CircRNA Information

General Information
circRNA Basic Information
CircID chr17:32369306|32369694
Strand +
CircType exon
Host Gene ENSG00000010244.15;
Algorism CIRI2;
Sequence CCTGGTAAGGGGGCACCATTGGCGGTCCCTGCCCATACGGGGGCATAGCACCAGGAAGGTATCCTGGCATGCCTTGATGATGACCACCATACTGACCTAAAATCAAGAATTTCAAACACAAAAAAATAGATTGTTAACGCATTGTACTTTTAAGTGCAACGTATGCTGCAGATAAATTTAATATTTTATGCGTGAACTTAGAAAATCCACTAAATATGAAAAACATAAAAAGAGGAATACCATGAGGTGGCATTGGGGGTCTCATTCCTTGTTGCTGTGGGATGCCTGGCTGTGGTGGCATCATACCTCCAATTGGTCCAACTGGTGGATTACCGATGGGGGCCTGTCCTGGCCGAGGAAGATTACGTTGATACTTAGGTAACTGTGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:32369306|32369694 hsa-miR-107 0 0 1
chr17:32369306|32369694 hsa-miR-202-5p 0 0 1
chr17:32369306|32369694 hsa-miR-202-3p 0 0 1
chr17:32369306|32369694 hsa-miR-526b-5p 0 0 1
chr17:32369306|32369694 hsa-miR-526b-3p 0 0 1
chr17:32369306|32369694 hsa-miR-599 0 0 1
chr17:32369306|32369694 hsa-miR-935 0 0 1
chr17:32369306|32369694 hsa-miR-1238-5p 0 0 1
chr17:32369306|32369694 hsa-miR-1238-3p 0 0 1
chr17:32369306|32369694 hsa-miR-1205 0 0 1
chr17:32369306|32369694 hsa-miR-1290 0 0 1
chr17:32369306|32369694 hsa-miR-548k 0 0 1
chr17:32369306|32369694 hsa-miR-548n 0 0 1
chr17:32369306|32369694 hsa-miR-1272 0 0 1
chr17:32369306|32369694 hsa-miR-1279 0 0 1
chr17:32369306|32369694 hsa-miR-1322 0 0 1
chr17:32369306|32369694 hsa-miR-129-5p 0 0 1
chr17:32369306|32369694 hsa-miR-769-5p 0 0 1
chr17:32369306|32369694 hsa-miR-324-5p 0 0 1
chr17:32369306|32369694 hsa-miR-1184 0 0 1
chr17:32369306|32369694 hsa-miR-188-3p 0 0 1
chr17:32369306|32369694 hsa-miR-876-3p 0 0 1
chr17:32369306|32369694 hsa-miR-140-3p 0 0 1
chr17:32369306|32369694 hsa-miR-576-5p 0 0 1
chr17:32369306|32369694 hsa-miR-1207-5p 0 0 1
chr17:32369306|32369694 hsa-miR-513a-3p 0 0 1
chr17:32369306|32369694 hsa-miR-876-5p 0 0 1
chr17:32369306|32369694 hsa-miR-323-5p 0 0 1
chr17:32369306|32369694 hsa-miR-103 0 0 1
chr17:32369306|32369694 hsa-miR-768-5p 0 0 1
chr17:32369306|32369694 hsa-miR-203 0 0 1
chr17:32369306|32369694 hsa-miR-612 1 0 0
chr17:32369306|32369694 hsa-miR-762 1 0 0
chr17:32369306|32369694 hsa-miR-1226-5p 1 0 0
chr17:32369306|32369694 hsa-miR-7112-5p 1 0 0
chr17:32369306|32369694 hsa-miR-3922-5p 1 0 0
chr17:32369306|32369694 hsa-miR-6801-5p 1 0 0
chr17:32369306|32369694 hsa-miR-6859-3p 1 0 0
chr17:32369306|32369694 hsa-miR-1229-3p 1 0 0
chr17:32369306|32369694 hsa-miR-4763-3p 1 0 0
chr17:32369306|32369694 hsa-miR-6743-5p 1 0 0
chr17:32369306|32369694 hsa-miR-6769a-5p 1 0 0
chr17:32369306|32369694 hsa-miR-1909-3p 1 0 0
chr17:32369306|32369694 hsa-miR-6500-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:32369306|32369694
ORF Type ORF1
Protein Length 41
Nucleotide Length 126
Protein Sequence MGVSFLVAVGCLAVVASYLQLVQLVDYRWGPVLAEEDYVDT
Nucleotide Sequence TTGGGGGTCTCATTCCTTGTTGCTGTGGGATGCCTGGCTGTGGTGGCATCATACCTCCAATTGGTCCAACTGGTGGATTACCGATGGGGGCCTGTCCTGGCCGAGGAAGATTACGTTGATACTTAG
CircID chr17:32369306|32369694
ORF Type ORF2
Protein Length 32
Nucleotide Length 99
Protein Sequence LVRGHHWRSLPIRGHSTRKVSWHALMMTTILT
Nucleotide Sequence CTGGTAAGGGGGCACCATTGGCGGTCCCTGCCCATACGGGGGCATAGCACCAGGAAGGTATCCTGGCATGCCTTGATGATGACCACCATACTGACCTAA
CircID chr17:32369306|32369694
ORF Type ORF3
Protein Length 64
Nucleotide Length 195
Protein Sequence MRELRKSTKYEKHKKRNTMRWHWGSHSLLLWDAWLWWHHTSNWSNWWITDGGLSWPRKITLILR
Nucleotide Sequence ATGCGTGAACTTAGAAAATCCACTAAATATGAAAAACATAAAAAGAGGAATACCATGAGGTGGCATTGGGGGTCTCATTCCTTGTTGCTGTGGGATGCCTGGCTGTGGTGGCATCATACCTCCAATTGGTCCAACTGGTGGATTACCGATGGGGGCCTGTCCTGGCCGAGGAAGATTACGTTGATACTTAGGTAA
CircID chr17:32369306|32369694
ORF Type ORF4
Protein Length 29
Nucleotide Length 90
Protein Sequence MPGCGGIIPPIGPTGGLPMGACPGRGRLR
Nucleotide Sequence ATGCCTGGCTGTGGTGGCATCATACCTCCAATTGGTCCAACTGGTGGATTACCGATGGGGGCCTGTCCTGGCCGAGGAAGATTACGTTGA
CircID chr17:32369306|32369694
ORF Type ORF5
Protein Length 56
Nucleotide Length 171
Protein Sequence MMPPQPGIPQQQGMRPPMPPHGIPLFMFFIFSGFSKFTHKILNLSAAYVALKSTMR
Nucleotide Sequence ATGATGCCACCACAGCCAGGCATCCCACAGCAACAAGGAATGAGACCCCCAATGCCACCTCATGGTATTCCTCTTTTTATGTTTTTCATATTTAGTGGATTTTCTAAGTTCACGCATAAAATATTAAATTTATCTGCAGCATACGTTGCACTTAAAAGTACAATGCGTTAA
CircID chr17:32369306|32369694
ORF Type ORF6
Protein Length 40
Nucleotide Length 120
Protein Sequence MCLKFLILGQYGGHHQGMPGYLPGAMPPYGQGPPMVPPYQ
Nucleotide Sequence TTGTGTTTGAAATTCTTGATTTTAGGTCAGTATGGTGGTCATCATCAAGGCATGCCAGGATACCTTCCTGGTGCTATGCCCCCGTATGGGCAGGGACCGCCAATGGTGCCCCCTTACCAG
CircID chr17:32369306|32369694
ORF Type ORF7
Protein Length 30
Nucleotide Length 90
Protein Sequence MVVIIKACQDTFLVLCPRMGRDRQWCPLTR
Nucleotide Sequence ATGGTGGTCATCATCAAGGCATGCCAGGATACCTTCCTGGTGCTATGCCCCCGTATGGGCAGGGACCGCCAATGGTGCCCCCTTACCAGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab