CircRNA Information

General Information
circRNA Basic Information
CircID chr17:30803901|30804108
Strand -
CircType exon
Host Gene ENSG00000176390.11;
Algorism find_circ;CIRI2;DCC;
Sequence ATCAAAGAAAGTGCATCACAGACAAGGGATGTTCTCAAACAGCATTTTAATGATTTAAAGGGAACCCTTGGAAAGCTCCTGGATGAGCGATTGGTGACCCTTTTGCAAGAGGTGGACACCATTGAACAGGAGACCATTAAACCACTAGATGACTGCCAGAAGCTCATAGAACACGGAGTCAACACTGCAGAGGACTTAGTCCGAGAAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:30803901|30804108 hsa-miR-17-5p 0 0 1
chr17:30803901|30804108 hsa-miR-17-3p 0 0 1
chr17:30803901|30804108 hsa-miR-20a-5p 0 0 1
chr17:30803901|30804108 hsa-miR-20a-3p 0 0 1
chr17:30803901|30804108 hsa-miR-93-5p 0 0 1
chr17:30803901|30804108 hsa-miR-93-3p 0 0 1
chr17:30803901|30804108 hsa-miR-106a-5p 0 0 1
chr17:30803901|30804108 hsa-miR-106a-3p 0 0 1
chr17:30803901|30804108 hsa-miR-141-5p 0 0 1
chr17:30803901|30804108 hsa-miR-141-3p 0 0 1
chr17:30803901|30804108 hsa-miR-106b-5p 0 0 1
chr17:30803901|30804108 hsa-miR-106b-3p 0 0 1
chr17:30803901|30804108 hsa-miR-200a-5p 0 0 1
chr17:30803901|30804108 hsa-miR-200a-3p 0 0 1
chr17:30803901|30804108 hsa-miR-20b-5p 0 0 1
chr17:30803901|30804108 hsa-miR-20b-3p 0 0 1
chr17:30803901|30804108 hsa-miR-376b-5p 0 0 1
chr17:30803901|30804108 hsa-miR-376b-3p 0 0 1
chr17:30803901|30804108 hsa-miR-519d-5p 0 0 1
chr17:30803901|30804108 hsa-miR-519d-3p 0 0 1
chr17:30803901|30804108 hsa-miR-504-5p 0 0 1
chr17:30803901|30804108 hsa-miR-504-3p 0 0 1
chr17:30803901|30804108 hsa-miR-505-5p 0 0 1
chr17:30803901|30804108 hsa-miR-505-3p 0 0 1
chr17:30803901|30804108 hsa-miR-507 0 0 1
chr17:30803901|30804108 hsa-miR-557 0 0 1
chr17:30803901|30804108 hsa-miR-1255a 0 0 1
chr17:30803901|30804108 hsa-miR-513c-5p 0 0 1
chr17:30803901|30804108 hsa-miR-513c-3p 0 0 1
chr17:30803901|30804108 hsa-miR-28-3p 0 0 1
chr17:30803901|30804108 hsa-miR-509-3p 0 0 1
chr17:30803901|30804108 hsa-miR-509-3-5p 0 0 1
chr17:30803901|30804108 hsa-miR-509-5p 0 0 1
chr17:30803901|30804108 hsa-miR-519b-3p 0 1 1
chr17:30803901|30804108 hsa-miR-519c-3p 0 1 1
chr17:30803901|30804108 hsa-miR-450b-5p 0 0 1
chr17:30803901|30804108 hsa-miR-371-5p 0 0 1
chr17:30803901|30804108 hsa-miR-1255b 0 0 1
chr17:30803901|30804108 hsa-miR-376a 0 0 1
chr17:30803901|30804108 hsa-miR-519a 0 0 1
chr17:30803901|30804108 hsa-miR-658 1 0 0
chr17:30803901|30804108 hsa-miR-3138 0 1 0
chr17:30803901|30804108 hsa-miR-4418 0 1 0
chr17:30803901|30804108 hsa-miR-5708 0 1 0
chr17:30803901|30804108 hsa-miR-6076 1 0 0
chr17:30803901|30804108 hsa-miR-6165 1 0 0
chr17:30803901|30804108 hsa-miR-6510-5p 1 0 0
chr17:30803901|30804108 hsa-miR-4722-5p 1 0 0
chr17:30803901|30804108 hsa-miR-6782-5p 1 0 0
chr17:30803901|30804108 hsa-miR-6847-5p 0 1 0
chr17:30803901|30804108 hsa-miR-6800-5p 1 1 0
chr17:30803901|30804108 hsa-miR-4684-3p 0 1 0
chr17:30803901|30804108 hsa-miR-4742-5p 0 1 0
chr17:30803901|30804108 hsa-miR-7112-3p 0 1 0
chr17:30803901|30804108 hsa-miR-15a-5p 0 1 0
chr17:30803901|30804108 hsa-miR-497-3p 0 1 0
chr17:30803901|30804108 hsa-miR-651-3p 0 1 0
chr17:30803901|30804108 hsa-miR-6512-5p 0 1 0
chr17:30803901|30804108 hsa-miR-4763-3p 1 0 0
chr17:30803901|30804108 hsa-miR-6851-5p 1 0 0
chr17:30803901|30804108 hsa-miR-6750-5p 0 1 0
chr17:30803901|30804108 hsa-miR-6822-5p 0 1 0
chr17:30803901|30804108 hsa-miR-7156-5p 0 1 0
chr17:30803901|30804108 hsa-miR-148b-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:30803901|30804108
ORF Type ORF1
Protein Length 55
Nucleotide Length 165
Protein Sequence MSFWQSSSGLMVSCSMVSTSCKRVTNRSSRSFPRVPFKSLKCCLRTSLVCDALSL
Nucleotide Sequence ATGAGCTTCTGGCAGTCATCTAGTGGTTTAATGGTCTCCTGTTCAATGGTGTCCACCTCTTGCAAAAGGGTCACCAATCGCTCATCCAGGAGCTTTCCAAGGGTTCCCTTTAAATCATTAAAATGCTGTTTGAGAACATCCCTTGTCTGTGATGCACTTTCTTTG
CircID chr17:30803901|30804108
ORF Type ORF1
Protein Length 60
Nucleotide Length 180
Protein Sequence MTPCSMSFWQSSSGLMVSCSMVSTSCKRVTNRSSRSFPRVPFKSLKCCLRTSLVCDALSL
Nucleotide Sequence TTGACTCCGTGTTCTATGAGCTTCTGGCAGTCATCTAGTGGTTTAATGGTCTCCTGTTCAATGGTGTCCACCTCTTGCAAAAGGGTCACCAATCGCTCATCCAGGAGCTTTCCAAGGGTTCCCTTTAAATCATTAAAATGCTGTTTGAGAACATCCCTTGTCTGTGATGCACTTTCTTTG
CircID chr17:30803901|30804108
ORF Type ORF2
Protein Length 43
Nucleotide Length 129
Protein Sequence MDERLVTLLQEVDTIEQETIKPLDDCQKLIEHGVNTAEDLVRE
Nucleotide Sequence CTGGATGAGCGATTGGTGACCCTTTTGCAAGAGGTGGACACCATTGAACAGGAGACCATTAAACCACTAGATGACTGCCAGAAGCTCATAGAACACGGAGTCAACACTGCAGAGGACTTAGTCCGAGAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr17:30803901|30804108 NOP56 2 1 0
chr17:30803901|30804108 MOV10 0 0 1
chr17:30803901|30804108 ELAVL1 2 2 1
chr17:30803901|30804108 NUMA1 1 0 0
chr17:30803901|30804108 CELF2 1 1 0
chr17:30803901|30804108 PRPF8 0 1 0
chr17:30803901|30804108 FMR1 0 1 2
chr17:30803901|30804108 CPSF6 0 1 0
chr17:30803901|30804108 NUDT21 1 0 0
chr17:30803901|30804108 FUS 0 1 0
chr17:30803901|30804108 DGCR8 0 1 1
chr17:30803901|30804108 SRSF1 0 2 4
chr17:30803901|30804108 NOP58 1 0 2
chr17:30803901|30804108 U2AF2 4 0 1
chr17:30803901|30804108 PTBP1 1 0 0
chr17:30803901|30804108 HNRNPC 2 0 0
chr17:30803901|30804108 HNRNPD 1 1 0
chr17:30803901|30804108 TRA2A 0 1 1
chr17:30803901|30804108 DHX9 2 0 1
chr17:30803901|30804108 RBFOX2 0 1 0
chr17:30803901|30804108 DDX3X 0 0 1
chr17:30803901|30804108 SMNDC1 2 0 1
chr17:30803901|30804108 HNRNPA1 2 2 0
chr17:30803901|30804108 IGF2BP2 2 2 6
chr17:30803901|30804108 TARDBP 4 8 1
chr17:30803901|30804108 KHSRP 1 0 0
chr17:30803901|30804108 SLTM 0 1 0
chr17:30803901|30804108 EIF4G2 1 1 0
chr17:30803901|30804108 DKC1 1 2 0
chr17:30803901|30804108 EIF4A3 0 1 3
chr17:30803901|30804108 FBL 1 0 2
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab