CircRNA Information

General Information
circRNA Basic Information
CircID chr17:34962280|34962465
Strand +
CircType exon
Host Gene ENSG00000198783.5;
Algorism CIRI2;
Sequence CGTCCCTCCTCATCCTCTTCGGCAACTATGGCTTCGGAAATAGTGTTGACCTGCCTCATGGCTTTTTGGAATTCGTCCCACTCTTTGTCCATCTGATCTTTTGGAGCATCAACCTTTCGTACTCTTGCATCTACCTCAGGGTCGTCAAAAAAACCTTCCGGTAACGCTTCCGCGGTGTTTTCTCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:34962280|34962465 hsa-let-7b-5p 0 0 1
chr17:34962280|34962465 hsa-let-7b-3p 0 0 1
chr17:34962280|34962465 hsa-let-7c-5p 0 0 1
chr17:34962280|34962465 hsa-let-7c-3p 0 0 1
chr17:34962280|34962465 hsa-let-7d-5p 0 0 1
chr17:34962280|34962465 hsa-let-7d-3p 0 0 1
chr17:34962280|34962465 hsa-let-7e-5p 0 0 1
chr17:34962280|34962465 hsa-let-7e-3p 0 0 1
chr17:34962280|34962465 hsa-miR-98-5p 0 0 1
chr17:34962280|34962465 hsa-miR-98-3p 0 0 1
chr17:34962280|34962465 hsa-let-7g-5p 0 0 1
chr17:34962280|34962465 hsa-let-7g-3p 0 0 1
chr17:34962280|34962465 hsa-let-7i-5p 0 0 1
chr17:34962280|34962465 hsa-let-7i-3p 0 0 1
chr17:34962280|34962465 hsa-miR-383-5p 0 0 1
chr17:34962280|34962465 hsa-miR-383-3p 0 0 1
chr17:34962280|34962465 hsa-miR-202-5p 0 0 1
chr17:34962280|34962465 hsa-miR-202-3p 0 0 1
chr17:34962280|34962465 hsa-miR-504-5p 0 0 1
chr17:34962280|34962465 hsa-miR-504-3p 0 0 1
chr17:34962280|34962465 hsa-miR-505-5p 0 0 1
chr17:34962280|34962465 hsa-miR-505-3p 0 0 1
chr17:34962280|34962465 hsa-miR-570-5p 0 0 1
chr17:34962280|34962465 hsa-miR-570-3p 0 0 1
chr17:34962280|34962465 hsa-miR-940 0 0 1
chr17:34962280|34962465 hsa-miR-1255a 0 0 1
chr17:34962280|34962465 hsa-miR-1827 0 0 1
chr17:34962280|34962465 hsa-miR-129-5p 0 0 1
chr17:34962280|34962465 hsa-miR-125a-5p 0 0 1
chr17:34962280|34962465 hsa-miR-125b 0 0 1
chr17:34962280|34962465 hsa-miR-1255b 0 0 1
chr17:34962280|34962465 hsa-let-7a 0 0 1
chr17:34962280|34962465 hsa-let-7f 0 0 1
chr17:34962280|34962465 hsa-miR-3132 1 0 0
chr17:34962280|34962465 hsa-miR-544b 0 1 0
chr17:34962280|34962465 hsa-miR-3138 1 0 0
chr17:34962280|34962465 hsa-miR-3147 1 0 0
chr17:34962280|34962465 hsa-miR-3165 1 0 0
chr17:34962280|34962465 hsa-miR-4298 1 0 0
chr17:34962280|34962465 hsa-miR-3945 1 0 0
chr17:34962280|34962465 hsa-miR-4458 1 1 0
chr17:34962280|34962465 hsa-miR-4534 1 0 0
chr17:34962280|34962465 hsa-miR-3960 1 0 0
chr17:34962280|34962465 hsa-miR-4751 1 0 0
chr17:34962280|34962465 hsa-miR-6165 1 0 0
chr17:34962280|34962465 hsa-miR-12136 0 1 0
chr17:34962280|34962465 hsa-miR-4433b-3p 1 0 0
chr17:34962280|34962465 hsa-miR-4433a-3p 1 0 0
chr17:34962280|34962465 hsa-miR-6765-5p 1 0 0
chr17:34962280|34962465 hsa-miR-671-5p 1 0 0
chr17:34962280|34962465 hsa-miR-8071 1 0 0
chr17:34962280|34962465 hsa-miR-6833-5p 1 0 0
chr17:34962280|34962465 hsa-miR-7154-3p 1 0 0
chr17:34962280|34962465 hsa-miR-6890-5p 1 0 0
chr17:34962280|34962465 hsa-miR-138-2-3p 0 1 0
chr17:34962280|34962465 hsa-miR-197-5p 1 0 0
chr17:34962280|34962465 hsa-miR-3190-3p 1 0 0
chr17:34962280|34962465 hsa-miR-6798-5p 1 0 0
chr17:34962280|34962465 hsa-miR-6853-5p 1 0 0
chr17:34962280|34962465 hsa-miR-6749-5p 1 0 0
chr17:34962280|34962465 hsa-miR-3648 1 0 0
chr17:34962280|34962465 hsa-miR-7162-3p 0 1 0
chr17:34962280|34962465 hsa-miR-423-5p 1 0 0
chr17:34962280|34962465 hsa-miR-6778-5p 1 0 0
chr17:34962280|34962465 hsa-miR-6870-5p 1 0 0
chr17:34962280|34962465 hsa-miR-1343-5p 1 0 0
chr17:34962280|34962465 hsa-miR-6756-5p 1 0 0
chr17:34962280|34962465 hsa-miR-10401-5p 1 0 0
chr17:34962280|34962465 hsa-miR-4745-5p 1 1 0
chr17:34962280|34962465 hsa-miR-6794-5p 1 0 0
chr17:34962280|34962465 hsa-miR-6858-5p 0 1 0
chr17:34962280|34962465 hsa-miR-6831-5p 1 1 0
chr17:34962280|34962465 hsa-miR-4758-5p 1 0 0
chr17:34962280|34962465 hsa-miR-4769-5p 1 0 0
chr17:34962280|34962465 hsa-miR-6891-5p 1 0 0
chr17:34962280|34962465 hsa-miR-6791-5p 1 0 0
chr17:34962280|34962465 hsa-miR-6529-5p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr17:34962280|34962465
ORF Type ORF1
Protein Length 28
Nucleotide Length 84
Protein Sequence MEHQPFVLLHLPQGRQKNLPVTLPRCFL
Nucleotide Sequence TTGGAGCATCAACCTTTCGTACTCTTGCATCTACCTCAGGGTCGTCAAAAAAACCTTCCGGTAACGCTTCCGCGGTGTTTTCTC
CircID chr17:34962280|34962465
ORF Type ORF2
Protein Length 37
Nucleotide Length 114
Protein Sequence MPHGFLEFVPLFVHLIFWSINLSYSCIYLRVVKKTFR
Nucleotide Sequence CTGCCTCATGGCTTTTTGGAATTCGTCCCACTCTTTGTCCATCTGATCTTTTGGAGCATCAACCTTTCGTACTCTTGCATCTACCTCAGGGTCGTCAAAAAAACCTTCCGGTAA
CircID chr17:34962280|34962465
ORF Type ORF3
Protein Length 30
Nucleotide Length 90
Protein Sequence MDKEWDEFQKAMRQVNTISEAIVAEEDEEG
Nucleotide Sequence ATGGACAAAGAGTGGGACGAATTCCAAAAAGCCATGAGGCAGGTCAACACTATTTCCGAAGCCATAGTTGCCGAAGAGGATGAGGAGGGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab