CircRNA Information

General Information
circRNA Basic Information
CircID chr17:3604690|3604835
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence GGGGTCAAGGCCCAGAGGCAGGCAGTGTGTGGCGGGAGGAAAAGCAGCGGCTGGTGGGCTGGAGTCCCCTACCCTGCCCTGAACTGGGTCTGGCCCACCATCTCTCCAGGCTGTTTTACAGCCTCCTGTCTCCCAGAACACCCTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:3604690|3604835 hsa-miR-185-5p 0 0 1
chr17:3604690|3604835 hsa-miR-185-3p 0 0 1
chr17:3604690|3604835 hsa-miR-326 0 1 1
chr17:3604690|3604835 hsa-miR-603 0 1 1
chr17:3604690|3604835 hsa-miR-609 0 0 1
chr17:3604690|3604835 hsa-miR-612 0 0 1
chr17:3604690|3604835 hsa-miR-766-5p 0 0 1
chr17:3604690|3604835 hsa-miR-766-3p 0 0 1
chr17:3604690|3604835 hsa-miR-541-5p 0 0 1
chr17:3604690|3604835 hsa-miR-541-3p 0 0 1
chr17:3604690|3604835 hsa-miR-1226-5p 0 0 1
chr17:3604690|3604835 hsa-miR-1226-3p 0 0 1
chr17:3604690|3604835 hsa-miR-1238-5p 0 0 1
chr17:3604690|3604835 hsa-miR-1238-3p 0 0 1
chr17:3604690|3604835 hsa-miR-485-5p 0 0 1
chr17:3604690|3604835 hsa-miR-654-5p 0 1 1
chr17:3604690|3604835 hsa-miR-508-5p 0 0 1
chr17:3604690|3604835 hsa-miR-1207-5p 0 1 1
chr17:3604690|3604835 hsa-miR-330-5p 0 1 1
chr17:3604690|3604835 hsa-miR-1285 0 0 1
chr17:3604690|3604835 hsa-miR-1254 0 0 1
chr17:3604690|3604835 hsa-miR-4298 1 0 0
chr17:3604690|3604835 hsa-miR-4314 0 1 0
chr17:3604690|3604835 hsa-miR-4739 1 0 0
chr17:3604690|3604835 hsa-miR-5685 0 1 0
chr17:3604690|3604835 hsa-miR-8085 1 0 0
chr17:3604690|3604835 hsa-miR-6747-3p 0 1 0
chr17:3604690|3604835 hsa-miR-6861-5p 1 0 0
chr17:3604690|3604835 hsa-miR-6894-5p 1 0 0
chr17:3604690|3604835 hsa-miR-6720-5p 1 1 0
chr17:3604690|3604835 hsa-miR-210-5p 1 0 0
chr17:3604690|3604835 hsa-miR-6089 1 0 0
chr17:3604690|3604835 hsa-miR-3192-5p 0 1 0
chr17:3604690|3604835 hsa-miR-6757-5p 0 1 0
chr17:3604690|3604835 hsa-miR-4695-5p 1 1 0
chr17:3604690|3604835 hsa-miR-6798-5p 1 0 0
chr17:3604690|3604835 hsa-miR-6782-5p 1 0 0
chr17:3604690|3604835 hsa-miR-6882-3p 0 1 0
chr17:3604690|3604835 hsa-miR-4707-3p 1 0 0
chr17:3604690|3604835 hsa-miR-6894-3p 0 1 0
chr17:3604690|3604835 hsa-miR-30c-2-3p 0 1 0
chr17:3604690|3604835 hsa-miR-3127-5p 0 1 0
chr17:3604690|3604835 hsa-miR-6771-5p 1 0 0
chr17:3604690|3604835 hsa-miR-149-3p 1 0 0
chr17:3604690|3604835 hsa-miR-6824-5p 0 1 0
chr17:3604690|3604835 hsa-miR-6743-3p 1 0 0
chr17:3604690|3604835 hsa-let-7e-5p 0 1 0
chr17:3604690|3604835 hsa-miR-4687-5p 1 0 0
chr17:3604690|3604835 hsa-miR-584-3p 1 0 0
chr17:3604690|3604835 hsa-miR-4758-3p 1 0 0
chr17:3604690|3604835 hsa-miR-671-3p 1 0 0
chr17:3604690|3604835 hsa-miR-4524a-3p 0 1 0
chr17:3604690|3604835 hsa-miR-3670 1 0 0
chr17:3604690|3604835 hsa-miR-1229-3p 1 0 0
chr17:3604690|3604835 hsa-miR-132-3p 0 1 0
chr17:3604690|3604835 hsa-miR-6778-5p 0 1 0
chr17:3604690|3604835 hsa-miR-6775-5p 0 1 0
chr17:3604690|3604835 hsa-miR-6743-5p 1 0 0
chr17:3604690|3604835 hsa-miR-7107-5p 0 1 0
chr17:3604690|3604835 hsa-miR-1249-5p 1 0 0
chr17:3604690|3604835 hsa-miR-6780a-5p 1 0 0
chr17:3604690|3604835 hsa-miR-6788-5p 0 1 0
chr17:3604690|3604835 hsa-miR-6797-5p 0 1 0
chr17:3604690|3604835 hsa-miR-6879-5p 0 1 0
chr17:3604690|3604835 hsa-miR-4632-5p 0 1 0
chr17:3604690|3604835 hsa-miR-6735-5p 0 1 0
chr17:3604690|3604835 hsa-miR-6795-5p 1 0 0
chr17:3604690|3604835 hsa-miR-6848-5p 1 0 0
chr17:3604690|3604835 hsa-miR-6887-5p 1 0 0
chr17:3604690|3604835 hsa-miR-4436b-3p 0 1 0
chr17:3604690|3604835 hsa-miR-3116 0 1 0
chr17:3604690|3604835 hsa-miR-6877-3p 0 1 0
chr17:3604690|3604835 hsa-miR-4722-3p 0 1 0
chr17:3604690|3604835 hsa-miR-6893-3p 1 0 0
chr17:3604690|3604835 hsa-miR-3130-5p 1 1 0
chr17:3604690|3604835 hsa-miR-6511b-3p 1 0 0
chr17:3604690|3604835 hsa-miR-4690-3p 1 0 0
chr17:3604690|3604835 hsa-miR-5195-3p 1 0 0
chr17:3604690|3604835 hsa-miR-4482-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:3604690|3604835
ORF Type ORF1
Protein Length 32
Nucleotide Length 96
Protein Sequence MVGWSPLPCPELGLAHHLSRLFYSLLSPRTPF
Nucleotide Sequence CTGGTGGGCTGGAGTCCCCTACCCTGCCCTGAACTGGGTCTGGCCCACCATCTCTCCAGGCTGTTTTACAGCCTCCTGTCTCCCAGAACACCCTTC
CircID chr17:3604690|3604835
ORF Type ORF2
Protein Length 34
Nucleotide Length 105
Protein Sequence MERWWARPSSGQGRGLQPTSRCFSSRHTLPASGP
Nucleotide Sequence CTGGAGAGATGGTGGGCCAGACCCAGTTCAGGGCAGGGTAGGGGACTCCAGCCCACCAGCCGCTGCTTTTCCTCCCGCCACACACTGCCTGCCTCTGGGCCTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab