CircRNA Information

General Information
circRNA Basic Information
CircID chr17:36949101|36949216
Strand +
CircType exon
Host Gene ENSG00000275700.3;
Algorism CIRI2;
Sequence CTTCCTCGGGGTCCGCTTCAGGGTCCGCCTCGCTTGGTCGCGGGTTCAACAACTGTTCCAGTTGCAGCGCCAGGGGCTGCGGCCCCGCCATCGTCACCAGCTCCCGGTCCACTCCG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:36949101|36949216 hsa-miR-504-5p 0 0 1
chr17:36949101|36949216 hsa-miR-504-3p 0 0 1
chr17:36949101|36949216 hsa-miR-653-5p 0 0 1
chr17:36949101|36949216 hsa-miR-653-3p 0 0 1
chr17:36949101|36949216 hsa-miR-891b 0 0 1
chr17:36949101|36949216 hsa-miR-744-5p 0 0 1
chr17:36949101|36949216 hsa-miR-744-3p 0 0 1
chr17:36949101|36949216 hsa-miR-920 0 1 1
chr17:36949101|36949216 hsa-miR-331-3p 0 0 1
chr17:36949101|36949216 hsa-miR-138 0 0 1
chr17:36949101|36949216 hsa-miR-663 0 0 1
chr17:36949101|36949216 hsa-miR-608 1 0 0
chr17:36949101|36949216 hsa-miR-663a 1 1 0
chr17:36949101|36949216 hsa-miR-762 1 0 0
chr17:36949101|36949216 hsa-miR-663b 1 0 0
chr17:36949101|36949216 hsa-miR-1269a 1 0 0
chr17:36949101|36949216 hsa-miR-1538 1 0 0
chr17:36949101|36949216 hsa-miR-2861 1 0 0
chr17:36949101|36949216 hsa-miR-4299 0 1 0
chr17:36949101|36949216 hsa-miR-4300 0 1 0
chr17:36949101|36949216 hsa-miR-4463 1 0 0
chr17:36949101|36949216 hsa-miR-4481 1 0 0
chr17:36949101|36949216 hsa-miR-4487 0 1 0
chr17:36949101|36949216 hsa-miR-4515 1 0 0
chr17:36949101|36949216 hsa-miR-4706 1 0 0
chr17:36949101|36949216 hsa-miR-4754 1 0 0
chr17:36949101|36949216 hsa-miR-6090 1 0 0
chr17:36949101|36949216 hsa-miR-12115 1 0 0
chr17:36949101|36949216 hsa-miR-128-1-5p 0 1 0
chr17:36949101|36949216 hsa-miR-323a-5p 1 0 0
chr17:36949101|36949216 hsa-miR-6765-5p 1 1 0
chr17:36949101|36949216 hsa-miR-8071 1 1 0
chr17:36949101|36949216 hsa-miR-6741-5p 1 0 0
chr17:36949101|36949216 hsa-miR-4655-5p 1 0 0
chr17:36949101|36949216 hsa-miR-3180-3p 1 0 0
chr17:36949101|36949216 hsa-miR-4725-5p 0 1 0
chr17:36949101|36949216 hsa-miR-345-3p 0 1 0
chr17:36949101|36949216 hsa-miR-6786-5p 1 0 0
chr17:36949101|36949216 hsa-miR-4640-5p 1 0 0
chr17:36949101|36949216 hsa-miR-1908-5p 0 1 0
chr17:36949101|36949216 hsa-miR-1228-5p 1 0 0
chr17:36949101|36949216 hsa-miR-4690-5p 1 0 0
chr17:36949101|36949216 hsa-miR-92b-5p 1 0 0
chr17:36949101|36949216 hsa-miR-6717-5p 0 1 0
chr17:36949101|36949216 hsa-miR-6781-5p 1 0 0
chr17:36949101|36949216 hsa-miR-4800-5p 0 1 0
chr17:36949101|36949216 hsa-miR-4776-5p 1 0 0
chr17:36949101|36949216 hsa-miR-582-5p 0 1 0
chr17:36949101|36949216 hsa-miR-1207-5p 1 0 0
chr17:36949101|36949216 hsa-miR-6787-5p 0 1 0
chr17:36949101|36949216 hsa-miR-6816-5p 1 0 0
chr17:36949101|36949216 hsa-miR-5001-5p 1 0 0
chr17:36949101|36949216 hsa-miR-6726-5p 1 1 0
chr17:36949101|36949216 hsa-miR-6851-5p 1 0 0
chr17:36949101|36949216 hsa-miR-3620-5p 1 0 0
chr17:36949101|36949216 hsa-miR-10396a-5p 0 1 0
chr17:36949101|36949216 hsa-miR-10396b-5p 1 1 0
chr17:36949101|36949216 hsa-miR-1237-5p 1 0 0
chr17:36949101|36949216 hsa-miR-4745-5p 1 0 0
chr17:36949101|36949216 hsa-miR-6848-5p 1 0 0
chr17:36949101|36949216 hsa-miR-6887-5p 1 0 0
chr17:36949101|36949216 hsa-miR-939-5p 1 0 0
chr17:36949101|36949216 hsa-miR-6849-5p 1 0 0
chr17:36949101|36949216 hsa-miR-6724-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:36949101|36949216
ORF Type ORF1
Protein Length 27
Nucleotide Length 81
Protein Sequence MVAGSTTVPVAAPGAAAPPSSPAPGPL
Nucleotide Sequence TTGGTCGCGGGTTCAACAACTGTTCCAGTTGCAGCGCCAGGGGCTGCGGCCCCGCCATCGTCACCAGCTCCCGGTCCACTC
CircID chr17:36949101|36949216
ORF Type ORF2
Protein Length 33
Nucleotide Length 99
Protein Sequence MVTMAGPQPLALQLEQLLNPRPSEADPEADPEE
Nucleotide Sequence CTGGTGACGATGGCGGGGCCGCAGCCCCTGGCGCTGCAACTGGAACAGTTGTTGAACCCGCGACCAAGCGAGGCGGACCCTGAAGCGGACCCCGAGGAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab