CircRNA Information

General Information
circRNA Basic Information
CircID chr17:37086873|37087024
Strand +
CircType exon
Host Gene ENSG00000278540.3;
Algorism CIRI2;
Sequence CATGAGGTCTTACTAACCAAAGTAGGGCTGCCCCTCCTGTCCTGACAGCCCCTTGGCCTCCCAGCATGGGGAAGCGTGAGGAGTTGCCCAGCAGTGAGCAGCCCCCCTCACTCCTGGCCCCATGAGCCGCAGCCACAGGCAGCAGAGGAGGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:37086873|37087024 hsa-miR-604 0 1 1
chr17:37086873|37087024 hsa-miR-612 0 1 1
chr17:37086873|37087024 hsa-miR-647 0 0 1
chr17:37086873|37087024 hsa-miR-659-5p 0 0 1
chr17:37086873|37087024 hsa-miR-659-3p 0 0 1
chr17:37086873|37087024 hsa-miR-665 0 1 1
chr17:37086873|37087024 hsa-miR-1178-5p 0 0 1
chr17:37086873|37087024 hsa-miR-1178-3p 0 0 1
chr17:37086873|37087024 hsa-miR-486-3p 0 1 1
chr17:37086873|37087024 hsa-miR-423-5p 0 1 1
chr17:37086873|37087024 hsa-miR-767-3p 0 0 1
chr17:37086873|37087024 hsa-miR-1308 0 0 1
chr17:37086873|37087024 hsa-miR-9 0 0 1
chr17:37086873|37087024 hsa-miR-1285 0 0 1
chr17:37086873|37087024 hsa-miR-608 1 0 0
chr17:37086873|37087024 hsa-miR-623 1 0 0
chr17:37086873|37087024 hsa-miR-637 1 0 0
chr17:37086873|37087024 hsa-miR-650 1 0 0
chr17:37086873|37087024 hsa-miR-762 1 0 0
chr17:37086873|37087024 hsa-miR-3137 1 0 0
chr17:37086873|37087024 hsa-miR-3937 1 0 0
chr17:37086873|37087024 hsa-miR-4436a 0 1 0
chr17:37086873|37087024 hsa-miR-4498 1 0 0
chr17:37086873|37087024 hsa-miR-4656 1 0 0
chr17:37086873|37087024 hsa-miR-4688 0 1 0
chr17:37086873|37087024 hsa-miR-4706 1 0 0
chr17:37086873|37087024 hsa-miR-4741 1 1 0
chr17:37086873|37087024 hsa-miR-6071 0 1 0
chr17:37086873|37087024 hsa-miR-6085 1 1 0
chr17:37086873|37087024 hsa-miR-4433b-3p 0 1 0
chr17:37086873|37087024 hsa-miR-4433a-3p 0 1 0
chr17:37086873|37087024 hsa-miR-7106-5p 1 0 0
chr17:37086873|37087024 hsa-miR-4687-3p 1 0 0
chr17:37086873|37087024 hsa-miR-6799-5p 1 0 0
chr17:37086873|37087024 hsa-miR-1227-5p 0 1 0
chr17:37086873|37087024 hsa-miR-6089 1 0 0
chr17:37086873|37087024 hsa-miR-3192-5p 0 1 0
chr17:37086873|37087024 hsa-miR-6762-3p 0 1 0
chr17:37086873|37087024 hsa-miR-4474-3p 0 1 0
chr17:37086873|37087024 hsa-miR-185-3p 1 1 0
chr17:37086873|37087024 hsa-miR-6782-5p 1 0 0
chr17:37086873|37087024 hsa-miR-5008-5p 1 0 0
chr17:37086873|37087024 hsa-miR-5006-5p 1 0 0
chr17:37086873|37087024 hsa-miR-7109-5p 1 0 0
chr17:37086873|37087024 hsa-miR-4640-5p 1 1 0
chr17:37086873|37087024 hsa-miR-6771-5p 1 0 0
chr17:37086873|37087024 hsa-miR-6780a-3p 0 1 0
chr17:37086873|37087024 hsa-miR-4667-3p 0 1 0
chr17:37086873|37087024 hsa-miR-149-3p 1 0 0
chr17:37086873|37087024 hsa-miR-3120-5p 0 1 0
chr17:37086873|37087024 hsa-miR-6811-3p 0 1 0
chr17:37086873|37087024 hsa-miR-1233-5p 1 1 0
chr17:37086873|37087024 hsa-miR-1273h-5p 1 1 0
chr17:37086873|37087024 hsa-miR-4763-3p 1 0 0
chr17:37086873|37087024 hsa-miR-6778-5p 1 1 0
chr17:37086873|37087024 hsa-miR-6743-5p 1 0 0
chr17:37086873|37087024 hsa-miR-6752-5p 1 0 0
chr17:37086873|37087024 hsa-miR-6754-5p 1 0 0
chr17:37086873|37087024 hsa-miR-6813-5p 1 1 0
chr17:37086873|37087024 hsa-miR-7110-5p 1 0 0
chr17:37086873|37087024 hsa-miR-6779-5p 0 1 0
chr17:37086873|37087024 hsa-miR-6780a-5p 0 1 0
chr17:37086873|37087024 hsa-miR-4728-5p 1 0 0
chr17:37086873|37087024 hsa-miR-328-5p 1 1 0
chr17:37086873|37087024 hsa-miR-4649-5p 1 0 0
chr17:37086873|37087024 hsa-miR-6846-5p 1 1 0
chr17:37086873|37087024 hsa-miR-6848-5p 1 0 0
chr17:37086873|37087024 hsa-miR-6845-5p 0 1 0
chr17:37086873|37087024 hsa-miR-6885-5p 1 0 0
chr17:37086873|37087024 hsa-miR-1285-3p 0 1 0
chr17:37086873|37087024 hsa-miR-6762-5p 1 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:37086873|37087024
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence MTAPWPPSMGKREELPSSEQPPSLLAP
Nucleotide Sequence CTGACAGCCCCTTGGCCTCCCAGCATGGGGAAGCGTGAGGAGTTGCCCAGCAGTGAGCAGCCCCCCTCACTCCTGGCCCCATGA
CircID chr17:37086873|37087024
ORF Type ORF2
Protein Length 33
Nucleotide Length 99
Protein Sequence MLTAGQLLTLPHAGRPRGCQDRRGSPTLVSKTS
Nucleotide Sequence CTGCTCACTGCTGGGCAACTCCTCACGCTTCCCCATGCTGGGAGGCCAAGGGGCTGTCAGGACAGGAGGGGCAGCCCTACTTTGGTTAGTAAGACCTCA
CircID chr17:37086873|37087024
ORF Type ORF3
Protein Length 48
Nucleotide Length 144
Protein Sequence MLPVAAAHGARSEGGCSLLGNSSRFPMLGGQGAVRTGGAALLWLVRPH
Nucleotide Sequence CTGCTGCCTGTGGCTGCGGCTCATGGGGCCAGGAGTGAGGGGGGCTGCTCACTGCTGGGCAACTCCTCACGCTTCCCCATGCTGGGAGGCCAAGGGGCTGTCAGGACAGGAGGGGCAGCCCTACTTTGGTTAGTAAGACCTCAT
CircID chr17:37086873|37087024
ORF Type ORF4
Protein Length 41
Nucleotide Length 126
Protein Sequence MWLRLMGPGVRGAAHCWATPHASPCWEAKGLSGQEGQPYFG
Nucleotide Sequence CTGTGGCTGCGGCTCATGGGGCCAGGAGTGAGGGGGGCTGCTCACTGCTGGGCAACTCCTCACGCTTCCCCATGCTGGGAGGCCAAGGGGCTGTCAGGACAGGAGGGGCAGCCCTACTTTGGTTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab