGCCCTAGAGGACATCGGCTGCAGTTCTTGTGCGGAAAAATCCAAGAAAACCCCTTGTGGGACTGCCAATGGGCCAGTGAACACAGAGGTGAAAGCTAATGGCCCACACCTCTACAGCAGC
CircID chr17:28912905|28913111
ORF Type ORF3
Protein Length 43
Nucleotide Length 132
Protein Sequence MCSLAHWQSHKGFSWIFPHKNCSRCPLGLGTGGVESSSGNSGC
Nucleotide Sequence CTGTGTTCACTGGCCCATTGGCAGTCCCACAAGGGGTTTTCTTGGATTTTTCCGCACAAGAACTGCAGCCGATGTCCTCTAGGGCTGGGGACTGGTGGGGTGGAGAGCAGCTCAGGGAATTCTGGGTGCTAA
CircID chr17:28912905|28913111
ORF Type ORF4
Protein Length 46
Nucleotide Length 141
Protein Sequence MAVPQGVFLDFSAQELQPMSSRAGDWWGGEQLREFWVLIPEGQDKG
Nucleotide Sequence TTGGCAGTCCCACAAGGGGTTTTCTTGGATTTTTCCGCACAAGAACTGCAGCCGATGTCCTCTAGGGCTGGGGACTGGTGGGGTGGAGAGCAGCTCAGGGAATTCTGGGTGCTAATCCCTGAGGGGCAGGACAAGGGGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab