CircRNA Information

General Information
circRNA Basic Information
CircID chr17:29574522|29574710
Strand -
CircType exon
Host Gene ENSG00000108262.14;
Algorism CIRI2;
Sequence CTCCCCATCCTTAGGGGCTCGACAGGGGTGGGCACCAGGGCACCTGGCTGCCAGGGAGTGTGGCAGCACTAAGGGCACTTGTGCCAGTGGCTCTGTTGGGGTGGGGATTAATGTCTGGAGTGGCCCAGCTCCTATGGCCAGTGAGGTCCTAGGGTGCAGGTGAGGGTGTGGGGAGAGAGGTCACTGCTT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:29574522|29574710 hsa-miR-193b-5p 0 0 1
chr17:29574522|29574710 hsa-miR-193b-3p 0 0 1
chr17:29574522|29574710 hsa-miR-520f-5p 0 0 1
chr17:29574522|29574710 hsa-miR-520f-3p 0 0 1
chr17:29574522|29574710 hsa-miR-874-5p 0 0 1
chr17:29574522|29574710 hsa-miR-874-3p 0 0 1
chr17:29574522|29574710 hsa-miR-708-5p 0 0 1
chr17:29574522|29574710 hsa-miR-708-3p 0 0 1
chr17:29574522|29574710 hsa-miR-938 0 0 1
chr17:29574522|29574710 hsa-miR-939-5p 0 0 1
chr17:29574522|29574710 hsa-miR-939-3p 0 0 1
chr17:29574522|29574710 hsa-miR-1225-3p 0 0 1
chr17:29574522|29574710 hsa-miR-512-3p 0 0 1
chr17:29574522|29574710 hsa-miR-885-3p 0 0 1
chr17:29574522|29574710 hsa-miR-146b-3p 0 0 1
chr17:29574522|29574710 hsa-miR-339-5p 0 0 1
chr17:29574522|29574710 hsa-miR-508-5p 0 0 1
chr17:29574522|29574710 hsa-miR-28-5p 0 0 1
chr17:29574522|29574710 hsa-miR-193a-3p 0 0 1
chr17:29574522|29574710 hsa-miR-623 1 0 0
chr17:29574522|29574710 hsa-miR-762 1 0 0
chr17:29574522|29574710 hsa-miR-3137 1 0 0
chr17:29574522|29574710 hsa-miR-4300 1 0 0
chr17:29574522|29574710 hsa-miR-4286 1 0 0
chr17:29574522|29574710 hsa-miR-4508 1 0 0
chr17:29574522|29574710 hsa-miR-4673 1 0 0
chr17:29574522|29574710 hsa-miR-6072 1 0 0
chr17:29574522|29574710 hsa-miR-7974 1 0 0
chr17:29574522|29574710 hsa-miR-9898 1 0 0
chr17:29574522|29574710 hsa-miR-6749-3p 1 0 0
chr17:29574522|29574710 hsa-miR-4665-3p 1 0 0
chr17:29574522|29574710 hsa-miR-6892-3p 1 0 0
chr17:29574522|29574710 hsa-miR-3677-5p 1 0 0
chr17:29574522|29574710 hsa-miR-3187-3p 1 0 0
chr17:29574522|29574710 hsa-miR-3189-5p 1 0 0
chr17:29574522|29574710 hsa-miR-7110-3p 1 0 0
chr17:29574522|29574710 hsa-miR-6787-3p 1 0 0
chr17:29574522|29574710 hsa-miR-6845-3p 1 0 0
chr17:29574522|29574710 hsa-miR-4697-3p 1 0 0
chr17:29574522|29574710 hsa-miR-3130-3p 1 0 0
chr17:29574522|29574710 hsa-miR-4793-3p 1 0 0
chr17:29574522|29574710 hsa-miR-6765-3p 1 0 0
chr17:29574522|29574710 hsa-miR-6874-5p 1 0 0
chr17:29574522|29574710 hsa-miR-6728-3p 1 0 0
chr17:29574522|29574710 hsa-miR-6740-3p 1 0 0
chr17:29574522|29574710 hsa-miR-6858-3p 1 0 0
chr17:29574522|29574710 hsa-miR-4713-5p 1 0 0
chr17:29574522|29574710 hsa-miR-532-3p 1 0 0
chr17:29574522|29574710 hsa-miR-4707-3p 1 0 0
chr17:29574522|29574710 hsa-miR-4640-5p 1 0 0
chr17:29574522|29574710 hsa-miR-6803-3p 1 0 0
chr17:29574522|29574710 hsa-miR-3679-3p 1 0 0
chr17:29574522|29574710 hsa-miR-652-5p 1 0 0
chr17:29574522|29574710 hsa-miR-6821-3p 1 0 0
chr17:29574522|29574710 hsa-miR-6861-3p 1 0 0
chr17:29574522|29574710 hsa-miR-7111-3p 1 0 0
chr17:29574522|29574710 hsa-miR-1236-3p 1 0 0
chr17:29574522|29574710 hsa-miR-6743-3p 1 0 0
chr17:29574522|29574710 hsa-miR-6499-3p 1 0 0
chr17:29574522|29574710 hsa-miR-6730-3p 1 0 0
chr17:29574522|29574710 hsa-miR-6804-3p 1 0 0
chr17:29574522|29574710 hsa-miR-6720-3p 1 0 0
chr17:29574522|29574710 hsa-miR-3180-5p 1 0 0
chr17:29574522|29574710 hsa-miR-6867-3p 1 0 0
chr17:29574522|29574710 hsa-miR-1224-3p 1 0 0
chr17:29574522|29574710 hsa-miR-6782-3p 1 0 0
chr17:29574522|29574710 hsa-miR-6777-3p 1 0 0
chr17:29574522|29574710 hsa-miR-6794-3p 1 0 0
chr17:29574522|29574710 hsa-miR-130b-5p 1 0 0
chr17:29574522|29574710 hsa-miR-3620-3p 1 0 0
chr17:29574522|29574710 hsa-miR-1229-3p 1 0 0
chr17:29574522|29574710 hsa-miR-6759-3p 1 0 0
chr17:29574522|29574710 hsa-miR-6790-3p 1 0 0
chr17:29574522|29574710 hsa-miR-3162-3p 1 0 0
chr17:29574522|29574710 hsa-miR-1228-3p 1 0 0
chr17:29574522|29574710 hsa-miR-6731-3p 1 0 0
chr17:29574522|29574710 hsa-miR-6816-5p 1 0 0
chr17:29574522|29574710 hsa-miR-5001-5p 1 0 0
chr17:29574522|29574710 hsa-miR-6726-5p 1 0 0
chr17:29574522|29574710 hsa-miR-320a-5p 1 0 0
chr17:29574522|29574710 hsa-miR-4685-3p 1 0 0
chr17:29574522|29574710 hsa-miR-6754-3p 1 0 0
chr17:29574522|29574710 hsa-miR-3620-5p 1 0 0
chr17:29574522|29574710 hsa-miR-4757-5p 1 0 0
chr17:29574522|29574710 hsa-miR-6784-3p 1 0 0
chr17:29574522|29574710 hsa-miR-6862-3p 1 0 0
chr17:29574522|29574710 hsa-miR-10401-3p 1 0 0
chr17:29574522|29574710 hsa-miR-6805-3p 1 0 0
chr17:29574522|29574710 hsa-miR-6511b-3p 1 0 0
chr17:29574522|29574710 hsa-miR-6769b-3p 1 0 0
chr17:29574522|29574710 hsa-miR-6744-3p 1 0 0
chr17:29574522|29574710 hsa-miR-6500-5p 1 0 0
chr17:29574522|29574710 hsa-miR-6833-3p 1 0 0
chr17:29574522|29574710 hsa-miR-412-3p 1 0 0
chr17:29574522|29574710 hsa-miR-6820-3p 1 0 0
chr17:29574522|29574710 hsa-miR-342-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:29574522|29574710
ORF Type ORF1
Protein Length 39
Nucleotide Length 120
Protein Sequence MAARECGSTKGTCASGSVGVGINVWSGPAPMASEVLGCR
Nucleotide Sequence CTGGCTGCCAGGGAGTGTGGCAGCACTAAGGGCACTTGTGCCAGTGGCTCTGTTGGGGTGGGGATTAATGTCTGGAGTGGCCCAGCTCCTATGGCCAGTGAGGTCCTAGGGTGCAGGTGA
CircID chr17:29574522|29574710
ORF Type ORF2
Protein Length 34
Nucleotide Length 105
Protein Sequence MPGSVAALRALVPVALLGWGLMSGVAQLLWPVRS
Nucleotide Sequence CTGCCAGGGAGTGTGGCAGCACTAAGGGCACTTGTGCCAGTGGCTCTGTTGGGGTGGGGATTAATGTCTGGAGTGGCCCAGCTCCTATGGCCAGTGAGGTCCTAG
CircID chr17:29574522|29574710
ORF Type ORF3
Protein Length 53
Nucleotide Length 159
Protein Sequence MHPRTSLAIGAGPLQTLIPTPTEPLAQVPLVLPHSLAARCPGAHPCRAPKDGE
Nucleotide Sequence CTGCACCCTAGGACCTCACTGGCCATAGGAGCTGGGCCACTCCAGACATTAATCCCCACCCCAACAGAGCCACTGGCACAAGTGCCCTTAGTGCTGCCACACTCCCTGGCAGCCAGGTGCCCTGGTGCCCACCCCTGTCGAGCCCCTAAGGATGGGGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab