CircRNA Information

General Information
circRNA Basic Information
CircID chr17:35844117|35844368
Strand +
CircType exon
Host Gene ENSG00000270647.4;
Algorism CIRI2;
Sequence CTCCTCCTGAGGGACGAGAGTCCTCTGGTCTAGGCTCATTGCACTGATTGCAGGAATTCCTTCGAGCAAAGTTCATATTTCCGCATGACCTAAGAAAGGAGGAAAATATAATGCTCCTATATAGTTTCTAATGGACTCAGAACCCCTTTCTGTATCCTCCACAGCCCCAATCCCAACCCCTACTCTCACCAAAGTAAACAAGACACTTACGGATTAGGGCAAACCCAATCCCCACTTTTGGGGTCTCCACCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:35844117|35844368 hsa-miR-148a-5p 0 0 1
chr17:35844117|35844368 hsa-miR-148a-3p 0 0 1
chr17:35844117|35844368 hsa-miR-130a-5p 0 0 1
chr17:35844117|35844368 hsa-miR-130a-3p 0 0 1
chr17:35844117|35844368 hsa-miR-152-5p 0 0 1
chr17:35844117|35844368 hsa-miR-152-3p 0 0 1
chr17:35844117|35844368 hsa-miR-301a-5p 0 0 1
chr17:35844117|35844368 hsa-miR-301a-3p 0 0 1
chr17:35844117|35844368 hsa-miR-130b-5p 0 0 1
chr17:35844117|35844368 hsa-miR-130b-3p 0 0 1
chr17:35844117|35844368 hsa-miR-148b-5p 0 0 1
chr17:35844117|35844368 hsa-miR-148b-3p 0 0 1
chr17:35844117|35844368 hsa-miR-431-5p 0 0 1
chr17:35844117|35844368 hsa-miR-431-3p 0 0 1
chr17:35844117|35844368 hsa-miR-595 0 0 1
chr17:35844117|35844368 hsa-miR-629-5p 0 0 1
chr17:35844117|35844368 hsa-miR-629-3p 0 0 1
chr17:35844117|35844368 hsa-miR-454-5p 0 0 1
chr17:35844117|35844368 hsa-miR-454-3p 0 0 1
chr17:35844117|35844368 hsa-miR-765 1 0 1
chr17:35844117|35844368 hsa-miR-874-5p 0 0 1
chr17:35844117|35844368 hsa-miR-874-3p 0 0 1
chr17:35844117|35844368 hsa-miR-708-5p 0 0 1
chr17:35844117|35844368 hsa-miR-708-3p 0 0 1
chr17:35844117|35844368 hsa-miR-301b-5p 0 0 1
chr17:35844117|35844368 hsa-miR-301b-3p 0 0 1
chr17:35844117|35844368 hsa-miR-1238-5p 0 0 1
chr17:35844117|35844368 hsa-miR-1238-3p 0 0 1
chr17:35844117|35844368 hsa-miR-1252-5p 0 0 1
chr17:35844117|35844368 hsa-miR-1252-3p 0 0 1
chr17:35844117|35844368 hsa-miR-491-5p 0 0 1
chr17:35844117|35844368 hsa-miR-28-5p 0 0 1
chr17:35844117|35844368 hsa-miR-885-5p 0 0 1
chr17:35844117|35844368 hsa-miR-769-3p 1 0 1
chr17:35844117|35844368 hsa-miR-450b-3p 0 0 1
chr17:35844117|35844368 hsa-miR-9 0 0 1
chr17:35844117|35844368 hsa-miR-1185 0 0 1
chr17:35844117|35844368 hsa-miR-762 1 0 0
chr17:35844117|35844368 hsa-miR-3154 1 0 0
chr17:35844117|35844368 hsa-miR-3170 0 1 0
chr17:35844117|35844368 hsa-miR-4295 0 1 0
chr17:35844117|35844368 hsa-miR-4260 0 1 0
chr17:35844117|35844368 hsa-miR-4507 1 0 0
chr17:35844117|35844368 hsa-miR-4651 1 0 0
chr17:35844117|35844368 hsa-miR-4675 0 1 0
chr17:35844117|35844368 hsa-miR-4683 1 0 0
chr17:35844117|35844368 hsa-miR-4710 1 0 0
chr17:35844117|35844368 hsa-miR-4741 1 1 0
chr17:35844117|35844368 hsa-miR-5094 0 1 0
chr17:35844117|35844368 hsa-miR-5194 1 1 0
chr17:35844117|35844368 hsa-miR-5572 1 0 0
chr17:35844117|35844368 hsa-miR-6085 1 0 0
chr17:35844117|35844368 hsa-miR-6086 1 0 0
chr17:35844117|35844368 hsa-miR-6127 1 0 0
chr17:35844117|35844368 hsa-miR-8089 1 0 0
chr17:35844117|35844368 hsa-miR-92a-1-5p 1 1 0
chr17:35844117|35844368 hsa-miR-92a-2-5p 0 1 0
chr17:35844117|35844368 hsa-miR-671-5p 1 0 0
chr17:35844117|35844368 hsa-miR-7106-5p 1 0 0
chr17:35844117|35844368 hsa-miR-6894-5p 1 1 0
chr17:35844117|35844368 hsa-miR-6857-5p 1 1 0
chr17:35844117|35844368 hsa-miR-6728-5p 1 0 0
chr17:35844117|35844368 hsa-miR-7847-3p 1 1 0
chr17:35844117|35844368 hsa-miR-197-5p 1 0 0
chr17:35844117|35844368 hsa-miR-6871-5p 1 0 0
chr17:35844117|35844368 hsa-miR-6793-5p 1 0 0
chr17:35844117|35844368 hsa-miR-6732-5p 1 0 0
chr17:35844117|35844368 hsa-miR-6782-5p 1 0 0
chr17:35844117|35844368 hsa-miR-615-5p 1 0 0
chr17:35844117|35844368 hsa-miR-4738-3p 1 0 0
chr17:35844117|35844368 hsa-miR-1229-5p 1 0 0
chr17:35844117|35844368 hsa-miR-193b-5p 1 0 0
chr17:35844117|35844368 hsa-miR-296-3p 1 0 0
chr17:35844117|35844368 hsa-miR-6824-5p 1 0 0
chr17:35844117|35844368 hsa-miR-3074-5p 0 1 0
chr17:35844117|35844368 hsa-miR-1296-3p 0 1 0
chr17:35844117|35844368 hsa-miR-3157-3p 0 1 0
chr17:35844117|35844368 hsa-miR-6839-3p 0 1 0
chr17:35844117|35844368 hsa-miR-4763-3p 1 0 0
chr17:35844117|35844368 hsa-miR-6870-5p 1 0 0
chr17:35844117|35844368 hsa-miR-6737-5p 1 0 0
chr17:35844117|35844368 hsa-miR-6752-5p 1 0 0
chr17:35844117|35844368 hsa-miR-6756-5p 1 0 0
chr17:35844117|35844368 hsa-miR-6803-5p 1 0 0
chr17:35844117|35844368 hsa-miR-6813-5p 1 0 0
chr17:35844117|35844368 hsa-miR-6819-5p 1 0 0
chr17:35844117|35844368 hsa-miR-7110-5p 1 0 0
chr17:35844117|35844368 hsa-miR-6722-3p 1 0 0
chr17:35844117|35844368 hsa-miR-6751-5p 1 1 0
chr17:35844117|35844368 hsa-miR-6797-5p 1 0 0
chr17:35844117|35844368 hsa-miR-5196-5p 1 0 0
chr17:35844117|35844368 hsa-miR-10526-3p 0 1 0
chr17:35844117|35844368 hsa-miR-4745-5p 1 0 0
chr17:35844117|35844368 hsa-miR-6846-5p 1 0 0
chr17:35844117|35844368 hsa-miR-6848-5p 1 0 0
chr17:35844117|35844368 hsa-miR-4758-5p 1 0 0
chr17:35844117|35844368 hsa-miR-3198 1 0 0
chr17:35844117|35844368 hsa-miR-3940-5p 1 0 0
chr17:35844117|35844368 hsa-miR-6736-5p 1 0 0
chr17:35844117|35844368 hsa-miR-6855-5p 1 1 0
chr17:35844117|35844368 hsa-miR-3679-5p 1 1 0
chr17:35844117|35844368 hsa-miR-6790-5p 1 0 0
chr17:35844117|35844368 hsa-miR-548az-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr17:35844117|35844368
ORF Type ORF1
Protein Length 28
Nucleotide Length 87
Protein Sequence MDSEPLSVSSTAPIPTPTLTKVNKTLTD
Nucleotide Sequence ATGGACTCAGAACCCCTTTCTGTATCCTCCACAGCCCCAATCCCAACCCCTACTCTCACCAAAGTAAACAAGACACTTACGGATTAG
CircID chr17:35844117|35844368
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence MQEFLRAKFIFPHDLRKEENIMLLYSF
Nucleotide Sequence TTGCAGGAATTCCTTCGAGCAAAGTTCATATTTCCGCATGACCTAAGAAAGGAGGAAAATATAATGCTCCTATATAGTTTCTAA
CircID chr17:35844117|35844368
ORF Type ORF3
Protein Length 42
Nucleotide Length 129
Protein Sequence MFTLVRVGVGIGAVEDTERGSESIRNYIGALYFPPFLGHAEI
Nucleotide Sequence TTGTTTACTTTGGTGAGAGTAGGGGTTGGGATTGGGGCTGTGGAGGATACAGAAAGGGGTTCTGAGTCCATTAGAAACTATATAGGAGCATTATATTTTCCTCCTTTCTTAGGTCATGCGGAAATATGA
CircID chr17:35844117|35844368
ORF Type ORF4
Protein Length 25
Nucleotide Length 75
Protein Sequence MNFARRNSCNQCNEPRPEDSRPSGG
Nucleotide Sequence ATGAACTTTGCTCGAAGGAATTCCTGCAATCAGTGCAATGAGCCTAGACCAGAGGACTCTCGTCCCTCAGGAGGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab