CircRNA Information

General Information
circRNA Basic Information
CircID chr17:38733368|38733564
Strand -
CircType exon
Host Gene ENSG00000277972.1;
Algorism CIRI2;
Sequence CTGCAAGGCCACTCAGAGGCCCCCGTACTGCGATGGCACCCACAGGAGTGAGCGCGTGCAGAAGGCAGAAGTGGGCTCCCCACTCTGAGGGGGCTGCTGCTGTCCAGCCACAGGTGGCCTTGGCTCCAGGCCTCTGACAGGCACCCCCTTCTGTGGGAAAGGAAACAGGTGCTGAGCCCAAGAGACTCTGGTACCCA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:38733368|38733564 hsa-miR-15a-5p 0 0 1
chr17:38733368|38733564 hsa-miR-15a-3p 0 0 1
chr17:38733368|38733564 hsa-miR-15b-5p 0 0 1
chr17:38733368|38733564 hsa-miR-15b-3p 0 0 1
chr17:38733368|38733564 hsa-miR-195-5p 0 0 1
chr17:38733368|38733564 hsa-miR-195-3p 0 0 1
chr17:38733368|38733564 hsa-miR-424-5p 0 0 1
chr17:38733368|38733564 hsa-miR-424-3p 0 0 1
chr17:38733368|38733564 hsa-miR-497-5p 0 0 1
chr17:38733368|38733564 hsa-miR-497-3p 0 0 1
chr17:38733368|38733564 hsa-miR-635 0 0 1
chr17:38733368|38733564 hsa-miR-939-5p 0 0 1
chr17:38733368|38733564 hsa-miR-939-3p 0 0 1
chr17:38733368|38733564 hsa-miR-1237-5p 0 0 1
chr17:38733368|38733564 hsa-miR-1237-3p 0 0 1
chr17:38733368|38733564 hsa-miR-491-5p 0 0 1
chr17:38733368|38733564 hsa-miR-1225-5p 0 0 1
chr17:38733368|38733564 hsa-miR-188-3p 0 0 1
chr17:38733368|38733564 hsa-miR-342-5p 0 0 1
chr17:38733368|38733564 hsa-miR-483-3p 0 0 1
chr17:38733368|38733564 hsa-miR-1260 0 0 1
chr17:38733368|38733564 hsa-miR-550 0 0 1
chr17:38733368|38733564 hsa-miR-16 0 0 1
chr17:38733368|38733564 hsa-miR-544 0 0 1
chr17:38733368|38733564 hsa-miR-1254 0 0 1
chr17:38733368|38733564 hsa-miR-24 0 0 1
chr17:38733368|38733564 hsa-miR-4322 1 0 0
chr17:38733368|38733564 hsa-miR-4265 1 0 0
chr17:38733368|38733564 hsa-miR-4656 1 0 0
chr17:38733368|38733564 hsa-miR-6089 1 0 0
chr17:38733368|38733564 hsa-miR-6735-3p 1 0 0
chr17:38733368|38733564 hsa-miR-1908-3p 1 0 0
chr17:38733368|38733564 hsa-miR-6749-5p 1 0 0
chr17:38733368|38733564 hsa-miR-5001-5p 1 0 0
chr17:38733368|38733564 hsa-miR-6752-5p 1 0 0
chr17:38733368|38733564 hsa-miR-6774-5p 1 0 0
chr17:38733368|38733564 hsa-miR-3085-5p 1 0 0
chr17:38733368|38733564 hsa-miR-6762-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:38733368|38733564
ORF Type ORF1
Protein Length 37
Nucleotide Length 111
Protein Sequence MRGLLLSSHRWPWLQASDRHPLLWERKQVLSPRDSGT
Nucleotide Sequence CTGAGGGGGCTGCTGCTGTCCAGCCACAGGTGGCCTTGGCTCCAGGCCTCTGACAGGCACCCCCTTCTGTGGGAAAGGAAACAGGTGCTGAGCCCAAGAGACTCTGGTACC
CircID chr17:38733368|38733564
ORF Type ORF2
Protein Length 34
Nucleotide Length 105
Protein Sequence MAPTGVSACRRQKWAPHSEGAAAVQPQVALAPGL
Nucleotide Sequence ATGGCACCCACAGGAGTGAGCGCGTGCAGAAGGCAGAAGTGGGCTCCCCACTCTGAGGGGGCTGCTGCTGTCCAGCCACAGGTGGCCTTGGCTCCAGGCCTCTGA
CircID chr17:38733368|38733564
ORF Type ORF3
Protein Length 46
Nucleotide Length 138
Protein Sequence MSEAWSQGHLWLDSSSPLRVGSPLLPSARAHSCGCHRSTGASEWPC
Nucleotide Sequence CTGTCAGAGGCCTGGAGCCAAGGCCACCTGTGGCTGGACAGCAGCAGCCCCCTCAGAGTGGGGAGCCCACTTCTGCCTTCTGCACGCGCTCACTCCTGTGGGTGCCATCGCAGTACGGGGGCCTCTGAGTGGCCTTGC
CircID chr17:38733368|38733564
ORF Type ORF4
Protein Length 60
Nucleotide Length 180
Protein Sequence MGSAPVSFPTEGGACQRPGAKATCGWTAAAPSEWGAHFCLLHALTPVGAIAVRGPLSGLA
Nucleotide Sequence TTGGGCTCAGCACCTGTTTCCTTTCCCACAGAAGGGGGTGCCTGTCAGAGGCCTGGAGCCAAGGCCACCTGTGGCTGGACAGCAGCAGCCCCCTCAGAGTGGGGAGCCCACTTCTGCCTTCTGCACGCGCTCACTCCTGTGGGTGCCATCGCAGTACGGGGGCCTCTGAGTGGCCTTGCA
CircID chr17:38733368|38733564
ORF Type ORF5
Protein Length 51
Nucleotide Length 156
Protein Sequence MFPFPQKGVPVRGLEPRPPVAGQQQPPQSGEPTSAFCTRSLLWVPSQYGGL
Nucleotide Sequence CTGTTTCCTTTCCCACAGAAGGGGGTGCCTGTCAGAGGCCTGGAGCCAAGGCCACCTGTGGCTGGACAGCAGCAGCCCCCTCAGAGTGGGGAGCCCACTTCTGCCTTCTGCACGCGCTCACTCCTGTGGGTGCCATCGCAGTACGGGGGCCTCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab