CircRNA Information

General Information
circRNA Basic Information
CircID chr17:38726313|38726460
Strand +
CircType exon
Host Gene ENSG00000275023.3;
Algorism CIRI2;
Sequence TGCGCCTATCCCTGCCCTTGGCTGCCCTGGGTCCAGGAGGAGAGAGACAGGCAGACAGACACACACACACACACACACACACACACACATGCACGCACACACACACTCACACACTGAGACGGGCAGCTCCATCTCCCCACCCTCGGCA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:38726313|38726460 hsa-miR-22-5p 0 0 1
chr17:38726313|38726460 hsa-miR-22-3p 0 0 1
chr17:38726313|38726460 hsa-miR-210-5p 0 0 1
chr17:38726313|38726460 hsa-miR-210-3p 0 0 1
chr17:38726313|38726460 hsa-miR-346 0 1 1
chr17:38726313|38726460 hsa-miR-517-5p 0 0 1
chr17:38726313|38726460 hsa-miR-517b-3p 0 0 1
chr17:38726313|38726460 hsa-miR-558 0 0 1
chr17:38726313|38726460 hsa-miR-593-5p 0 0 1
chr17:38726313|38726460 hsa-miR-593-3p 0 0 1
chr17:38726313|38726460 hsa-miR-632 0 0 1
chr17:38726313|38726460 hsa-miR-939-5p 0 0 1
chr17:38726313|38726460 hsa-miR-939-3p 0 0 1
chr17:38726313|38726460 hsa-miR-491-5p 0 0 1
chr17:38726313|38726460 hsa-miR-574-5p 1 1 1
chr17:38726313|38726460 hsa-miR-1207-5p 0 0 1
chr17:38726313|38726460 hsa-miR-422a 1 1 0
chr17:38726313|38726460 hsa-miR-608 1 0 0
chr17:38726313|38726460 hsa-miR-658 1 0 0
chr17:38726313|38726460 hsa-miR-297 1 1 0
chr17:38726313|38726460 hsa-miR-711 0 1 0
chr17:38726313|38726460 hsa-miR-3141 1 0 0
chr17:38726313|38726460 hsa-miR-4279 0 1 0
chr17:38726313|38726460 hsa-miR-4455 1 0 0
chr17:38726313|38726460 hsa-miR-4651 1 0 0
chr17:38726313|38726460 hsa-miR-4658 1 0 0
chr17:38726313|38726460 hsa-miR-4706 1 0 0
chr17:38726313|38726460 hsa-miR-5090 0 1 0
chr17:38726313|38726460 hsa-miR-8082 0 1 0
chr17:38726313|38726460 hsa-miR-214-5p 0 1 0
chr17:38726313|38726460 hsa-miR-92a-2-5p 0 1 0
chr17:38726313|38726460 hsa-miR-3150a-3p 0 1 0
chr17:38726313|38726460 hsa-miR-6867-5p 1 0 0
chr17:38726313|38726460 hsa-miR-6746-5p 0 1 0
chr17:38726313|38726460 hsa-miR-6759-5p 1 0 0
chr17:38726313|38726460 hsa-miR-6873-3p 1 1 0
chr17:38726313|38726460 hsa-miR-7110-3p 0 1 0
chr17:38726313|38726460 hsa-miR-6845-3p 0 1 0
chr17:38726313|38726460 hsa-miR-6732-5p 1 0 0
chr17:38726313|38726460 hsa-miR-486-3p 0 1 0
chr17:38726313|38726460 hsa-miR-6782-5p 1 0 0
chr17:38726313|38726460 hsa-miR-6874-5p 0 1 0
chr17:38726313|38726460 hsa-miR-6786-5p 1 0 0
chr17:38726313|38726460 hsa-miR-7109-5p 1 0 0
chr17:38726313|38726460 hsa-miR-1226-5p 1 0 0
chr17:38726313|38726460 hsa-miR-6894-3p 1 0 0
chr17:38726313|38726460 hsa-miR-6753-5p 1 1 0
chr17:38726313|38726460 hsa-miR-6514-3p 0 1 0
chr17:38726313|38726460 hsa-miR-5001-3p 0 1 0
chr17:38726313|38726460 hsa-miR-296-3p 1 0 0
chr17:38726313|38726460 hsa-miR-6818-3p 0 1 0
chr17:38726313|38726460 hsa-miR-6830-3p 1 0 0
chr17:38726313|38726460 hsa-miR-4787-5p 1 0 0
chr17:38726313|38726460 hsa-miR-3690 1 1 0
chr17:38726313|38726460 hsa-miR-4776-5p 1 0 0
chr17:38726313|38726460 hsa-miR-3120-5p 0 1 0
chr17:38726313|38726460 hsa-miR-660-3p 0 1 0
chr17:38726313|38726460 hsa-miR-6895-3p 0 1 0
chr17:38726313|38726460 hsa-miR-1468-5p 1 0 0
chr17:38726313|38726460 hsa-miR-6738-3p 0 1 0
chr17:38726313|38726460 hsa-miR-6888-3p 0 1 0
chr17:38726313|38726460 hsa-miR-4763-3p 1 1 0
chr17:38726313|38726460 hsa-miR-6769b-5p 1 0 0
chr17:38726313|38726460 hsa-miR-6787-5p 1 0 0
chr17:38726313|38726460 hsa-miR-6816-5p 1 0 0
chr17:38726313|38726460 hsa-miR-6870-5p 1 0 0
chr17:38726313|38726460 hsa-miR-6775-5p 1 0 0
chr17:38726313|38726460 hsa-miR-6726-5p 1 0 0
chr17:38726313|38726460 hsa-miR-6743-5p 0 1 0
chr17:38726313|38726460 hsa-miR-6752-5p 1 0 0
chr17:38726313|38726460 hsa-miR-6756-5p 1 1 0
chr17:38726313|38726460 hsa-miR-6769a-5p 1 0 0
chr17:38726313|38726460 hsa-miR-6819-5p 1 0 0
chr17:38726313|38726460 hsa-miR-7110-5p 1 1 0
chr17:38726313|38726460 hsa-miR-6879-5p 0 1 0
chr17:38726313|38726460 hsa-miR-1915-3p 0 1 0
chr17:38726313|38726460 hsa-miR-4728-5p 1 0 0
chr17:38726313|38726460 hsa-miR-1237-5p 1 0 0
chr17:38726313|38726460 hsa-miR-4632-5p 0 1 0
chr17:38726313|38726460 hsa-miR-4685-5p 1 1 0
chr17:38726313|38726460 hsa-miR-6735-5p 0 1 0
chr17:38726313|38726460 hsa-miR-675-5p 1 0 0
chr17:38726313|38726460 hsa-miR-4436b-3p 0 1 0
chr17:38726313|38726460 hsa-miR-6773-5p 0 1 0
chr17:38726313|38726460 hsa-miR-6790-5p 0 1 0
chr17:38726313|38726460 hsa-miR-6724-5p 1 1 0
chr17:38726313|38726460 hsa-miR-6753-3p 1 0 0
chr17:38726313|38726460 hsa-miR-7107-3p 0 1 0
chr17:38726313|38726460 hsa-miR-6837-5p 0 1 0
chr17:38726313|38726460 hsa-miR-6500-5p 1 0 0
chr17:38726313|38726460 hsa-miR-6876-3p 1 1 0
chr17:38726313|38726460 hsa-miR-5699-3p 0 1 0
chr17:38726313|38726460 hsa-miR-340-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:38726313|38726460
ORF Type ORF1
Protein Length 31
Nucleotide Length 96
Protein Sequence MPWVQEERDRQTDTHTHTHTHTHARTHTLTH
Nucleotide Sequence CTGCCCTGGGTCCAGGAGGAGAGAGACAGGCAGACAGACACACACACACACACACACACACACACACATGCACGCACACACACACTCACACACTGA
CircID chr17:38726313|38726460
ORF Type ORF2
Protein Length 45
Nucleotide Length 135
Protein Sequence MPLAALGPGGERQADRHTHTHTHTHTCTHTHTHTLRRAAPSPHPR
Nucleotide Sequence CTGCCCTTGGCTGCCCTGGGTCCAGGAGGAGAGAGACAGGCAGACAGACACACACACACACACACACACACACACACATGCACGCACACACACACTCACACACTGAGACGGGCAGCTCCATCTCCCCACCCTCGG
CircID chr17:38726313|38726460
ORF Type ORF3
Protein Length 44
Nucleotide Length 132
Protein Sequence MELPVSVCECVCACMCVCVCVCVCVCLPVSLLLDPGQPRAGIGA
Nucleotide Sequence ATGGAGCTGCCCGTCTCAGTGTGTGAGTGTGTGTGTGCGTGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTCTGCCTGTCTCTCTCCTCCTGGACCCAGGGCAGCCAAGGGCAGGGATAGGCGCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab